#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.17824 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.17825 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.21559 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.22763 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.26140 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.31969 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description gi|999977684|gb|KXJ16858.1|Collagen alpha-6(VI) chain [Exaiptasia pallida], 1e-23
other nr_hits gi|156368939|ref|XP_001627948.1|predicted protein [Nematostella vectensis] 2e-05; gi|156357636|ref|XP_001624321.1|predicted protein [Nematostella vectensis] 3e-05; gi|156370177|ref|XP_001628348.1|predicted protein [Nematostella vectensis] 3e-05; gi|156603351|ref|XP_001618816.1|hypothetical protein NEMVEDRAFT_v1g45144 [Nematostella vectensis] 3e-05; gi|156332805|ref|XP_001619290.1|hypothetical protein NEMVEDRAFT_v1g151777 [Nematostella vectensis] 3e-05; gi|156352248|ref|XP_001622674.1|hypothetical protein NEMVEDRAFT_v1g42712 [Nematostella vectensis] 3e-05;
NvERTx.4.31970 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.31971 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.2743 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.35791 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.35792 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.36829 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.38676 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.38677 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.40060 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.44732 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.49291 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.49292 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.53360 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.66349 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.66350 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71265 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.72633 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.72636 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.74981 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.3462 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.75129 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.79909 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80337 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82745 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.86674 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.86698 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90402 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.95621 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.95622 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.95625 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98887 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100327 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100811 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105303 R-1 0.640809439554 E-3 0.999999988531 A7S338 Lissencephaly-1 homolog {ECO:0000255|HAMAP-Rule:MF_03141} gi|156386518|ref|XP_001633959.1|predicted protein [Nematostella vectensis], 7e-245
