#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.45240 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.45241 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.45242 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.45243 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.45244 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.50696 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87652 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.117301 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description gi|156397907|ref|XP_001637931.1|predicted protein [Nematostella vectensis], 9e-06
other nr_hits NA
NvERTx.4.117303 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130410 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159547 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159548 R-9 0.905074299302 E-1 1.0 Q04400 Adenylate cyclase type 5 gi|156397907|ref|XP_001637931.1|predicted protein [Nematostella vectensis], 9e-122
other nr_hits gi|999971221|gb|KXJ10395.1|Adenylate cyclase type 6 [Exaiptasia pallida] 9e-56; gi|1005484408|ref|XP_015778856.1|PREDICTED: LOW QUALITY PROTEIN: adenylate cyclase type 5-like [Acropora digitifera] 7e-37; gi|1126227230|ref|XP_019648061.1|PREDICTED: adenylate cyclase type 5-like [Branchiostoma belcheri] 5e-28; gi|780015208|ref|XP_011664322.1|PREDICTED: adenylate cyclase type 5 isoform X1 [Strongylocentrotus purpuratus] 2e-21; gi|780015213|ref|XP_011664323.1|PREDICTED: adenylate cyclase type 5 isoform X2 [Strongylocentrotus purpuratus] 3e-21; gi|919047665|ref|XP_013407025.1|PREDICTED: adenylate cyclase type 5-like [Lingula anatina] 1e-19; gi|966643067|gb|KTF77979.1|hypothetical protein cypCar_00042452, partial [Cyprinus carpio] 2e-19; gi|196002757|ref|XP_002111246.1|hypothetical protein TRIADDRAFT_21914 [Trichoplax adhaerens] 3e-19; gi|926607899|ref|XP_013775017.1|PREDICTED: adenylate cyclase type 8-like [Limulus polyphemus] 4e-19;
NvERTx.4.159549 R-9 0.905074299302 E-1 1.0 Q04400 Adenylate cyclase type 5 gi|156397907|ref|XP_001637931.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|1005484408|ref|XP_015778856.1|PREDICTED: LOW QUALITY PROTEIN: adenylate cyclase type 5-like [Acropora digitifera] 0e+00; gi|919047665|ref|XP_013407025.1|PREDICTED: adenylate cyclase type 5-like [Lingula anatina] 1e-272; gi|260783532|ref|XP_002586828.1|hypothetical protein BRAFLDRAFT_105578 [Branchiostoma floridae] 8e-270; gi|828204811|ref|XP_012556398.1|PREDICTED: adenylate cyclase type 5-like [Hydra vulgaris] 2e-267; gi|762140153|ref|XP_011453239.1|PREDICTED: adenylate cyclase type 5 [Crassostrea gigas] 5e-267; gi|1049281734|ref|XP_017537224.1|PREDICTED: adenylate cyclase type 6 [Pygocentrus nattereri] 1e-264; gi|961805797|ref|XP_014910708.1|PREDICTED: adenylate cyclase type 6 [Poecilia latipinna] 3e-264; gi|1040679862|ref|XP_017209219.1|PREDICTED: adenylate cyclase type 6 [Danio rerio] 9e-264; gi|1069327792|ref|XP_018102845.1|PREDICTED: adenylate cyclase type 6-like isoform X1 [Xenopus laevis] 3e-263;
NvERTx.4.189748 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.207228 R-9 0.905074299302 E-1 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.220416 R-9 0.905074299302 E-1 1.0 P30803 Adenylate cyclase type 5 gi|156397907|ref|XP_001637931.1|predicted protein [Nematostella vectensis], 2e-11
other nr_hits gi|999971226|gb|KXJ10400.1|Adenylate cyclase type 5 [Exaiptasia pallida] 3e-09; gi|1126227230|ref|XP_019648061.1|PREDICTED: adenylate cyclase type 5-like [Branchiostoma belcheri] 4e-09; gi|260783532|ref|XP_002586828.1|hypothetical protein BRAFLDRAFT_105578 [Branchiostoma floridae] 4e-09; gi|86604721|ref|NP_031431.2|adenylate cyclase type 6 [Mus musculus] 9e-09; gi|507676001|ref|XP_004638668.1|PREDICTED: adenylate cyclase type 6 isoform X1 [Octodon degus] 9e-09; gi|507570010|ref|XP_004668617.1|PREDICTED: adenylate cyclase type 6 isoform X1 [Jaculus jaculus] 9e-09; gi|504181873|ref|XP_004599415.1|PREDICTED: adenylate cyclase type 6 isoform X1 [Ochotona princeps] 9e-09; gi|585677187|ref|XP_006819097.1|PREDICTED: LOW QUALITY PROTEIN: adenylate cyclase type 5-like [Saccoglossus kowalevskii] 1e-08; gi|828204811|ref|XP_012556398.1|PREDICTED: adenylate cyclase type 5-like [Hydra vulgaris] 1e-08;
