#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

Search by gene name


Search by NvERTx ID





Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.6360 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.1177 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.39345 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.56772 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96029 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96031 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96017 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96018 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96019 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96020 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96026 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96021 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96022 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96023 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96025 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100429 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100430 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100431 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100433 R-9 0.766206722728 E-6 0.999819199912 P46434 Glutathione S-transferase 1 gi|156402305|ref|XP_001639531.1|predicted protein [Nematostella vectensis], 2e-72
other nr_hits gi|156395647|ref|XP_001637222.1|predicted protein [Nematostella vectensis] 2e-47; gi|156377051|ref|XP_001630671.1|predicted protein [Nematostella vectensis] 2e-37; gi|999979870|gb|KXJ19044.1|Glutathione S-transferase [Exaiptasia pallida] 1e-25; gi|999969738|gb|KXJ08912.1|Glutathione S-transferase [Exaiptasia pallida] 8e-24; gi|193878319|gb|ACF25904.1|GST3 [Azumapecten farreri] 3e-19; gi|397913867|gb|AFO69980.1|GST_pi-like protein [Strongylocentrotus droebachiensis] 5e-17; gi|762157355|ref|XP_011416828.1|PREDICTED: S-crystallin SL11 [Crassostrea gigas] 7e-17; gi|919068224|ref|XP_013415614.1|PREDICTED: hematopoietic prostaglandin D synthase-like [Lingula anatina] 2e-16; gi|871273337|ref|XP_005111883.2|PREDICTED: glutathione S-transferase 1-like [Aplysia californica] 3e-16;
NvERTx.4.100434 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100435 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100436 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100437 R-9 0.766206722728 E-6 0.999819199912 P46434 Glutathione S-transferase 1 gi|156402305|ref|XP_001639531.1|predicted protein [Nematostella vectensis], 2e-61
other nr_hits gi|156395647|ref|XP_001637222.1|predicted protein [Nematostella vectensis] 9e-38; gi|156377051|ref|XP_001630671.1|predicted protein [Nematostella vectensis] 5e-28; gi|999979870|gb|KXJ19044.1|Glutathione S-transferase [Exaiptasia pallida] 5e-20; gi|999969738|gb|KXJ08912.1|Glutathione S-transferase [Exaiptasia pallida] 3e-18; gi|193878319|gb|ACF25904.1|GST3 [Azumapecten farreri] 1e-14; gi|1005471380|ref|XP_015772560.1|PREDICTED: glutathione S-transferase 1-like [Acropora digitifera] 3e-14; gi|156396418|ref|XP_001637390.1|predicted protein [Nematostella vectensis] 3e-14; gi|397913867|gb|AFO69980.1|GST_pi-like protein [Strongylocentrotus droebachiensis] 3e-14; gi|762157355|ref|XP_011416828.1|PREDICTED: S-crystallin SL11 [Crassostrea gigas] 7e-14;
NvERTx.4.100438 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137683 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137663 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137664 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137667 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137678 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137679 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146865 R-9 0.766206722728 E-6 0.999819199912 NA NA None
