#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.58509 R-2 0.916310724134 E-6 0.999999999702 No_Uniprotmatch No_Description gi|156371350|ref|XP_001628727.1|predicted protein [Nematostella vectensis], 1e-50
other nr_hits NA
NvERTx.4.58510 R-2 0.916310724134 E-6 0.999999999702 P08510 Potassium voltage-gated channel protein Shaker gi|156371350|ref|XP_001628727.1|predicted protein [Nematostella vectensis], 2e-242
other nr_hits gi|999977037|gb|KXJ16211.1|Potassium voltage-gated channel subfamily A member 2 [Exaiptasia pallida] 2e-81; gi|1005465257|ref|XP_015769631.1|PREDICTED: LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily A member 2-like [Acropora digitifera] 5e-74; gi|999972935|gb|KXJ12109.1|Potassium voltage-gated channel protein Shaker [Exaiptasia pallida] 2e-72; gi|156371807|ref|XP_001628953.1|predicted protein [Nematostella vectensis] 4e-72; gi|425892108|gb|AFY09706.1|potassium channel, partial [Nematostella vectensis] 4e-72; gi|828205584|ref|XP_012556663.1|PREDICTED: potassium voltage-gated channel subfamily A member 2-like [Hydra vulgaris] 2e-69; gi|1005440423|ref|XP_015757547.1|PREDICTED: shaker-related potassium channel tsha2-like [Acropora digitifera] 5e-68; gi|999972952|gb|KXJ12126.1|Potassium voltage-gated channel subfamily A member 2 [Exaiptasia pallida] 4e-67; gi|910318194|ref|XP_013161912.1|PREDICTED: potassium voltage-gated channel protein Shaker [Papilio xuthus] 4e-67;
NvERTx.4.58511 R-2 0.916310724134 E-6 0.999999999702 Q9I830 Potassium voltage-gated channel subfamily A member 2 gi|156371350|ref|XP_001628727.1|predicted protein [Nematostella vectensis], 3e-280
other nr_hits gi|999977037|gb|KXJ16211.1|Potassium voltage-gated channel subfamily A member 2 [Exaiptasia pallida] 3e-95; gi|1005465257|ref|XP_015769631.1|PREDICTED: LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily A member 2-like [Acropora digitifera] 3e-84; gi|999972935|gb|KXJ12109.1|Potassium voltage-gated channel protein Shaker [Exaiptasia pallida] 3e-83; gi|156371807|ref|XP_001628953.1|predicted protein [Nematostella vectensis] 1e-82; gi|425892108|gb|AFY09706.1|potassium channel, partial [Nematostella vectensis] 1e-82; gi|1005440423|ref|XP_015757547.1|PREDICTED: shaker-related potassium channel tsha2-like [Acropora digitifera] 1e-80; gi|828205584|ref|XP_012556663.1|PREDICTED: potassium voltage-gated channel subfamily A member 2-like [Hydra vulgaris] 1e-79; gi|1005440053|ref|XP_015757368.1|PREDICTED: potassium voltage-gated channel subfamily A member 2-like isoform X1 [Acropora digitifera] 6e-78; gi|1005440059|ref|XP_015757370.1|PREDICTED: potassium voltage-gated channel subfamily A member 2-like isoform X2 [Acropora digitifera] 6e-78;
NvERTx.4.57240 R-8 0.529190843006 E-6 0.999999999697 A0A093GRL4_PICPB Uncharacterized protein {ECO:0000313|EMBL:KFV69429.1} gi|156351442|ref|XP_001622513.1|predicted protein [Nematostella vectensis], 3e-36
other nr_hits gi|156395153|ref|XP_001636976.1|predicted protein [Nematostella vectensis] 6e-35; gi|678202447|gb|KFV69429.1|hypothetical protein N307_05007, partial [Picoides pubescens] 3e-08; gi|449272077|gb|EMC82179.1|hypothetical protein A306_09877, partial [Columba livia] 4e-05;
