#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.105818 R-9 0.783386107041 E-3 0.999999995232 Q5PQT2 Myotubularin-related protein 3 gi|156380856|ref|XP_001631983.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999988880|gb|KXJ27948.1|Myotubularin-related protein 3 [Exaiptasia pallida] 1e-294; gi|1005473401|ref|XP_015773531.1|PREDICTED: myotubularin-related protein 3-like [Acropora digitifera] 1e-264; gi|1126159149|ref|XP_019618324.1|PREDICTED: myotubularin-related protein 3-like [Branchiostoma belcheri] 2e-175; gi|260803685|ref|XP_002596720.1|hypothetical protein BRAFLDRAFT_219160 [Branchiostoma floridae] 2e-174; gi|672076765|ref|XP_008768524.1|PREDICTED: myotubularin-related protein 3 isoform X2 [Rattus norvegicus] 7e-170; gi|672076769|ref|XP_008768526.1|PREDICTED: myotubularin-related protein 3 isoform X4 [Rattus norvegicus] 7e-170; gi|564384468|ref|XP_006251364.1|PREDICTED: myotubularin-related protein 3 isoform X1 [Rattus norvegicus] 7e-170; gi|672076771|ref|XP_008768527.1|PREDICTED: myotubularin-related protein 3 isoform X5 [Rattus norvegicus] 7e-170; gi|672076767|ref|XP_008768525.1|PREDICTED: myotubularin-related protein 3 isoform X3 [Rattus norvegicus] 7e-170;
NvERTx.4.105819 R-9 0.783386107041 E-3 0.999999995232 Q5PQT2 Myotubularin-related protein 3 gi|156380856|ref|XP_001631983.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999988880|gb|KXJ27948.1|Myotubularin-related protein 3 [Exaiptasia pallida] 7e-238; gi|1005473401|ref|XP_015773531.1|PREDICTED: myotubularin-related protein 3-like [Acropora digitifera] 2e-215; gi|1126159149|ref|XP_019618324.1|PREDICTED: myotubularin-related protein 3-like [Branchiostoma belcheri] 2e-175; gi|260803685|ref|XP_002596720.1|hypothetical protein BRAFLDRAFT_219160 [Branchiostoma floridae] 1e-174; gi|672076765|ref|XP_008768524.1|PREDICTED: myotubularin-related protein 3 isoform X2 [Rattus norvegicus] 6e-170; gi|672076769|ref|XP_008768526.1|PREDICTED: myotubularin-related protein 3 isoform X4 [Rattus norvegicus] 6e-170; gi|564384468|ref|XP_006251364.1|PREDICTED: myotubularin-related protein 3 isoform X1 [Rattus norvegicus] 6e-170; gi|672076771|ref|XP_008768527.1|PREDICTED: myotubularin-related protein 3 isoform X5 [Rattus norvegicus] 6e-170; gi|672076767|ref|XP_008768525.1|PREDICTED: myotubularin-related protein 3 isoform X3 [Rattus norvegicus] 6e-170;
NvERTx.4.105820 R-9 0.783386107041 E-3 0.999999995232 Q13615 Myotubularin-related protein 3 gi|999988880|gb|KXJ27948.1|Myotubularin-related protein 3 [Exaiptasia pallida], 3e-69
other nr_hits gi|1005473401|ref|XP_015773531.1|PREDICTED: myotubularin-related protein 3-like [Acropora digitifera] 6e-60; gi|1126159149|ref|XP_019618324.1|PREDICTED: myotubularin-related protein 3-like [Branchiostoma belcheri] 1e-37; gi|585709369|ref|XP_006824335.1|PREDICTED: LOW QUALITY PROTEIN: myotubularin-related protein 4-like, partial [Saccoglossus kowalevskii] 1e-36; gi|1072252134|ref|XP_018411010.1|PREDICTED: myotubularin-related protein 3 isoform X1 [Nanorana parkeri] 3e-35; gi|260803685|ref|XP_002596720.1|hypothetical protein BRAFLDRAFT_219160 [Branchiostoma floridae] 3e-35; gi|1035282701|ref|XP_016898542.1|PREDICTED: myotubularin-related protein 3-like isoform X3 [Cynoglossus semilaevis] 4e-35; gi|821467830|ref|XP_012398050.1|PREDICTED: myotubularin-related protein 3 isoform X3 [Sarcophilus harrisii] 5e-35; gi|821467826|ref|XP_012398048.1|PREDICTED: myotubularin-related protein 3 isoform X1 [Sarcophilus harrisii] 5e-35; gi|821467828|ref|XP_012398049.1|PREDICTED: myotubularin-related protein 3 isoform X2 [Sarcophilus harrisii] 5e-35;