other nr_hits NA
NvERTx.4.146866 R-9 0.766206722728 E-6 0.999819199912 NA NA None
other nr_hits NA
NvERTx.4.156881 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156867 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171844 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171846 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198460 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204137 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204138 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204140 R-9 0.766206722728 E-6 0.999819199912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204141 R-9 0.766206722728 E-6 0.999819199912 NA NA None
other nr_hits NA
NvERTx.4.191296 R-9 0.766174994842 E-1 0.999645688738 Q01974 Tyrosine-protein kinase transmembrane receptor ROR2 gi|999981323|gb|KXJ20497.1|Fibroblast growth factor receptor-like 1 [Exaiptasia pallida], 3e-129
other nr_hits gi|999966380|gb|KXJ05554.1|Tyrosine-protein kinase transmembrane receptor Ror2, partial [Exaiptasia pallida] 2e-114; gi|999978752|gb|KXJ17926.1|Fibroblast growth factor receptor, partial [Exaiptasia pallida] 1e-76; gi|999971995|gb|KXJ11169.1|putative apolipoprotein(a)-like protein 2 [Exaiptasia pallida] 4e-68; gi|999978770|gb|KXJ17944.1|Fibroblast growth factor receptor 1 [Exaiptasia pallida] 2e-56; gi|156343061|ref|XP_001621026.1|hypothetical protein NEMVEDRAFT_v1g8987 [Nematostella vectensis] 4e-44; gi|156380540|ref|XP_001631826.1|predicted protein [Nematostella vectensis] 3e-41; gi|1005425013|ref|XP_015778950.1|PREDICTED: uncharacterized protein LOC107356837 [Acropora digitifera] 1e-34; gi|999972677|gb|KXJ11851.1|Tyrosine-protein kinase transmembrane receptor ROR2 [Exaiptasia pallida] 1e-34; gi|1005424941|ref|XP_015778609.1|PREDICTED: neural cell adhesion molecule L1-like protein [Acropora digitifera] 6e-33;
NvERTx.4.191299 R-9 0.766174994842 E-1 0.999645688738 Q01974 Tyrosine-protein kinase transmembrane receptor ROR2 gi|156343061|ref|XP_001621026.1|hypothetical protein NEMVEDRAFT_v1g8987 [Nematostella vectensis], 9e-48
other nr_hits gi|156380540|ref|XP_001631826.1|predicted protein [Nematostella vectensis] 1e-46; gi|999981323|gb|KXJ20497.1|Fibroblast growth factor receptor-like 1 [Exaiptasia pallida] 3e-35; gi|999966380|gb|KXJ05554.1|Tyrosine-protein kinase transmembrane receptor Ror2, partial [Exaiptasia pallida] 4e-35; gi|999978752|gb|KXJ17926.1|Fibroblast growth factor receptor, partial [Exaiptasia pallida] 4e-33; gi|999971995|gb|KXJ11169.1|putative apolipoprotein(a)-like protein 2 [Exaiptasia pallida] 6e-33; gi|999972677|gb|KXJ11851.1|Tyrosine-protein kinase transmembrane receptor ROR2 [Exaiptasia pallida] 7e-27; gi|18150832|dbj|BAA81716.3|protein tyrosine kinase [Ephydatia fluviatilis] 4e-24; gi|1108471261|embl|CRL00182.1|CLUMA_CG013456, isoform A [Clunio marinus] 2e-23; gi|926610770|ref|XP_013790471.1|PREDICTED: tyrosine-protein kinase transmembrane receptor Ror2-like [Limulus polyphemus] 6e-23;
NvERTx.4.191290 R-9 0.766174994842 E-1 0.999645688738 Q01974 Tyrosine-protein kinase transmembrane receptor ROR2 gi|999966380|gb|KXJ05554.1|Tyrosine-protein kinase transmembrane receptor Ror2, partial [Exaiptasia pallida], 4e-100
