#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

Search by gene name


Search by NvERTx ID





Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.55833 R-6 0.532364473386 E-6 0.999999999978 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.59874 R-6 0.532364473386 E-6 0.999999999978 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.59876 R-6 0.532364473386 E-6 0.999999999978 R7UTS1_CAPTE Uncharacterized protein {ECO:0000313|EMBL:ELU07332.1, ECO:0000313|EnsemblMetazoa:CapteP186774} gi|156358185|ref|XP_001624404.1|predicted protein [Nematostella vectensis], 1e-116
other nr_hits gi|156381198|ref|XP_001632153.1|predicted protein [Nematostella vectensis] 2e-11; gi|999972974|gb|KXJ12148.1|hypothetical protein AC249_AIPGENE28615 [Exaiptasia pallida] 2e-08; gi|999970945|gb|KXJ10119.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 3e-08; gi|999981089|gb|KXJ20263.1|hypothetical protein AC249_AIPGENE16570 [Exaiptasia pallida] 4e-08; gi|1005464934|ref|XP_015769478.1|PREDICTED: uncharacterized protein LOC107347994 [Acropora digitifera] 5e-08; gi|999976321|gb|KXJ15495.1|putative RNA-directed DNA polymerase from transposon BS [Exaiptasia pallida] 2e-07; gi|999979202|gb|KXJ18376.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 2e-07; gi|999982324|gb|KXJ21474.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 2e-07; gi|999968630|gb|KXJ07804.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 2e-07;
NvERTx.4.59877 R-6 0.532364473386 E-6 0.999999999978 No_Uniprotmatch No_Description gi|156358185|ref|XP_001624404.1|predicted protein [Nematostella vectensis], 7e-65
other nr_hits NA
NvERTx.4.131959 R-6 0.532364473386 E-6 0.999999999978 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201770 R-6 0.532364473386 E-6 0.999999999978 No_Uniprotmatch No_Description gi|999988976|gb|KXJ28040.1|Serine/threonine-protein kinase Chk1 [Exaiptasia pallida], 2e-12
other nr_hits NA
NvERTx.4.213608 R-6 0.532364473386 E-6 0.999999999978 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91695 R-2 0.9999427828 E-6 0.999999999977 C3ZH25_BRAFL Putative uncharacterized protein {ECO:0000313|EMBL:EEN48172.1} gi|156399648|ref|XP_001638613.1|predicted protein [Nematostella vectensis], 5e-171
other nr_hits gi|1005455709|ref|XP_015764986.1|PREDICTED: uncharacterized protein LOC107343909 isoform X1 [Acropora digitifera] 5e-42; gi|1005455711|ref|XP_015764987.1|PREDICTED: uncharacterized protein LOC107343909 isoform X2 [Acropora digitifera] 5e-42; gi|999974515|gb|KXJ13689.1|Collagen alpha-1(XII) chain [Exaiptasia pallida] 9e-34; gi|999972515|gb|KXJ11689.1|Collagen alpha-1(XII) chain [Exaiptasia pallida] 2e-22; gi|828211859|ref|XP_012558797.1|PREDICTED: uncharacterized protein LOC105845509 [Hydra vulgaris] 7e-21; gi|999987039|gb|KXJ26164.1|Vitrin [Exaiptasia pallida] 7e-20; gi|1005464333|ref|XP_015769180.1|PREDICTED: uncharacterized protein LOC107347737 [Acropora digitifera] 4e-19; gi|1126161359|ref|XP_019629805.1|PREDICTED: uncharacterized protein LOC109474031 [Branchiostoma belcheri] 1e-17; gi|999986394|gb|KXJ25533.1|hypothetical protein AC249_AIPGENE14403 [Exaiptasia pallida] 2e-17;
NvERTx.4.91696 R-2 0.9999427828 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91697 R-2 0.9999427828 E-6 0.999999999977 Q8VHI5 Vitrin gi|156399648|ref|XP_001638613.1|predicted protein [Nematostella vectensis], 5e-107
other nr_hits gi|1005455709|ref|XP_015764986.1|PREDICTED: uncharacterized protein LOC107343909 isoform X1 [Acropora digitifera] 5e-41; gi|1005464333|ref|XP_015769180.1|PREDICTED: uncharacterized protein LOC107347737 [Acropora digitifera] 1e-26; gi|156402479|ref|XP_001639618.1|predicted protein [Nematostella vectensis] 7e-26; gi|1005418415|ref|XP_015751706.1|PREDICTED: uncharacterized protein LOC107331580 [Acropora digitifera] 1e-25; gi|999987014|gb|KXJ26139.1|Collagen alpha-1(XII) chain [Exaiptasia pallida] 1e-25; gi|156402981|ref|XP_001639868.1|predicted protein [Nematostella vectensis] 3e-25; gi|156409373|ref|XP_001642144.1|predicted protein [Nematostella vectensis] 3e-25; gi|156358483|ref|XP_001624548.1|predicted protein [Nematostella vectensis] 5e-25; gi|1041092159|ref|XP_017268547.1|PREDICTED: collagen alpha-1(XXI) chain-like isoform X1 [Kryptolebias marmoratus] 8e-25;
