#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.130002 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130005 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.132302 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.132313 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.135477 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136645 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139034 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141948 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144044 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.150303 R-1 0.640809439554 E-3 0.999999988531 A0A1S3I0D4_LINUN uncharacterized protein LOC106159150 {ECO:0000313|RefSeq:XP_013390809.1} gi|999966176|gb|KXJ05352.1|Integrase/recombinase xerD-like, partial [Exaiptasia pallida], 7e-23
other nr_hits gi|1005493132|ref|XP_015749229.1|PREDICTED: integrase/recombinase xerD homolog [Acropora digitifera] 5e-21; gi|1005461540|ref|XP_015767851.1|PREDICTED: uncharacterized protein LOC107346559 [Acropora digitifera] 2e-14; gi|1139818131|ref|XP_019926479.1|PREDICTED: uncharacterized protein LOC109619834 isoform X1 [Crassostrea gigas] 2e-14; gi|999983016|gb|KXJ22161.1|Integrase/recombinase xerD-like [Exaiptasia pallida] 7e-14; gi|999969986|gb|KXJ09160.1|Integrase/recombinase xerD-like [Exaiptasia pallida] 2e-13; gi|999977213|gb|KXJ16387.1|Integrase/recombinase xerD-like [Exaiptasia pallida] 4e-13; gi|1139750226|ref|XP_019921863.1|PREDICTED: uncharacterized protein LOC109618488 [Crassostrea gigas] 6e-13; gi|1005442206|ref|XP_015758434.1|PREDICTED: uncharacterized protein LOC107337721 [Acropora digitifera] 2e-12; gi|919012679|ref|XP_013390809.1|PREDICTED: uncharacterized protein LOC106159150 [Lingula anatina] 3e-12;
NvERTx.4.150305 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.150306 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.150447 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154366 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154368 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154372 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.155327 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.155329 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156308 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159444 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159445 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159446 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159448 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161387 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.163105 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162797 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.167984 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168377 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171952 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173163 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173826 R-1 0.640809439554 E-3 0.999999988531 Q8IUL8 Cartilage intermediate layer protein 2 gi|999973074|gb|KXJ12248.1|Protein SpAN [Exaiptasia pallida], 7e-07
other nr_hits NA
NvERTx.4.173828 R-1 0.640809439554 E-3 0.999999988531 Q8IUL8 Cartilage intermediate layer protein 2 gi|999973074|gb|KXJ12248.1|Protein SpAN [Exaiptasia pallida], 4e-07
other nr_hits NA
NvERTx.4.173832 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174075 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177615 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177616 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177748 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177749 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179279 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179280 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179282 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179335 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179945 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179948 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185174 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185176 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185576 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185564 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188621 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188622 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
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