NvERTx.4.38509 R-9 0.904955691502 E-6 0.999999999999 Q92847 Growth hormone secretagogue receptor type 1 gi|156393690|ref|XP_001636460.1|predicted protein [Nematostella vectensis], 2e-104
other nr_hits gi|156394328|ref|XP_001636778.1|predicted protein [Nematostella vectensis] 2e-66; gi|156397203|ref|XP_001637781.1|predicted protein [Nematostella vectensis] 4e-18; gi|156392132|ref|XP_001635903.1|predicted protein [Nematostella vectensis] 5e-18; gi|156371320|ref|XP_001628712.1|predicted protein [Nematostella vectensis] 5e-17; gi|156397973|ref|XP_001637964.1|predicted protein [Nematostella vectensis] 1e-13; gi|156386270|ref|XP_001633836.1|predicted protein [Nematostella vectensis] 5e-13; gi|156404470|ref|XP_001640430.1|predicted protein [Nematostella vectensis] 9e-13; gi|156370118|ref|XP_001628319.1|predicted protein [Nematostella vectensis] 1e-12; gi|156403756|ref|XP_001640074.1|predicted protein [Nematostella vectensis] 2e-12;
NvERTx.4.38510 R-9 0.904955691502 E-6 0.999999999999 Q92847 Growth hormone secretagogue receptor type 1 gi|156393690|ref|XP_001636460.1|predicted protein [Nematostella vectensis], 2e-104
other nr_hits gi|156394328|ref|XP_001636778.1|predicted protein [Nematostella vectensis] 2e-66; gi|156397203|ref|XP_001637781.1|predicted protein [Nematostella vectensis] 4e-18; gi|156392132|ref|XP_001635903.1|predicted protein [Nematostella vectensis] 5e-18; gi|156371320|ref|XP_001628712.1|predicted protein [Nematostella vectensis] 5e-17; gi|156397973|ref|XP_001637964.1|predicted protein [Nematostella vectensis] 1e-13; gi|156386270|ref|XP_001633836.1|predicted protein [Nematostella vectensis] 5e-13; gi|156404470|ref|XP_001640430.1|predicted protein [Nematostella vectensis] 9e-13; gi|156370118|ref|XP_001628319.1|predicted protein [Nematostella vectensis] 1e-12; gi|156403756|ref|XP_001640074.1|predicted protein [Nematostella vectensis] 2e-12;
NvERTx.4.38511 R-9 0.904955691502 E-6 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.226996 R-9 0.904955691502 E-6 0.999999999999 No_Uniprotmatch No_Description gi|156393690|ref|XP_001636460.1|predicted protein [Nematostella vectensis], 3e-49
other nr_hits gi|156394328|ref|XP_001636778.1|predicted protein [Nematostella vectensis] 2e-31; gi|1005455541|ref|XP_015764900.1|PREDICTED: trace amine-associated receptor 2-like [Acropora digitifera] 1e-05; gi|156370252|ref|XP_001628385.1|predicted protein [Nematostella vectensis] 5e-05; gi|156378217|ref|XP_001631040.1|predicted protein [Nematostella vectensis] 5e-05; gi|156378219|ref|XP_001631041.1|predicted protein [Nematostella vectensis] 5e-05;
NvERTx.4.231496 R-9 0.90451191272 E-6 0.960538997805 Q9Z2X8 Kelch-like ECH-associated protein 1 gi|156363395|ref|XP_001626030.1|predicted protein [Nematostella vectensis], 1e-30
other nr_hits gi|1005434712|ref|XP_015754856.1|PREDICTED: kelch-like protein 20 [Acropora digitifera] 4e-10; gi|831487732|ref|XP_012705937.1|PREDICTED: kelch-like ECH-associated protein 1 [Fundulus heteroclitus] 1e-05; gi|975130824|ref|XP_015281376.1|PREDICTED: kelch-like ECH-associated protein 1 [Gekko japonicus] 1e-05; gi|762118772|ref|XP_011442276.1|PREDICTED: kelch-like protein 3 isoform X1 [Crassostrea gigas] 2e-05; gi|762118774|ref|XP_011442277.1|PREDICTED: kelch-like protein 3 isoform X2 [Crassostrea gigas] 2e-05; gi|405952319|gb|EKC20144.1|ALK tyrosine kinase receptor [Crassostrea gigas] 2e-05; gi|602639622|ref|XP_007426630.1|PREDICTED: kelch-like ECH-associated protein 1 [Python bivittatus] 2e-05; gi|915249689|ref|XP_013296300.1|BTB/POZ domain protein [Necator americanus] 3e-05; gi|1133429791|ref|XP_019870847.1|PREDICTED: kelch-like protein 18 [Aethina tumida] 4e-05;
NvERTx.4.232980 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.1428 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.18894 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.25166 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.30679 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.30680 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.37898 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.41655 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.50393 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.56239 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description gi|999987613|gb|KXJ26726.1|Transmembrane protein 177 [Exaiptasia pallida], 8e-13