NvERTx.4.57241 R-8 0.529190843006 E-6 0.999999999697 A0A093GRL4_PICPB Uncharacterized protein {ECO:0000313|EMBL:KFV69429.1} gi|156351442|ref|XP_001622513.1|predicted protein [Nematostella vectensis], 3e-40
other nr_hits gi|156395153|ref|XP_001636976.1|predicted protein [Nematostella vectensis] 7e-40; gi|678202447|gb|KFV69429.1|hypothetical protein N307_05007, partial [Picoides pubescens] 2e-09; gi|1124516477|ref|WP_074800630.1|urea ABC transporter substrate-binding protein [Pseudomonas cannabina] 3e-06; gi|1126161130|ref|XP_019628575.1|PREDICTED: protein diaphanous homolog 1-like [Branchiostoma belcheri] 4e-06; gi|449272077|gb|EMC82179.1|hypothetical protein A306_09877, partial [Columba livia] 2e-05; gi|156378445|ref|XP_001631153.1|predicted protein [Nematostella vectensis] 3e-05; gi|871204726|ref|XP_012941352.1|PREDICTED: uncharacterized protein LOC101859446 [Aplysia californica] 3e-05; gi|736484920|ref|WP_034504523.1|type IV secretion protein Rhs [Actinomyces sp. ICM47] 3e-05; gi|395548436|gb|EJG15699.1|hypothetical protein HMPREF1136_1426 [Actinomyces sp. ICM47] 3e-05;
NvERTx.4.37535 R-2 0.794145579997 E-6 0.999999999696 No_Uniprotmatch No_Description gi|156335440|ref|XP_001619583.1|hypothetical protein NEMVEDRAFT_v1g150915 [Nematostella vectensis], 1e-23
other nr_hits NA
NvERTx.4.37536 R-2 0.794145579997 E-6 0.999999999696 No_Uniprotmatch No_Description gi|156335440|ref|XP_001619583.1|hypothetical protein NEMVEDRAFT_v1g150915 [Nematostella vectensis], 1e-18
other nr_hits NA
NvERTx.4.37537 R-2 0.794145579997 E-6 0.999999999696 No_Uniprotmatch No_Description gi|156335440|ref|XP_001619583.1|hypothetical protein NEMVEDRAFT_v1g150915 [Nematostella vectensis], 8e-25
other nr_hits NA
NvERTx.4.11525 R-2 0.95131759862 E-6 0.999999999693 No_Uniprotmatch No_Description gi|156402664|ref|XP_001639710.1|predicted protein [Nematostella vectensis], 3e-37
other nr_hits gi|156402666|ref|XP_001639711.1|predicted protein [Nematostella vectensis] 2e-31;
NvERTx.4.96566 R-2 0.95131759862 E-6 0.999999999693 No_Uniprotmatch No_Description gi|156402664|ref|XP_001639710.1|predicted protein [Nematostella vectensis], 7e-29
other nr_hits gi|156402666|ref|XP_001639711.1|predicted protein [Nematostella vectensis] 1e-24;
NvERTx.4.96570 R-2 0.95131759862 E-6 0.999999999693 No_Uniprotmatch No_Description gi|156402664|ref|XP_001639710.1|predicted protein [Nematostella vectensis], 1e-54
other nr_hits gi|156402666|ref|XP_001639711.1|predicted protein [Nematostella vectensis] 3e-52;
NvERTx.4.96571 R-2 0.95131759862 E-6 0.999999999693 No_Uniprotmatch No_Description gi|156402664|ref|XP_001639710.1|predicted protein [Nematostella vectensis], 2e-50
other nr_hits gi|156402666|ref|XP_001639711.1|predicted protein [Nematostella vectensis] 6e-48;
NvERTx.4.96572 R-2 0.95131759862 E-6 0.999999999693 No_Uniprotmatch No_Description gi|156402664|ref|XP_001639710.1|predicted protein [Nematostella vectensis], 1e-22
other nr_hits gi|156402666|ref|XP_001639711.1|predicted protein [Nematostella vectensis] 8e-20;
NvERTx.4.96573 R-2 0.95131759862 E-6 0.999999999693 No_Uniprotmatch No_Description gi|156402664|ref|XP_001639710.1|predicted protein [Nematostella vectensis], 4e-22