NvERTx.4.105821 R-9 0.783386107041 E-3 0.999999995232 Q5PQT2 Myotubularin-related protein 3 gi|156380856|ref|XP_001631983.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999988880|gb|KXJ27948.1|Myotubularin-related protein 3 [Exaiptasia pallida] 1e-294; gi|1005473401|ref|XP_015773531.1|PREDICTED: myotubularin-related protein 3-like [Acropora digitifera] 1e-264; gi|1126159149|ref|XP_019618324.1|PREDICTED: myotubularin-related protein 3-like [Branchiostoma belcheri] 2e-175; gi|260803685|ref|XP_002596720.1|hypothetical protein BRAFLDRAFT_219160 [Branchiostoma floridae] 2e-174; gi|672076765|ref|XP_008768524.1|PREDICTED: myotubularin-related protein 3 isoform X2 [Rattus norvegicus] 7e-170; gi|672076769|ref|XP_008768526.1|PREDICTED: myotubularin-related protein 3 isoform X4 [Rattus norvegicus] 7e-170; gi|564384468|ref|XP_006251364.1|PREDICTED: myotubularin-related protein 3 isoform X1 [Rattus norvegicus] 7e-170; gi|672076771|ref|XP_008768527.1|PREDICTED: myotubularin-related protein 3 isoform X5 [Rattus norvegicus] 7e-170; gi|672076767|ref|XP_008768525.1|PREDICTED: myotubularin-related protein 3 isoform X3 [Rattus norvegicus] 7e-170;
NvERTx.4.105822 R-9 0.783386107041 E-3 0.999999995232 Q5PQT2 Myotubularin-related protein 3 gi|156380856|ref|XP_001631983.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999988880|gb|KXJ27948.1|Myotubularin-related protein 3 [Exaiptasia pallida] 7e-238; gi|1005473401|ref|XP_015773531.1|PREDICTED: myotubularin-related protein 3-like [Acropora digitifera] 2e-215; gi|1126159149|ref|XP_019618324.1|PREDICTED: myotubularin-related protein 3-like [Branchiostoma belcheri] 2e-175; gi|260803685|ref|XP_002596720.1|hypothetical protein BRAFLDRAFT_219160 [Branchiostoma floridae] 1e-174; gi|672076765|ref|XP_008768524.1|PREDICTED: myotubularin-related protein 3 isoform X2 [Rattus norvegicus] 6e-170; gi|672076769|ref|XP_008768526.1|PREDICTED: myotubularin-related protein 3 isoform X4 [Rattus norvegicus] 6e-170; gi|564384468|ref|XP_006251364.1|PREDICTED: myotubularin-related protein 3 isoform X1 [Rattus norvegicus] 6e-170; gi|672076771|ref|XP_008768527.1|PREDICTED: myotubularin-related protein 3 isoform X5 [Rattus norvegicus] 6e-170; gi|672076767|ref|XP_008768525.1|PREDICTED: myotubularin-related protein 3 isoform X3 [Rattus norvegicus] 6e-170;
NvERTx.4.225341 R-9 0.783386107041 E-3 0.999999995232 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.6164 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.11624 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.17267 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.25566 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.30564 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.75186 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82804 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.89482 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98405 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description gi|156395404|ref|XP_001637101.1|predicted protein [Nematostella vectensis], 3e-20
other nr_hits NA
NvERTx.4.99574 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147297 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156412 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156421 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description gi|999968313|gb|KXJ07487.1|Tetratricopeptide repeat protein 28, partial [Exaiptasia pallida], 1e-48
other nr_hits gi|999968969|gb|KXJ08143.1|hypothetical protein AC249_AIPGENE25337, partial [Exaiptasia pallida] 1e-48; gi|156401203|ref|XP_001639181.1|predicted protein [Nematostella vectensis] 2e-47; gi|156401205|ref|XP_001639182.1|predicted protein [Nematostella vectensis] 1e-10; gi|1005466544|ref|XP_015770250.1|PREDICTED: uncharacterized protein LOC107348705 [Acropora digitifera] 8e-09; gi|780120558|ref|XP_011677857.1|PREDICTED: uncharacterized protein LOC763063 [Strongylocentrotus purpuratus] 4e-06;
