#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.186685 R-9 0.342181235208 E-1 0.999999999998 Q6P1M0 Long-chain fatty acid transport protein 4 gi|156390853|ref|XP_001635484.1|predicted protein [Nematostella vectensis], 3e-106
other nr_hits gi|999977485|gb|KXJ16659.1|Long-chain fatty acid transport protein 4 [Exaiptasia pallida] 8e-68; gi|999977455|gb|KXJ16629.1|Long-chain fatty acid transport protein 4 [Exaiptasia pallida] 1e-60; gi|926489497|ref|XP_013811409.1|PREDICTED: long-chain fatty acid transport protein 4 isoform X1 [Apteryx australis mantelli] 2e-60; gi|541978986|ref|XP_005442129.1|PREDICTED: LOW QUALITY PROTEIN: long-chain fatty acid transport protein 4 [Falco cherrug] 2e-60; gi|971423093|ref|XP_015135039.1|PREDICTED: long-chain fatty acid transport protein 4 [Gallus gallus] 3e-60; gi|543367848|ref|XP_005527274.1|PREDICTED: long-chain fatty acid transport protein 4 [Pseudopodoces humilis] 3e-60; gi|326930262|ref|XP_003211267.1|PREDICTED: long-chain fatty acid transport protein 4 [Meleagris gallopavo] 3e-60; gi|1049370746|ref|XP_017600910.1|PREDICTED: long-chain fatty acid transport protein 4 [Corvus brachyrhynchos] 4e-60; gi|727012555|ref|XP_010395987.1|PREDICTED: long-chain fatty acid transport protein 4 [Corvus cornix cornix] 4e-60;
NvERTx.4.121511 R-9 0.340911317611 E-7 0.999999720118 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121512 R-9 0.340911317611 E-7 0.999999720118 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121513 R-9 0.340911317611 E-7 0.999999720118 No_Uniprotmatch No_Description gi|156372534|ref|XP_001629092.1|predicted protein [Nematostella vectensis], 8e-28
other nr_hits NA
NvERTx.4.6355 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.7457 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.7458 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.16354 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.19060 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.19061 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.22757 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.27024 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.29427 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.36971 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.2949 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.42747 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.47683 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.65354 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.65355 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.65356 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.65602 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.79619 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98214 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description gi|156368849|ref|XP_001627904.1|predicted protein [Nematostella vectensis], 1e-16
other nr_hits NA
NvERTx.4.98219 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106381 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112541 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112549 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116315 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118681 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124664 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144563 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146963 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description gi|156368849|ref|XP_001627904.1|predicted protein [Nematostella vectensis], 1e-72
other nr_hits gi|1005477734|ref|XP_015775635.1|PREDICTED: uncharacterized protein LOC107353762 [Acropora digitifera] 2e-21;
