#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.50428 R-9 0.180044039232 E-6 0.999994267899 No_Uniprotmatch No_Description gi|156398434|ref|XP_001638193.1|predicted protein [Nematostella vectensis], 7e-52
other nr_hits NA
NvERTx.4.50429 R-9 0.180044039232 E-6 0.999994267899 A0A0E3NPH1_9EURY Ankyrin repeat protein {ECO:0000313|EMBL:AKB20727.1} gi|805336048|gb|AKB17330.1|Ankyrin repeat protein [Methanosarcina sp. WWM596], 6e-07
other nr_hits gi|156339318|ref|XP_001620139.1|hypothetical protein NEMVEDRAFT_v1g149002 [Nematostella vectensis] 1e-05;
NvERTx.4.50430 R-9 0.180044039232 E-6 0.999994267899 No_Uniprotmatch No_Description gi|156398434|ref|XP_001638193.1|predicted protein [Nematostella vectensis], 4e-40
other nr_hits NA
NvERTx.4.50431 R-9 0.180044039232 E-6 0.999994267899 A0A0E3NPH1_9EURY Ankyrin repeat protein {ECO:0000313|EMBL:AKB20727.1} gi|156339318|ref|XP_001620139.1|hypothetical protein NEMVEDRAFT_v1g149002 [Nematostella vectensis], 3e-09
other nr_hits gi|805336048|gb|AKB17330.1|Ankyrin repeat protein [Methanosarcina sp. WWM596] 5e-07; gi|156404502|ref|XP_001640446.1|predicted protein [Nematostella vectensis] 9e-07; gi|156371669|ref|XP_001628885.1|predicted protein [Nematostella vectensis] 3e-06; gi|294865707|ref|XP_002764470.1|hypothetical protein Pmar_PMAR000302 [Perkinsus marinus ATCC 50983] 7e-06;
NvERTx.4.50432 R-9 0.180044039232 E-6 0.999994267899 A0A177SBZ2_9BACL Uncharacterized protein {ECO:0000313|EMBL:OAI84109.1} gi|156398434|ref|XP_001638193.1|predicted protein [Nematostella vectensis], 4e-80
other nr_hits gi|602666774|ref|XP_007438957.1|PREDICTED: basic proline-rich protein-like [Python bivittatus] 1e-08; gi|1110682563|ref|WP_071908840.1|hypothetical protein [Exiguobacterium sp. ZWU0009] 2e-08; gi|1072318043|ref|WP_069940103.1|hypothetical protein [Exiguobacterium sp. U13-1] 9e-08; gi|1032728855|ref|WP_064300728.1|hypothetical protein [Exiguobacterium sp. KKBO11] 9e-08; gi|908494333|ref|XP_013096521.1|PREDICTED: extensin-like [Biomphalaria glabrata] 4e-07; gi|1108465103|embl|CRL06646.1|CLUMA_CG019527, isoform A [Clunio marinus] 6e-07; gi|976926838|gb|KVI10682.1|Organ specific protein [Cynara cardunculus var. scolymus] 3e-06; gi|1134898434|gb|OMJ95585.1|hypothetical protein SteCoe_1005 [Stentor coeruleus] 1e-05; gi|1098920781|gb|JAU10980.1|hypothetical protein GA_TR11446_c0_g1_i1_g.36754, partial [Noccaea caerulescens] 1e-05;
NvERTx.4.50433 R-9 0.180044039232 E-6 0.999994267899 A0A1J1J5A0_9DIPT CLUMA_CG019527, isoform A {ECO:0000313|EMBL:CRL06646.1} gi|156398434|ref|XP_001638193.1|predicted protein [Nematostella vectensis], 1e-63
other nr_hits gi|602666774|ref|XP_007438957.1|PREDICTED: basic proline-rich protein-like [Python bivittatus] 4e-06; gi|1110682563|ref|WP_071908840.1|hypothetical protein [Exiguobacterium sp. ZWU0009] 4e-05; gi|1072318043|ref|WP_069940103.1|hypothetical protein [Exiguobacterium sp. U13-1] 4e-05; gi|1108465103|embl|CRL06646.1|CLUMA_CG019527, isoform A [Clunio marinus] 5e-05;