other nr_hits gi|432890695|ref|XP_004075482.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Oryzias latipes] 2e-188; gi|657587647|ref|XP_008298124.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Stegastes partitus] 5e-188; gi|1101547497|ref|XP_018939637.1|PREDICTED: lissencephaly-1 homolog A isoform X3 [Cyprinus carpio] 6e-188; gi|657745417|ref|XP_008307930.1|PREDICTED: lissencephaly-1 homolog [Cynoglossus semilaevis] 6e-188; gi|1042298603|ref|XP_017345625.1|PREDICTED: lissencephaly-1-like protein A isoform X1 [Ictalurus punctatus] 1e-187; gi|1108914268|ref|XP_019115027.1|PREDICTED: lissencephaly-1 homolog [Larimichthys crocea] 1e-187; gi|974118475|ref|XP_015258802.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Cyprinodon variegatus] 1e-187; gi|1101547493|ref|XP_018939635.1|PREDICTED: lissencephaly-1 homolog A isoform X2 [Cyprinus carpio] 2e-187; gi|1079746469|ref|XP_018542763.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Lates calcarifer] 2e-187;
NvERTx.4.105304 R-1 0.640809439554 E-3 0.999999988531 A7S338 Lissencephaly-1 homolog {ECO:0000255|HAMAP-Rule:MF_03141} gi|156386518|ref|XP_001633959.1|predicted protein [Nematostella vectensis], 5e-91
other nr_hits gi|999982071|gb|KXJ21223.1|Pre-mRNA-processing-splicing factor 8 [Exaiptasia pallida] 9e-80; gi|260833738|ref|XP_002611869.1|hypothetical protein BRAFLDRAFT_59218 [Branchiostoma floridae] 1e-67; gi|1126158716|ref|XP_019616161.1|PREDICTED: lissencephaly-1 homolog [Branchiostoma belcheri] 1e-67; gi|919093643|ref|XP_013383657.1|PREDICTED: lissencephaly-1 homolog [Lingula anatina] 5e-67; gi|926627975|ref|XP_013779586.1|PREDICTED: lissencephaly-1 homolog [Limulus polyphemus] 8e-67; gi|762141909|ref|XP_011454155.1|PREDICTED: lissencephaly-1 homolog [Crassostrea gigas] 2e-66; gi|1073703251|gb|JAT94682.1|putative wd40 repeat-containing protein [Amblyomma aureolatum] 5e-66; gi|1073717276|gb|JAU01566.1|putative wd40 repeat-containing protein [Amblyomma sculptum] 5e-66; gi|443696696|gb|ELT97343.1|hypothetical protein CAPTEDRAFT_123658 [Capitella teleta] 7e-66;
NvERTx.4.105305 R-1 0.640809439554 E-3 0.999999988531 A7S338 Lissencephaly-1 homolog {ECO:0000255|HAMAP-Rule:MF_03141} gi|156386518|ref|XP_001633959.1|predicted protein [Nematostella vectensis], 3e-175
other nr_hits gi|926627975|ref|XP_013779586.1|PREDICTED: lissencephaly-1 homolog [Limulus polyphemus] 1e-134; gi|926614716|ref|XP_013772413.1|PREDICTED: lissencephaly-1 homolog [Limulus polyphemus] 2e-132; gi|1126158716|ref|XP_019616161.1|PREDICTED: lissencephaly-1 homolog [Branchiostoma belcheri] 3e-132; gi|919093643|ref|XP_013383657.1|PREDICTED: lissencephaly-1 homolog [Lingula anatina] 6e-132; gi|1158828310|ref|XP_020323562.1|lissencephaly-1 homolog A [Oncorhynchus kisutch] 2e-131; gi|1101547497|ref|XP_018939637.1|PREDICTED: lissencephaly-1 homolog A isoform X3 [Cyprinus carpio] 2e-131; gi|1042298603|ref|XP_017345625.1|PREDICTED: lissencephaly-1-like protein A isoform X1 [Ictalurus punctatus] 2e-131; gi|213514882|ref|NP_001133855.1|lissencephaly-1 homolog A [Salmo salar] 2e-131; gi|432890695|ref|XP_004075482.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Oryzias latipes] 4e-131;
NvERTx.4.105306 R-1 0.640809439554 E-3 0.999999988531 A7S338 Lissencephaly-1 homolog {ECO:0000255|HAMAP-Rule:MF_03141} gi|156386518|ref|XP_001633959.1|predicted protein [Nematostella vectensis], 7e-245
other nr_hits gi|432890695|ref|XP_004075482.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Oryzias latipes] 2e-188; gi|657587647|ref|XP_008298124.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Stegastes partitus] 5e-188; gi|1101547497|ref|XP_018939637.1|PREDICTED: lissencephaly-1 homolog A isoform X3 [Cyprinus carpio] 6e-188; gi|657745417|ref|XP_008307930.1|PREDICTED: lissencephaly-1 homolog [Cynoglossus semilaevis] 6e-188; gi|1042298603|ref|XP_017345625.1|PREDICTED: lissencephaly-1-like protein A isoform X1 [Ictalurus punctatus] 1e-187; gi|1108914268|ref|XP_019115027.1|PREDICTED: lissencephaly-1 homolog [Larimichthys crocea] 1e-187; gi|974118475|ref|XP_015258802.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Cyprinodon variegatus] 1e-187; gi|1101547493|ref|XP_018939635.1|PREDICTED: lissencephaly-1 homolog A isoform X2 [Cyprinus carpio] 2e-187; gi|1079746469|ref|XP_018542763.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Lates calcarifer] 2e-187;