NvERTx.4.146964 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description gi|156368849|ref|XP_001627904.1|predicted protein [Nematostella vectensis], 9e-111
other nr_hits gi|1005477734|ref|XP_015775635.1|PREDICTED: uncharacterized protein LOC107353762 [Acropora digitifera] 4e-23; gi|999966388|gb|KXJ05562.1|hypothetical protein AC249_AIPGENE20089, partial [Exaiptasia pallida] 2e-09; gi|999971760|gb|KXJ10934.1|hypothetical protein AC249_AIPGENE26803 [Exaiptasia pallida] 9e-07;
NvERTx.4.146965 R-9 0.339221155928 E-7 0.99999999493 A0A1S3I017_LINUN uncharacterized protein LOC106159750 {ECO:0000313|RefSeq:XP_013391603.1} gi|156368849|ref|XP_001627904.1|predicted protein [Nematostella vectensis], 3e-202
other nr_hits gi|1005477734|ref|XP_015775635.1|PREDICTED: uncharacterized protein LOC107353762 [Acropora digitifera] 2e-68; gi|999966388|gb|KXJ05562.1|hypothetical protein AC249_AIPGENE20089, partial [Exaiptasia pallida] 1e-64; gi|999971760|gb|KXJ10934.1|hypothetical protein AC249_AIPGENE26803 [Exaiptasia pallida] 5e-62; gi|291237442|ref|XP_002738644.1|PREDICTED: uncharacterized protein LOC100378881 [Saccoglossus kowalevskii] 2e-25; gi|919014285|ref|XP_013391603.1|PREDICTED: uncharacterized protein LOC106159750 [Lingula anatina] 8e-20; gi|871225186|ref|XP_012936594.1|PREDICTED: uncharacterized protein LOC101855718 [Aplysia californica] 1e-18; gi|780024818|ref|XP_011665814.1|PREDICTED: uncharacterized protein LOC576253 isoform X1 [Strongylocentrotus purpuratus] 6e-18; gi|390361253|ref|XP_799892.3|PREDICTED: uncharacterized protein LOC576253 isoform X2 [Strongylocentrotus purpuratus] 6e-18; gi|1126218643|ref|XP_019643427.1|PREDICTED: uncharacterized protein LOC109484548 isoform X2 [Branchiostoma belcheri] 1e-17;
NvERTx.4.146966 R-9 0.339221155928 E-7 0.99999999493 A0A1S3I017_LINUN uncharacterized protein LOC106159750 {ECO:0000313|RefSeq:XP_013391603.1} gi|156368849|ref|XP_001627904.1|predicted protein [Nematostella vectensis], 3e-202
other nr_hits gi|1005477734|ref|XP_015775635.1|PREDICTED: uncharacterized protein LOC107353762 [Acropora digitifera] 2e-68; gi|999966388|gb|KXJ05562.1|hypothetical protein AC249_AIPGENE20089, partial [Exaiptasia pallida] 1e-64; gi|999971760|gb|KXJ10934.1|hypothetical protein AC249_AIPGENE26803 [Exaiptasia pallida] 5e-62; gi|291237442|ref|XP_002738644.1|PREDICTED: uncharacterized protein LOC100378881 [Saccoglossus kowalevskii] 2e-25; gi|919014285|ref|XP_013391603.1|PREDICTED: uncharacterized protein LOC106159750 [Lingula anatina] 8e-20; gi|871225186|ref|XP_012936594.1|PREDICTED: uncharacterized protein LOC101855718 [Aplysia californica] 1e-18; gi|780024818|ref|XP_011665814.1|PREDICTED: uncharacterized protein LOC576253 isoform X1 [Strongylocentrotus purpuratus] 6e-18; gi|390361253|ref|XP_799892.3|PREDICTED: uncharacterized protein LOC576253 isoform X2 [Strongylocentrotus purpuratus] 6e-18; gi|1126218643|ref|XP_019643427.1|PREDICTED: uncharacterized protein LOC109484548 isoform X2 [Branchiostoma belcheri] 1e-17;
NvERTx.4.146967 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description gi|156368849|ref|XP_001627904.1|predicted protein [Nematostella vectensis], 1e-26
other nr_hits gi|1005477734|ref|XP_015775635.1|PREDICTED: uncharacterized protein LOC107353762 [Acropora digitifera] 3e-10;
NvERTx.4.146968 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158926 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170962 R-9 0.339221155928 E-7 0.99999999493 B5X601 DNA repair protein SWI5 homolog gi|999990160|gb|KXJ29188.1|DNA repair protein SWI5-like [Exaiptasia pallida], 4e-25
