#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.118521 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118522 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118523 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118524 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118525 R-9 0.90451191272 E-6 0.960538997805 NA NA None
other nr_hits NA
NvERTx.4.118526 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118531 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description gi|156363395|ref|XP_001626030.1|predicted protein [Nematostella vectensis], 1e-26
other nr_hits gi|999979346|gb|KXJ18520.1|Kelch-like protein 18 [Exaiptasia pallida] 6e-10; gi|1005434712|ref|XP_015754856.1|PREDICTED: kelch-like protein 20 [Acropora digitifera] 4e-05;
NvERTx.4.119908 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121815 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121816 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126007 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126008 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126010 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126011 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.152775 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.152779 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description gi|999983533|gb|KXJ22674.1|Deleted in malignant brain tumors 1 protein [Exaiptasia pallida], 1e-20
other nr_hits gi|1005437721|ref|XP_015756293.1|PREDICTED: uncharacterized protein LOC107335775 [Acropora digitifera] 2e-07; gi|1005478234|ref|XP_015775853.1|PREDICTED: scavenger receptor cysteine-rich domain superfamily protein-like [Acropora digitifera] 3e-07; gi|999990615|gb|KXJ29637.1|Low-density lipoprotein receptor-related protein 6 [Exaiptasia pallida] 1e-05;
NvERTx.4.154994 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.155095 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.157135 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.157136 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.163613 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.163615 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165011 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165013 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168634 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180648 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180649 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184660 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185752 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.186361 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.186362 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.186363 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.186364 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.186365 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.186368 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.186366 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193470 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197949 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202529 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202530 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202531 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202532 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202533 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202535 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202536 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202538 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202539 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202534 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202537 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202540 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
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