NvERTx.4.91698 R-2 0.9999427828 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156399648|ref|XP_001638613.1|predicted protein [Nematostella vectensis], 4e-18
other nr_hits NA
NvERTx.4.91699 R-2 0.9999427828 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156399648|ref|XP_001638613.1|predicted protein [Nematostella vectensis], 6e-28
other nr_hits NA
NvERTx.4.217707 R-2 0.9999427828 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156399648|ref|XP_001638613.1|predicted protein [Nematostella vectensis], 5e-50
other nr_hits NA
NvERTx.4.221585 R-2 0.9999427828 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156399648|ref|XP_001638613.1|predicted protein [Nematostella vectensis], 1e-20
other nr_hits NA
NvERTx.4.222211 R-2 0.9999427828 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156399648|ref|XP_001638613.1|predicted protein [Nematostella vectensis], 4e-62
other nr_hits NA
NvERTx.4.743 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.744 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 2e-31
other nr_hits NA
NvERTx.4.85014 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 1e-25
other nr_hits NA
NvERTx.4.85005 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85006 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85007 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85008 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161081 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169017 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 3e-166
other nr_hits NA
NvERTx.4.169026 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 1e-19;
NvERTx.4.169027 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 2e-306
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 5e-14;
NvERTx.4.169028 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 7e-303
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 5e-14;
NvERTx.4.169029 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 2e-306
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 5e-14;
NvERTx.4.169030 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 2e-306
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 5e-14;
NvERTx.4.169018 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 1e-19;
NvERTx.4.169019 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 2e-18;
NvERTx.4.169020 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 7e-303
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 5e-14;
NvERTx.4.169021 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 1e-19;
NvERTx.4.169022 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 2e-306
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 5e-14;
NvERTx.4.169023 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 1e-19;
NvERTx.4.169024 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 2e-18;
NvERTx.4.169025 R-4 0.947083508395 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156400880|ref|XP_001639020.1|predicted protein [Nematostella vectensis], 7e-303
other nr_hits gi|999981634|gb|KXJ20808.1|hypothetical protein AC249_AIPGENE15754 [Exaiptasia pallida] 5e-14;
NvERTx.4.12290 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.29692 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156370270|ref|XP_001628394.1|predicted protein [Nematostella vectensis], 2e-52
other nr_hits gi|156329275|ref|XP_001618989.1|hypothetical protein NEMVEDRAFT_v1g224627 [Nematostella vectensis] 7e-12; gi|999969638|gb|KXJ08812.1|hypothetical protein AC249_AIPGENE11023 [Exaiptasia pallida] 4e-06;
NvERTx.4.29693 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91970 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91972 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91973 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91975 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203484 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156370270|ref|XP_001628394.1|predicted protein [Nematostella vectensis], 2e-20