other nr_hits gi|999980979|gb|KXJ20153.1|hypothetical protein AC249_AIPGENE21349 [Exaiptasia pallida] 4e-12; gi|999973759|gb|KXJ12933.1|hypothetical protein AC249_AIPGENE24113 [Exaiptasia pallida] 9e-09; gi|156383332|ref|XP_001632788.1|predicted protein [Nematostella vectensis] 3e-08; gi|999973757|gb|KXJ12931.1|hypothetical protein AC249_AIPGENE24102 [Exaiptasia pallida] 2e-07;
NvERTx.4.80442 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80443 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80457 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80462 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80444 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82087 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.88244 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97442 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97446 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102795 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105866 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106864 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.107690 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111664 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111665 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118511 R-9 0.90451191272 E-6 0.960538997805 Q6DFF6 Kelch-like protein 20 gi|156363395|ref|XP_001626030.1|predicted protein [Nematostella vectensis], 2e-242
other nr_hits gi|1005434712|ref|XP_015754856.1|PREDICTED: kelch-like protein 20 [Acropora digitifera] 8e-123; gi|999979255|gb|KXJ18429.1|Kelch-like protein 20 [Exaiptasia pallida] 7e-71; gi|999989800|gb|KXJ28832.1|Kelch-like protein 20 [Exaiptasia pallida] 2e-67; gi|828203274|ref|XP_012555886.1|PREDICTED: kelch-like protein 2 [Hydra vulgaris] 5e-64; gi|156397024|ref|XP_001637692.1|predicted protein [Nematostella vectensis] 2e-63; gi|1005440710|ref|XP_015757695.1|PREDICTED: kelch-like protein diablo [Acropora digitifera] 7e-63; gi|312073913|ref|XP_003139733.1|ring canal kelch protein [Loa loa] 8e-59; gi|170587742|ref|XP_001898633.1|Kelch-like protein X [Brugia malayi] 3e-58; gi|925207159|gb|JAI55640.1|hypothetical protein, partial [Rhodnius neglectus] 7e-57;
NvERTx.4.118512 R-9 0.90451191272 E-6 0.960538997805 Q6DFF6 Kelch-like protein 20 gi|156363395|ref|XP_001626030.1|predicted protein [Nematostella vectensis], 2e-156
other nr_hits gi|1005434712|ref|XP_015754856.1|PREDICTED: kelch-like protein 20 [Acropora digitifera] 1e-72; gi|156350487|ref|XP_001622304.1|hypothetical protein NEMVEDRAFT_v1g220912 [Nematostella vectensis] 2e-49; gi|999979255|gb|KXJ18429.1|Kelch-like protein 20 [Exaiptasia pallida] 7e-45; gi|999979346|gb|KXJ18520.1|Kelch-like protein 18 [Exaiptasia pallida] 3e-43; gi|999989800|gb|KXJ28832.1|Kelch-like protein 20 [Exaiptasia pallida] 3e-42; gi|1005440710|ref|XP_015757695.1|PREDICTED: kelch-like protein diablo [Acropora digitifera] 1e-40; gi|156397024|ref|XP_001637692.1|predicted protein [Nematostella vectensis] 4e-39; gi|828203274|ref|XP_012555886.1|PREDICTED: kelch-like protein 2 [Hydra vulgaris] 4e-37; gi|641662909|ref|XP_008182435.1|PREDICTED: kelch-like protein 17 [Acyrthosiphon pisum] 2e-36;
NvERTx.4.118513 R-9 0.90451191272 E-6 0.960538997805 B0WWP2 Kelch-like protein diablo {ECO:0000250|UniProtKB:Q9VUU5} gi|156363395|ref|XP_001626030.1|predicted protein [Nematostella vectensis], 1e-242
other nr_hits gi|1005434712|ref|XP_015754856.1|PREDICTED: kelch-like protein 20 [Acropora digitifera] 1e-101; gi|999979255|gb|KXJ18429.1|Kelch-like protein 20 [Exaiptasia pallida] 1e-60; gi|999989800|gb|KXJ28832.1|Kelch-like protein 20 [Exaiptasia pallida] 1e-49; gi|1005440710|ref|XP_015757695.1|PREDICTED: kelch-like protein diablo [Acropora digitifera] 4e-46; gi|828203274|ref|XP_012555886.1|PREDICTED: kelch-like protein 2 [Hydra vulgaris] 3e-45; gi|156397024|ref|XP_001637692.1|predicted protein [Nematostella vectensis] 3e-44; gi|925207159|gb|JAI55640.1|hypothetical protein, partial [Rhodnius neglectus] 5e-43; gi|939263485|ref|XP_014251711.1|PREDICTED: kelch-like protein diablo [Cimex lectularius] 5e-43; gi|815818798|ref|XP_012230566.1|PREDICTED: LOW QUALITY PROTEIN: kelch-like protein diablo [Linepithema humile] 9e-43;
NvERTx.4.118520 R-9 0.90451191272 E-6 0.960538997805 No_Uniprotmatch No_Description None
other nr_hits NA
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