NvERTx.4.105308 R-1 0.640809439554 E-3 0.999999988531 A7S338 Lissencephaly-1 homolog {ECO:0000255|HAMAP-Rule:MF_03141} gi|156386518|ref|XP_001633959.1|predicted protein [Nematostella vectensis], 4e-108
other nr_hits gi|1005495192|ref|XP_015750206.1|PREDICTED: LOW QUALITY PROTEIN: lissencephaly-1 homolog [Acropora digitifera] 4e-91; gi|432890695|ref|XP_004075482.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Oryzias latipes] 1e-84; gi|657587647|ref|XP_008298124.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Stegastes partitus] 2e-84; gi|974118475|ref|XP_015258802.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Cyprinodon variegatus] 5e-84; gi|831293600|ref|XP_012678444.1|PREDICTED: lissencephaly-1 homolog B [Clupea harengus] 5e-84; gi|1007755288|ref|XP_015817036.1|PREDICTED: lissencephaly-1 homolog B [Nothobranchius furzeri] 7e-84; gi|1109001580|ref|XP_010749592.2|PREDICTED: lissencephaly-1 homolog [Larimichthys crocea] 9e-84; gi|1079746469|ref|XP_018542763.1|PREDICTED: platelet-activating factor acetylhydrolase IB subunit alpha [Lates calcarifer] 9e-84; gi|928046720|ref|XP_013872341.1|PREDICTED: lissencephaly-1 homolog B [Austrofundulus limnaeus] 9e-84;
NvERTx.4.105307 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.114195 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.115882 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122857 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125299 R-1 0.640809439554 E-3 0.999999988531 Q6NRW2 Protein Spindly-B {ECO:0000255|HAMAP-Rule:MF_03041} gi|1005469686|ref|XP_015771738.1|PREDICTED: protein Spindly-B-like [Acropora digitifera], 2e-32
other nr_hits gi|999970735|gb|KXJ09909.1|Protein Spindly [Exaiptasia pallida] 1e-30; gi|1126209089|ref|XP_019638241.1|PREDICTED: protein Spindly-A-like isoform X1 [Branchiostoma belcheri] 1e-14; gi|1126209093|ref|XP_019638243.1|PREDICTED: protein Spindly-like isoform X3 [Branchiostoma belcheri] 1e-14; gi|260783123|ref|XP_002586627.1|hypothetical protein BRAFLDRAFT_106108 [Branchiostoma floridae] 2e-14; gi|585686239|ref|XP_006820291.1|PREDICTED: protein Spindly-like [Saccoglossus kowalevskii] 4e-13; gi|632946152|ref|XP_007888417.1|PREDICTED: protein Spindly [Callorhinchus milii] 2e-10; gi|1033394202|ref|XP_016846896.1|PREDICTED: protein Spindly isoform X1 [Anolis carolinensis] 8e-10; gi|1033394204|ref|XP_016846897.1|PREDICTED: protein Spindly isoform X2 [Anolis carolinensis] 8e-10; gi|695143007|ref|XP_009498767.1|PREDICTED: protein Spindly, partial [Phalacrocorax carbo] 8e-10;
NvERTx.4.125300 R-1 0.640809439554 E-3 0.999999988531 B3DLE8 Protein Spindly {ECO:0000255|HAMAP-Rule:MF_03041} gi|999970735|gb|KXJ09909.1|Protein Spindly [Exaiptasia pallida], 2e-128
other nr_hits gi|1005469686|ref|XP_015771738.1|PREDICTED: protein Spindly-B-like [Acropora digitifera] 2e-114; gi|1126209089|ref|XP_019638241.1|PREDICTED: protein Spindly-A-like isoform X1 [Branchiostoma belcheri] 2e-58; gi|1126209093|ref|XP_019638243.1|PREDICTED: protein Spindly-like isoform X3 [Branchiostoma belcheri] 2e-58; gi|585686239|ref|XP_006820291.1|PREDICTED: protein Spindly-like [Saccoglossus kowalevskii] 3e-53; gi|632946152|ref|XP_007888417.1|PREDICTED: protein Spindly [Callorhinchus milii] 2e-51; gi|919052708|ref|XP_013408273.1|PREDICTED: protein Spindly-like [Lingula anatina] 8e-51; gi|828202602|ref|XP_012555656.1|PREDICTED: protein Spindly-like [Hydra vulgaris] 3e-49; gi|1043427551|gb|OCA40179.1|hypothetical protein XENTR_v90007512mg [Xenopus tropicalis] 8e-48; gi|556964108|ref|XP_005991878.1|PREDICTED: protein Spindly [Latimeria chalumnae] 1e-47;
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