NvERTx.4.156431 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description gi|999968313|gb|KXJ07487.1|Tetratricopeptide repeat protein 28, partial [Exaiptasia pallida], 4e-49
other nr_hits gi|999968969|gb|KXJ08143.1|hypothetical protein AC249_AIPGENE25337, partial [Exaiptasia pallida] 4e-49; gi|156401203|ref|XP_001639181.1|predicted protein [Nematostella vectensis] 5e-48; gi|1005466544|ref|XP_015770250.1|PREDICTED: uncharacterized protein LOC107348705 [Acropora digitifera] 3e-09; gi|780120558|ref|XP_011677857.1|PREDICTED: uncharacterized protein LOC763063 [Strongylocentrotus purpuratus] 1e-06;
NvERTx.4.156424 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description gi|999968313|gb|KXJ07487.1|Tetratricopeptide repeat protein 28, partial [Exaiptasia pallida], 8e-38
other nr_hits gi|999968969|gb|KXJ08143.1|hypothetical protein AC249_AIPGENE25337, partial [Exaiptasia pallida] 8e-38; gi|156401203|ref|XP_001639181.1|predicted protein [Nematostella vectensis] 1e-29; gi|156401205|ref|XP_001639182.1|predicted protein [Nematostella vectensis] 6e-11;
NvERTx.4.156427 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description gi|156401203|ref|XP_001639181.1|predicted protein [Nematostella vectensis], 3e-66
other nr_hits gi|999968969|gb|KXJ08143.1|hypothetical protein AC249_AIPGENE25337, partial [Exaiptasia pallida] 3e-32; gi|1005466544|ref|XP_015770250.1|PREDICTED: uncharacterized protein LOC107348705 [Acropora digitifera] 9e-24; gi|999968313|gb|KXJ07487.1|Tetratricopeptide repeat protein 28, partial [Exaiptasia pallida] 2e-19;
NvERTx.4.156429 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description gi|999968313|gb|KXJ07487.1|Tetratricopeptide repeat protein 28, partial [Exaiptasia pallida], 4e-38
other nr_hits gi|999968969|gb|KXJ08143.1|hypothetical protein AC249_AIPGENE25337, partial [Exaiptasia pallida] 4e-38; gi|156401203|ref|XP_001639181.1|predicted protein [Nematostella vectensis] 6e-30;
NvERTx.4.156426 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166693 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166698 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171400 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.207461 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.216635 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.219870 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.221212 R-9 0.782977070907 E-7 0.999742748656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71077 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description gi|156405810|ref|XP_001640924.1|predicted protein [Nematostella vectensis], 3e-117
other nr_hits gi|999976108|gb|KXJ15282.1|hypothetical protein AC249_AIPGENE14692 [Exaiptasia pallida] 2e-44;
NvERTx.4.71078 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71079 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71082 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description gi|156405810|ref|XP_001640924.1|predicted protein [Nematostella vectensis], 3e-41
other nr_hits gi|999976108|gb|KXJ15282.1|hypothetical protein AC249_AIPGENE14692 [Exaiptasia pallida] 5e-13;
NvERTx.4.85394 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112328 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112330 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130351 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130357 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131330 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139803 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198935 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.70238 R-9 0.781563963894 E-8 0.99999762275 P30975 Tachykinin-like peptides receptor 99D gi|156398393|ref|XP_001638173.1|predicted protein [Nematostella vectensis], 1e-146