other nr_hits gi|1005477730|ref|XP_015775633.1|PREDICTED: DNA repair protein SWI5 homolog isoform X5 [Acropora digitifera] 3e-23; gi|583987091|ref|XP_006788780.1|PREDICTED: DNA repair protein SWI5 homolog [Neolamprologus brichardi] 2e-17; gi|742123950|ref|XP_010875662.1|PREDICTED: DNA repair protein SWI5 homolog [Esox lucius] 2e-17; gi|348513745|ref|XP_003444402.1|PREDICTED: DNA repair protein SWI5 homolog [Oreochromis niloticus] 2e-17; gi|1158834246|ref|XP_020325670.1|DNA repair protein SWI5 homolog [Oncorhynchus kisutch] 3e-17; gi|1025123881|ref|XP_016413282.1|PREDICTED: DNA repair protein SWI5 homolog [Sinocyclocheilus rhinocerous] 3e-17; gi|410926763|ref|XP_003976842.1|PREDICTED: DNA repair protein SWI5 homolog [Takifugu rubripes] 3e-17; gi|974077755|ref|XP_015236500.1|PREDICTED: DNA repair protein SWI5 homolog [Cyprinodon variegatus] 5e-17; gi|1020477931|ref|XP_016144315.1|PREDICTED: DNA repair protein SWI5 homolog [Sinocyclocheilus grahami] 9e-17;
NvERTx.4.170963 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170964 R-9 0.339221155928 E-7 0.99999999493 B5X601 DNA repair protein SWI5 homolog gi|999990160|gb|KXJ29188.1|DNA repair protein SWI5-like [Exaiptasia pallida], 4e-25
other nr_hits gi|1005477730|ref|XP_015775633.1|PREDICTED: DNA repair protein SWI5 homolog isoform X5 [Acropora digitifera] 3e-23; gi|583987091|ref|XP_006788780.1|PREDICTED: DNA repair protein SWI5 homolog [Neolamprologus brichardi] 2e-17; gi|742123950|ref|XP_010875662.1|PREDICTED: DNA repair protein SWI5 homolog [Esox lucius] 2e-17; gi|348513745|ref|XP_003444402.1|PREDICTED: DNA repair protein SWI5 homolog [Oreochromis niloticus] 2e-17; gi|1158834246|ref|XP_020325670.1|DNA repair protein SWI5 homolog [Oncorhynchus kisutch] 3e-17; gi|1025123881|ref|XP_016413282.1|PREDICTED: DNA repair protein SWI5 homolog [Sinocyclocheilus rhinocerous] 3e-17; gi|410926763|ref|XP_003976842.1|PREDICTED: DNA repair protein SWI5 homolog [Takifugu rubripes] 3e-17; gi|974077755|ref|XP_015236500.1|PREDICTED: DNA repair protein SWI5 homolog [Cyprinodon variegatus] 5e-17; gi|1020477931|ref|XP_016144315.1|PREDICTED: DNA repair protein SWI5 homolog [Sinocyclocheilus grahami] 9e-17;
NvERTx.4.170966 R-9 0.339221155928 E-7 0.99999999493 B5X601 DNA repair protein SWI5 homolog gi|999990160|gb|KXJ29188.1|DNA repair protein SWI5-like [Exaiptasia pallida], 4e-25
other nr_hits gi|1005477730|ref|XP_015775633.1|PREDICTED: DNA repair protein SWI5 homolog isoform X5 [Acropora digitifera] 3e-23; gi|583987091|ref|XP_006788780.1|PREDICTED: DNA repair protein SWI5 homolog [Neolamprologus brichardi] 2e-17; gi|742123950|ref|XP_010875662.1|PREDICTED: DNA repair protein SWI5 homolog [Esox lucius] 2e-17; gi|348513745|ref|XP_003444402.1|PREDICTED: DNA repair protein SWI5 homolog [Oreochromis niloticus] 2e-17; gi|1158834246|ref|XP_020325670.1|DNA repair protein SWI5 homolog [Oncorhynchus kisutch] 3e-17; gi|1025123881|ref|XP_016413282.1|PREDICTED: DNA repair protein SWI5 homolog [Sinocyclocheilus rhinocerous] 3e-17; gi|410926763|ref|XP_003976842.1|PREDICTED: DNA repair protein SWI5 homolog [Takifugu rubripes] 3e-17; gi|974077755|ref|XP_015236500.1|PREDICTED: DNA repair protein SWI5 homolog [Cyprinodon variegatus] 5e-17; gi|1020477931|ref|XP_016144315.1|PREDICTED: DNA repair protein SWI5 homolog [Sinocyclocheilus grahami] 9e-17;
NvERTx.4.170967 R-9 0.339221155928 E-7 0.99999999493 B5X601 DNA repair protein SWI5 homolog gi|999990160|gb|KXJ29188.1|DNA repair protein SWI5-like [Exaiptasia pallida], 4e-25