other nr_hits gi|156402666|ref|XP_001639711.1|predicted protein [Nematostella vectensis] 2e-18;
NvERTx.4.143221 R-3 0.704024346034 E-6 0.99999999969 Q2PC93 SCO-spondin gi|156372748|ref|XP_001629198.1|predicted protein [Nematostella vectensis], 4e-123
other nr_hits gi|1005442362|ref|XP_015758516.1|PREDICTED: uncharacterized protein LOC107337794 [Acropora digitifera] 1e-73; gi|1005468924|ref|XP_015771379.1|PREDICTED: uncharacterized protein LOC107349709 [Acropora digitifera] 1e-73; gi|999988355|gb|KXJ27447.1|WD repeat-containing protein 91 [Exaiptasia pallida] 8e-28; gi|828204709|ref|XP_012556353.1|PREDICTED: uncharacterized protein LOC105844364 [Hydra vulgaris] 1e-19; gi|1005422368|ref|XP_015766299.1|PREDICTED: uncharacterized protein LOC107345109 [Acropora digitifera] 4e-12; gi|828198372|ref|XP_012554220.1|PREDICTED: uncharacterized protein LOC100201520, partial [Hydra vulgaris] 2e-10; gi|999989431|gb|KXJ28469.1|Hemicentin-1 [Exaiptasia pallida] 1e-09; gi|1005475694|ref|XP_015774605.1|PREDICTED: uncharacterized protein LOC107352806 [Acropora digitifera] 1e-08; gi|828232999|ref|XP_012565648.1|PREDICTED: coadhesin-like, partial [Hydra vulgaris] 1e-08;
NvERTx.4.143230 R-3 0.704024346034 E-6 0.99999999969 A0A1S3IMT2_LINUN SCO-spondin-like isoform X4 {ECO:0000313|RefSeq:XP_013398844.1} gi|156372748|ref|XP_001629198.1|predicted protein [Nematostella vectensis], 3e-75
other nr_hits gi|999988355|gb|KXJ27447.1|WD repeat-containing protein 91 [Exaiptasia pallida] 2e-17; gi|1005442362|ref|XP_015758516.1|PREDICTED: uncharacterized protein LOC107337794 [Acropora digitifera] 4e-15; gi|1005468924|ref|XP_015771379.1|PREDICTED: uncharacterized protein LOC107349709 [Acropora digitifera] 4e-15; gi|919030316|ref|XP_013398840.1|PREDICTED: SCO-spondin-like isoform X1 [Lingula anatina] 7e-06; gi|919030319|ref|XP_013398842.1|PREDICTED: SCO-spondin-like isoform X2 [Lingula anatina] 7e-06; gi|919030321|ref|XP_013398843.1|PREDICTED: SCO-spondin-like isoform X3 [Lingula anatina] 7e-06; gi|919030324|ref|XP_013398844.1|PREDICTED: SCO-spondin-like isoform X4 [Lingula anatina] 7e-06; gi|919030327|ref|XP_013398845.1|PREDICTED: SCO-spondin-like isoform X5 [Lingula anatina] 7e-06; gi|919030329|ref|XP_013398846.1|PREDICTED: SCO-spondin-like isoform X6 [Lingula anatina] 7e-06;
NvERTx.4.143222 R-3 0.704024346034 E-6 0.99999999969 No_Uniprotmatch No_Description gi|156372748|ref|XP_001629198.1|predicted protein [Nematostella vectensis], 9e-37
other nr_hits NA
NvERTx.4.143223 R-3 0.704024346034 E-6 0.99999999969 No_Uniprotmatch No_Description gi|156372748|ref|XP_001629198.1|predicted protein [Nematostella vectensis], 9e-37
other nr_hits NA
NvERTx.4.143224 R-3 0.704024346034 E-6 0.99999999969 Q2PC93 SCO-spondin gi|156372748|ref|XP_001629198.1|predicted protein [Nematostella vectensis], 4e-123