other nr_hits gi|999981323|gb|KXJ20497.1|Fibroblast growth factor receptor-like 1 [Exaiptasia pallida] 5e-96; gi|999978752|gb|KXJ17926.1|Fibroblast growth factor receptor, partial [Exaiptasia pallida] 6e-77; gi|999971995|gb|KXJ11169.1|putative apolipoprotein(a)-like protein 2 [Exaiptasia pallida] 2e-68; gi|156343061|ref|XP_001621026.1|hypothetical protein NEMVEDRAFT_v1g8987 [Nematostella vectensis] 2e-44; gi|156380540|ref|XP_001631826.1|predicted protein [Nematostella vectensis] 1e-41; gi|1005425013|ref|XP_015778950.1|PREDICTED: uncharacterized protein LOC107356837 [Acropora digitifera] 5e-35; gi|999972677|gb|KXJ11851.1|Tyrosine-protein kinase transmembrane receptor ROR2 [Exaiptasia pallida] 5e-35; gi|999978770|gb|KXJ17944.1|Fibroblast growth factor receptor 1 [Exaiptasia pallida] 5e-34; gi|1005424941|ref|XP_015778609.1|PREDICTED: neural cell adhesion molecule L1-like protein [Acropora digitifera] 3e-33;
NvERTx.4.191291 R-9 0.766174994842 E-1 0.999645688738 Q01974 Tyrosine-protein kinase transmembrane receptor ROR2 gi|999966380|gb|KXJ05554.1|Tyrosine-protein kinase transmembrane receptor Ror2, partial [Exaiptasia pallida], 2e-115
other nr_hits gi|999981323|gb|KXJ20497.1|Fibroblast growth factor receptor-like 1 [Exaiptasia pallida] 6e-115; gi|999978752|gb|KXJ17926.1|Fibroblast growth factor receptor, partial [Exaiptasia pallida] 9e-77; gi|999971995|gb|KXJ11169.1|putative apolipoprotein(a)-like protein 2 [Exaiptasia pallida] 3e-68; gi|999978770|gb|KXJ17944.1|Fibroblast growth factor receptor 1 [Exaiptasia pallida] 1e-50; gi|156343061|ref|XP_001621026.1|hypothetical protein NEMVEDRAFT_v1g8987 [Nematostella vectensis] 3e-44; gi|156380540|ref|XP_001631826.1|predicted protein [Nematostella vectensis] 2e-41; gi|1005425013|ref|XP_015778950.1|PREDICTED: uncharacterized protein LOC107356837 [Acropora digitifera] 9e-35; gi|999972677|gb|KXJ11851.1|Tyrosine-protein kinase transmembrane receptor ROR2 [Exaiptasia pallida] 9e-35; gi|1005424941|ref|XP_015778609.1|PREDICTED: neural cell adhesion molecule L1-like protein [Acropora digitifera] 5e-33;
NvERTx.4.14601 R-9 0.764674455425 E-8 0.999997156803 Q17232 Octopamine receptor gi|156358615|ref|XP_001624612.1|predicted protein [Nematostella vectensis], 9e-104
other nr_hits gi|156364751|ref|XP_001626509.1|predicted protein [Nematostella vectensis] 1e-46; gi|156358617|ref|XP_001624613.1|predicted protein [Nematostella vectensis] 8e-41; gi|156358619|ref|XP_001624614.1|predicted protein [Nematostella vectensis] 1e-35; gi|156370378|ref|XP_001628447.1|predicted protein [Nematostella vectensis] 1e-35; gi|999976962|gb|KXJ16136.1|D(5)-like dopamine receptor [Exaiptasia pallida] 2e-32; gi|668463740|gb|KFB51134.1|AGAP002519-PA-like protein [Anopheles sinensis] 6e-28; gi|118782662|ref|XP_312420.3|AGAP002519-PA [Anopheles gambiae str. PEST] 1e-26; gi|170054904|ref|XP_001863342.1|tyramine/octopamine receptor [Culex quinquefasciatus] 2e-26; gi|985402283|ref|XP_015368899.1|PREDICTED: octopamine receptor-like isoform X1 [Diuraphis noxia] 3e-26;
NvERTx.4.217042 R-9 0.764674455425 E-8 0.999997156803 P28647 Adenosine receptor A3 gi|156358615|ref|XP_001624612.1|predicted protein [Nematostella vectensis], 5e-28
other nr_hits gi|156358617|ref|XP_001624613.1|predicted protein [Nematostella vectensis] 5e-13; gi|156364751|ref|XP_001626509.1|predicted protein [Nematostella vectensis] 7e-11; gi|156358619|ref|XP_001624614.1|predicted protein [Nematostella vectensis] 2e-07; gi|156370378|ref|XP_001628447.1|predicted protein [Nematostella vectensis] 2e-07; gi|1028724240|ref|XP_016664061.1|PREDICTED: octopamine receptor-like isoform X1 [Acyrthosiphon pisum] 8e-07; gi|641678593|ref|XP_008188216.1|PREDICTED: octopamine receptor-like isoform X2 [Acyrthosiphon pisum] 8e-07; gi|641678595|ref|XP_008188217.1|PREDICTED: octopamine receptor-like isoform X3 [Acyrthosiphon pisum] 8e-07; gi|1005460457|ref|XP_015767311.1|PREDICTED: histamine H2 receptor-like [Acropora digitifera] 1e-06; gi|985402283|ref|XP_015368899.1|PREDICTED: octopamine receptor-like isoform X1 [Diuraphis noxia] 1e-06;