other nr_hits gi|1005477730|ref|XP_015775633.1|PREDICTED: DNA repair protein SWI5 homolog isoform X5 [Acropora digitifera] 3e-23; gi|583987091|ref|XP_006788780.1|PREDICTED: DNA repair protein SWI5 homolog [Neolamprologus brichardi] 2e-17; gi|742123950|ref|XP_010875662.1|PREDICTED: DNA repair protein SWI5 homolog [Esox lucius] 2e-17; gi|348513745|ref|XP_003444402.1|PREDICTED: DNA repair protein SWI5 homolog [Oreochromis niloticus] 2e-17; gi|1158834246|ref|XP_020325670.1|DNA repair protein SWI5 homolog [Oncorhynchus kisutch] 3e-17; gi|1025123881|ref|XP_016413282.1|PREDICTED: DNA repair protein SWI5 homolog [Sinocyclocheilus rhinocerous] 3e-17; gi|410926763|ref|XP_003976842.1|PREDICTED: DNA repair protein SWI5 homolog [Takifugu rubripes] 3e-17; gi|974077755|ref|XP_015236500.1|PREDICTED: DNA repair protein SWI5 homolog [Cyprinodon variegatus] 5e-17; gi|1020477931|ref|XP_016144315.1|PREDICTED: DNA repair protein SWI5 homolog [Sinocyclocheilus grahami] 9e-17;
NvERTx.4.187735 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.191114 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194392 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.195718 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.206939 R-9 0.339221155928 E-7 0.99999999493 A0A1S3I017_LINUN uncharacterized protein LOC106159750 {ECO:0000313|RefSeq:XP_013391603.1} gi|156368849|ref|XP_001627904.1|predicted protein [Nematostella vectensis], 1e-24
other nr_hits gi|999966388|gb|KXJ05562.1|hypothetical protein AC249_AIPGENE20089, partial [Exaiptasia pallida] 2e-15; gi|999971760|gb|KXJ10934.1|hypothetical protein AC249_AIPGENE26803 [Exaiptasia pallida] 2e-15; gi|1005477734|ref|XP_015775635.1|PREDICTED: uncharacterized protein LOC107353762 [Acropora digitifera] 3e-10; gi|919014285|ref|XP_013391603.1|PREDICTED: uncharacterized protein LOC106159750 [Lingula anatina] 4e-08; gi|291237442|ref|XP_002738644.1|PREDICTED: uncharacterized protein LOC100378881 [Saccoglossus kowalevskii] 4e-07; gi|780024818|ref|XP_011665814.1|PREDICTED: uncharacterized protein LOC576253 isoform X1 [Strongylocentrotus purpuratus] 3e-06; gi|390361253|ref|XP_799892.3|PREDICTED: uncharacterized protein LOC576253 isoform X2 [Strongylocentrotus purpuratus] 3e-06; gi|871225186|ref|XP_012936594.1|PREDICTED: uncharacterized protein LOC101855718 [Aplysia californica] 1e-05; gi|1126218643|ref|XP_019643427.1|PREDICTED: uncharacterized protein LOC109484548 isoform X2 [Branchiostoma belcheri] 1e-05;
NvERTx.4.210605 R-9 0.339221155928 E-7 0.99999999493 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184934 R-9 0.338774041051 E-6 0.999999967031 A0A1S3HT46_LINUN uncharacterized protein LOC106157950 {ECO:0000313|RefSeq:XP_013389212.1} gi|156375148|ref|XP_001629944.1|predicted protein [Nematostella vectensis], 1e-153
other nr_hits gi|156378641|ref|XP_001631250.1|predicted protein [Nematostella vectensis] 4e-97; gi|156379145|ref|XP_001631319.1|predicted protein [Nematostella vectensis] 2e-75; gi|156370995|ref|XP_001628552.1|predicted protein [Nematostella vectensis] 8e-59; gi|156364760|ref|XP_001626513.1|predicted protein [Nematostella vectensis] 8e-56; gi|1005454791|ref|XP_015764535.1|PREDICTED: uncharacterized protein LOC107343481 [Acropora digitifera] 8e-46; gi|919009397|ref|XP_013389212.1|PREDICTED: uncharacterized protein LOC106157950 [Lingula anatina] 1e-41; gi|1005488011|ref|XP_015780592.1|PREDICTED: uncharacterized protein LOC107358507 [Acropora digitifera] 4e-40; gi|1005480188|ref|XP_015776827.1|PREDICTED: uncharacterized protein LOC107354843 [Acropora digitifera] 5e-40; gi|919027113|ref|XP_013397356.1|PREDICTED: uncharacterized protein LOC106164102 [Lingula anatina] 2e-38;
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