other nr_hits gi|1005442362|ref|XP_015758516.1|PREDICTED: uncharacterized protein LOC107337794 [Acropora digitifera] 1e-73; gi|1005468924|ref|XP_015771379.1|PREDICTED: uncharacterized protein LOC107349709 [Acropora digitifera] 1e-73; gi|999988355|gb|KXJ27447.1|WD repeat-containing protein 91 [Exaiptasia pallida] 8e-28; gi|828204709|ref|XP_012556353.1|PREDICTED: uncharacterized protein LOC105844364 [Hydra vulgaris] 1e-19; gi|1005422368|ref|XP_015766299.1|PREDICTED: uncharacterized protein LOC107345109 [Acropora digitifera] 4e-12; gi|828198372|ref|XP_012554220.1|PREDICTED: uncharacterized protein LOC100201520, partial [Hydra vulgaris] 2e-10; gi|999989431|gb|KXJ28469.1|Hemicentin-1 [Exaiptasia pallida] 1e-09; gi|1005475694|ref|XP_015774605.1|PREDICTED: uncharacterized protein LOC107352806 [Acropora digitifera] 1e-08; gi|828232999|ref|XP_012565648.1|PREDICTED: coadhesin-like, partial [Hydra vulgaris] 1e-08;
NvERTx.4.143225 R-3 0.704024346034 E-6 0.99999999969 No_Uniprotmatch No_Description gi|156372748|ref|XP_001629198.1|predicted protein [Nematostella vectensis], 9e-37
other nr_hits NA
NvERTx.4.143226 R-3 0.704024346034 E-6 0.99999999969 A0A1S3IMT2_LINUN SCO-spondin-like isoform X4 {ECO:0000313|RefSeq:XP_013398844.1} gi|156372748|ref|XP_001629198.1|predicted protein [Nematostella vectensis], 3e-75
other nr_hits gi|999988355|gb|KXJ27447.1|WD repeat-containing protein 91 [Exaiptasia pallida] 2e-17; gi|1005442362|ref|XP_015758516.1|PREDICTED: uncharacterized protein LOC107337794 [Acropora digitifera] 4e-15; gi|1005468924|ref|XP_015771379.1|PREDICTED: uncharacterized protein LOC107349709 [Acropora digitifera] 4e-15; gi|919030316|ref|XP_013398840.1|PREDICTED: SCO-spondin-like isoform X1 [Lingula anatina] 7e-06; gi|919030319|ref|XP_013398842.1|PREDICTED: SCO-spondin-like isoform X2 [Lingula anatina] 7e-06; gi|919030321|ref|XP_013398843.1|PREDICTED: SCO-spondin-like isoform X3 [Lingula anatina] 7e-06; gi|919030324|ref|XP_013398844.1|PREDICTED: SCO-spondin-like isoform X4 [Lingula anatina] 7e-06; gi|919030327|ref|XP_013398845.1|PREDICTED: SCO-spondin-like isoform X5 [Lingula anatina] 7e-06; gi|919030329|ref|XP_013398846.1|PREDICTED: SCO-spondin-like isoform X6 [Lingula anatina] 7e-06;
NvERTx.4.143227 R-3 0.704024346034 E-6 0.99999999969 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143228 R-3 0.704024346034 E-6 0.99999999969 No_Uniprotmatch No_Description gi|156372748|ref|XP_001629198.1|predicted protein [Nematostella vectensis], 9e-37
other nr_hits NA
NvERTx.4.143229 R-3 0.704024346034 E-6 0.99999999969 No_Uniprotmatch No_Description gi|156372748|ref|XP_001629198.1|predicted protein [Nematostella vectensis], 9e-37
other nr_hits NA
NvERTx.4.143240 R-3 0.704024346034 E-6 0.99999999969 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.99620 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.99621 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103675 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103676 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103677 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103678 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103679 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103680 R-1 0.792490446314 E-6 0.999999999688 P0CP00 Myosin-1 gi|156353245|ref|XP_001622983.1|predicted protein [Nematostella vectensis], 2e-23