NvERTx.4.78276 R-9 0.763767332264 E-3 0.996411957097 Q58D79 Rab effector Noc2 gi|156386596|ref|XP_001633998.1|predicted protein [Nematostella vectensis], 1e-90
other nr_hits gi|1005472873|ref|XP_015773295.1|PREDICTED: rabphilin-3A-like isoform X2 [Acropora digitifera] 1e-63; gi|999977830|gb|KXJ17004.1|Double C2-like domain-containing protein beta [Exaiptasia pallida] 1e-63; gi|1005472871|ref|XP_015773293.1|PREDICTED: rabphilin-3A-like isoform X1 [Acropora digitifera] 1e-53; gi|780161317|ref|XP_011683137.1|PREDICTED: double C2-like domain-containing protein beta isoform X1 [Strongylocentrotus purpuratus] 2e-46; gi|585666486|ref|XP_006817123.1|PREDICTED: LOW QUALITY PROTEIN: rabphilin-3A-like [Saccoglossus kowalevskii] 6e-46; gi|676447217|ref|XP_009051335.1|hypothetical protein LOTGIDRAFT_63751, partial [Lottia gigantea] 2e-45; gi|961112941|ref|XP_014779575.1|PREDICTED: rabphilin-3A-like [Octopus bimaculoides] 3e-45; gi|156386594|ref|XP_001633997.1|predicted protein [Nematostella vectensis] 9e-45; gi|443691870|gb|ELT93620.1|Rabphilin [Capitella teleta] 1e-44;
NvERTx.4.78277 R-9 0.763767332264 E-3 0.996411957097 Q58D79 Rab effector Noc2 gi|999977830|gb|KXJ17004.1|Double C2-like domain-containing protein beta [Exaiptasia pallida], 1e-102
other nr_hits gi|1005472873|ref|XP_015773295.1|PREDICTED: rabphilin-3A-like isoform X2 [Acropora digitifera] 2e-94; gi|156386596|ref|XP_001633998.1|predicted protein [Nematostella vectensis] 4e-90; gi|1005472871|ref|XP_015773293.1|PREDICTED: rabphilin-3A-like isoform X1 [Acropora digitifera] 2e-84; gi|762084699|ref|XP_011424848.1|PREDICTED: double C2-like domain-containing protein beta isoform X3 [Crassostrea gigas] 3e-63; gi|1139750881|ref|XP_019922034.1|PREDICTED: double C2-like domain-containing protein beta isoform X4 [Crassostrea gigas] 6e-63; gi|762084691|ref|XP_011424844.1|PREDICTED: double C2-like domain-containing protein beta isoform X1 [Crassostrea gigas] 1e-61; gi|762084697|ref|XP_011424847.1|PREDICTED: double C2-like domain-containing protein beta isoform X2 [Crassostrea gigas] 2e-61; gi|961112941|ref|XP_014779575.1|PREDICTED: rabphilin-3A-like [Octopus bimaculoides] 7e-61; gi|585666486|ref|XP_006817123.1|PREDICTED: LOW QUALITY PROTEIN: rabphilin-3A-like [Saccoglossus kowalevskii] 2e-59;
NvERTx.4.78278 R-9 0.763767332264 E-3 0.996411957097 Q58D79 Rab effector Noc2 gi|999977830|gb|KXJ17004.1|Double C2-like domain-containing protein beta [Exaiptasia pallida], 2e-109
other nr_hits gi|1005472873|ref|XP_015773295.1|PREDICTED: rabphilin-3A-like isoform X2 [Acropora digitifera] 6e-102; gi|1005472871|ref|XP_015773293.1|PREDICTED: rabphilin-3A-like isoform X1 [Acropora digitifera] 6e-92; gi|156386596|ref|XP_001633998.1|predicted protein [Nematostella vectensis] 4e-90; gi|762084699|ref|XP_011424848.1|PREDICTED: double C2-like domain-containing protein beta isoform X3 [Crassostrea gigas] 3e-68; gi|1139750881|ref|XP_019922034.1|PREDICTED: double C2-like domain-containing protein beta isoform X4 [Crassostrea gigas] 8e-68; gi|762084691|ref|XP_011424844.1|PREDICTED: double C2-like domain-containing protein beta isoform X1 [Crassostrea gigas] 1e-66; gi|762084697|ref|XP_011424847.1|PREDICTED: double C2-like domain-containing protein beta isoform X2 [Crassostrea gigas] 3e-66; gi|961112941|ref|XP_014779575.1|PREDICTED: rabphilin-3A-like [Octopus bimaculoides] 2e-65; gi|926632528|ref|XP_013782034.1|PREDICTED: rabphilin-3A-like [Limulus polyphemus] 5e-64;
More