other nr_hits NA
NvERTx.4.203485 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description gi|156370270|ref|XP_001628394.1|predicted protein [Nematostella vectensis], 1e-20
other nr_hits NA
NvERTx.4.215237 R-2 0.964047647824 E-6 0.999999999977 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.51333 R-1 0.642308119142 E-6 0.999999999977 O13023 Hematopoietically-expressed homeobox protein hhex gi|1149120485|embl|SJX71951.1|Hex homeobox transcription factor [Nematostella vectensis], 2e-102
other nr_hits gi|999975259|gb|KXJ14433.1|Hematopoietically-expressed homeobox protein hhex [Exaiptasia pallida] 8e-75; gi|1005462915|ref|XP_015768486.1|PREDICTED: hematopoietically-expressed homeobox protein hhex-like [Acropora digitifera] 3e-72; gi|1002575376|ref|XP_015666779.1|PREDICTED: hematopoietically-expressed homeobox protein HHEX [Protobothrops mucrosquamatus] 2e-30; gi|327278150|ref|XP_003223825.1|PREDICTED: hematopoietically-expressed homeobox protein HHEX [Anolis carolinensis] 6e-30; gi|471358823|ref|XP_004369992.1|PREDICTED: hematopoietically-expressed homeobox protein HHEX [Trichechus manatus latirostris] 1e-29; gi|702118336|gb|AIW08711.1|Hex [Scyliorhinus canicula] 1e-29; gi|634877290|ref|XP_007949456.1|PREDICTED: hematopoietically-expressed homeobox protein HHEX [Orycteropus afer afer] 2e-29; gi|148223155|ref|NP_001079059.1|hematopoietically-expressed homeobox protein hhex [Xenopus laevis] 4e-29; gi|632936396|ref|XP_007894752.1|PREDICTED: hematopoietically-expressed homeobox protein HHEX [Callorhinchus milii] 5e-29;
NvERTx.4.210955 R-1 0.642308119142 E-6 0.999999999977 D2KQB0 Hematopoietically-expressed homeobox protein HHEX homolog gi|1149120485|embl|SJX71951.1|Hex homeobox transcription factor [Nematostella vectensis], 1e-32
other nr_hits gi|1005462915|ref|XP_015768486.1|PREDICTED: hematopoietically-expressed homeobox protein hhex-like [Acropora digitifera] 3e-24; gi|999975259|gb|KXJ14433.1|Hematopoietically-expressed homeobox protein hhex [Exaiptasia pallida] 3e-20; gi|82621619|gb|ABB86481.1|HHEX-ANTP class homeobox protein, partial [Nematostella vectensis] 1e-18; gi|471358823|ref|XP_004369992.1|PREDICTED: hematopoietically-expressed homeobox protein HHEX [Trichechus manatus latirostris] 4e-18; gi|702118336|gb|AIW08711.1|Hex [Scyliorhinus canicula] 5e-18; gi|410929283|ref|XP_003978029.1|PREDICTED: hematopoietically-expressed homeobox protein HHEX [Takifugu rubripes] 7e-18; gi|1072258016|ref|XP_018414188.1|PREDICTED: hematopoietically-expressed homeobox protein HHEX [Nanorana parkeri] 9e-18; gi|1002575376|ref|XP_015666779.1|PREDICTED: hematopoietically-expressed homeobox protein HHEX [Protobothrops mucrosquamatus] 9e-18; gi|821451889|ref|XP_012395794.1|PREDICTED: LOW QUALITY PROTEIN: hematopoietically-expressed homeobox protein HHEX [Sarcophilus harrisii] 9e-18;
NvERTx.4.142002 R-9 0.99931723479 E-6 0.999999999977 No_Uniprotmatch No_Description gi|999973915|gb|KXJ13089.1|hypothetical protein AC249_AIPGENE20018 [Exaiptasia pallida], 8e-230
other nr_hits gi|156362328|ref|XP_001625731.1|predicted protein [Nematostella vectensis] 2e-206; gi|999983485|gb|KXJ22626.1|hypothetical protein AC249_AIPGENE26568 [Exaiptasia pallida] 5e-173; gi|1005427186|ref|XP_015751377.1|PREDICTED: uncharacterized protein LOC107331317 [Acropora digitifera] 1e-172; gi|156362326|ref|XP_001625730.1|predicted protein [Nematostella vectensis] 1e-168; gi|999975903|gb|KXJ15077.1|hypothetical protein AC249_AIPGENE648 [Exaiptasia pallida] 1e-166; gi|999983480|gb|KXJ22621.1|hypothetical protein AC249_AIPGENE26624 [Exaiptasia pallida] 6e-166; gi|1005460245|ref|XP_015767203.1|PREDICTED: uncharacterized protein LOC107345966 isoform X3 [Acropora digitifera] 7e-165; gi|156383604|ref|XP_001632923.1|predicted protein [Nematostella vectensis] 2e-164; gi|1005460247|ref|XP_015767204.1|PREDICTED: uncharacterized protein LOC107345966 isoform X4 [Acropora digitifera] 7e-163;
More