other nr_hits gi|589284850|ref|XP_007008155.1|hypothetical protein TREMEDRAFT_70354 [Tremella mesenterica DSM 1558] 3e-06; gi|757348169|gb|KIR54031.1|myosin-1 [Cryptococcus gattii Ru294] 1e-05; gi|757353844|gb|KIR59675.1|myosin-1 [Cryptococcus gattii CA1873] 1e-05; gi|757340296|gb|KIR46240.1|myosin-1 [Cryptococcus gattii CA1280] 1e-05; gi|686627608|gb|KGB78686.1|myosin-1 [Cryptococcus gattii VGII R265] 1e-05; gi|999975400|gb|KXJ14574.1|SH3 and PX domain-containing protein 2A [Exaiptasia pallida] 2e-05; gi|757397038|gb|KIS02334.1|myosin-1 [Cryptococcus gattii VGII 2001/935-1] 2e-05; gi|757379961|gb|KIR85315.1|myosin-1 [Cryptococcus gattii VGIV IND107] 2e-05; gi|1101813127|ref|XP_019003020.1|myosin-1 [Kwoniella mangroviensis CBS 8507] 3e-05;
NvERTx.4.103681 R-1 0.792490446314 E-6 0.999999999688 P0CP00 Myosin-1 gi|156353245|ref|XP_001622983.1|predicted protein [Nematostella vectensis], 1e-26
other nr_hits gi|999975400|gb|KXJ14574.1|SH3 and PX domain-containing protein 2A [Exaiptasia pallida] 8e-06; gi|589284850|ref|XP_007008155.1|hypothetical protein TREMEDRAFT_70354 [Tremella mesenterica DSM 1558] 1e-05;
NvERTx.4.103682 R-1 0.792490446314 E-6 0.999999999688 O77774 Neutrophil cytosol factor 1 gi|999975400|gb|KXJ14574.1|SH3 and PX domain-containing protein 2A [Exaiptasia pallida], 4e-07
other nr_hits gi|1005477074|ref|XP_015775298.1|PREDICTED: SH3 and PX domain-containing protein 2A-like [Acropora digitifera] 6e-06; gi|780161510|ref|XP_011683171.1|PREDICTED: SH3 and PX domain-containing protein 2A isoform X4 [Strongylocentrotus purpuratus] 1e-05; gi|780161499|ref|XP_011683168.1|PREDICTED: SH3 and PX domain-containing protein 2A isoform X1 [Strongylocentrotus purpuratus] 1e-05; gi|780161506|ref|XP_011683170.1|PREDICTED: SH3 and PX domain-containing protein 2A isoform X3 [Strongylocentrotus purpuratus] 1e-05; gi|156353245|ref|XP_001622983.1|predicted protein [Nematostella vectensis] 3e-05;
NvERTx.4.103683 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123198 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123207 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123199 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123200 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123201 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description gi|156353245|ref|XP_001622983.1|predicted protein [Nematostella vectensis], 6e-19
other nr_hits NA
NvERTx.4.123202 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123205 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description gi|156353245|ref|XP_001622983.1|predicted protein [Nematostella vectensis], 6e-19
other nr_hits NA
NvERTx.4.123206 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123209 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description gi|156353245|ref|XP_001622983.1|predicted protein [Nematostella vectensis], 2e-29
other nr_hits NA
NvERTx.4.144096 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144097 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185283 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201280 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201283 R-1 0.792490446314 E-6 0.999999999688 No_Uniprotmatch No_Description None
other nr_hits NA
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