other nr_hits gi|156370363|ref|XP_001628440.1|predicted protein [Nematostella vectensis] 8e-75; gi|999981192|gb|KXJ20366.1|Neuropeptide FF receptor 2 [Exaiptasia pallida] 6e-70; gi|1005428687|ref|XP_015752070.1|PREDICTED: prolactin-releasing peptide receptor-like [Acropora digitifera] 4e-65; gi|1005428649|ref|XP_015752050.1|PREDICTED: allatostatin-A receptor-like [Acropora digitifera] 5e-63; gi|156380953|ref|XP_001632031.1|predicted protein [Nematostella vectensis] 7e-52; gi|1005467661|ref|XP_015770743.1|PREDICTED: substance-K receptor-like [Acropora digitifera] 8e-38; gi|751456508|ref|XP_011182823.1|PREDICTED: substance-P receptor [Bactrocera cucurbitae] 3e-35; gi|929350726|ref|XP_014102978.1|PREDICTED: prolactin-releasing peptide receptor-like [Bactrocera oleae] 4e-35; gi|1098614880|ref|XP_018786122.1|PREDICTED: neuropeptide Y receptor type 1 [Bactrocera latifrons] 8e-35;
NvERTx.4.70239 R-9 0.781563963894 E-8 0.99999762275 P30975 Tachykinin-like peptides receptor 99D gi|156398393|ref|XP_001638173.1|predicted protein [Nematostella vectensis], 1e-146
other nr_hits gi|156370363|ref|XP_001628440.1|predicted protein [Nematostella vectensis] 8e-75; gi|999981192|gb|KXJ20366.1|Neuropeptide FF receptor 2 [Exaiptasia pallida] 6e-70; gi|1005428687|ref|XP_015752070.1|PREDICTED: prolactin-releasing peptide receptor-like [Acropora digitifera] 4e-65; gi|1005428649|ref|XP_015752050.1|PREDICTED: allatostatin-A receptor-like [Acropora digitifera] 5e-63; gi|156380953|ref|XP_001632031.1|predicted protein [Nematostella vectensis] 7e-52; gi|1005467661|ref|XP_015770743.1|PREDICTED: substance-K receptor-like [Acropora digitifera] 8e-38; gi|751456508|ref|XP_011182823.1|PREDICTED: substance-P receptor [Bactrocera cucurbitae] 3e-35; gi|929350726|ref|XP_014102978.1|PREDICTED: prolactin-releasing peptide receptor-like [Bactrocera oleae] 4e-35; gi|1098614880|ref|XP_018786122.1|PREDICTED: neuropeptide Y receptor type 1 [Bactrocera latifrons] 8e-35;
NvERTx.4.207492 R-9 0.781563963894 E-8 0.99999762275 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.229386 R-9 0.781563963894 E-8 0.99999762275 No_Uniprotmatch No_Description gi|156398393|ref|XP_001638173.1|predicted protein [Nematostella vectensis], 9e-10
other nr_hits NA
NvERTx.4.76786 R-9 0.780946087066 E-1 0.999999646417 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76787 R-9 0.780946087066 E-1 0.999999646417 No_Uniprotmatch No_Description gi|156391974|ref|XP_001635824.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999989185|gb|KXJ28227.1|hypothetical protein AC249_AIPGENE5929 [Exaiptasia pallida] 4e-139; gi|156392020|ref|XP_001635847.1|predicted protein [Nematostella vectensis] 3e-138; gi|156392164|ref|XP_001635919.1|predicted protein [Nematostella vectensis] 5e-132; gi|999989252|gb|KXJ28294.1|hypothetical protein AC249_AIPGENE5778 [Exaiptasia pallida] 2e-129; gi|156371720|ref|XP_001628910.1|predicted protein [Nematostella vectensis] 6e-95; gi|828203110|ref|XP_012555824.1|PREDICTED: uncharacterized protein LOC105844134 [Hydra vulgaris] 1e-94; gi|999974663|gb|KXJ13837.1|hypothetical protein AC249_AIPGENE4937 [Exaiptasia pallida] 3e-85; gi|999975976|gb|KXJ15150.1|hypothetical protein AC249_AIPGENE11293 [Exaiptasia pallida] 6e-84; gi|999989547|gb|KXJ28583.1|hypothetical protein AC249_AIPGENE17323 [Exaiptasia pallida] 6e-84;
NvERTx.4.76788 R-9 0.780946087066 E-1 0.999999646417 No_Uniprotmatch No_Description gi|156391974|ref|XP_001635824.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999989185|gb|KXJ28227.1|hypothetical protein AC249_AIPGENE5929 [Exaiptasia pallida] 2e-139; gi|156392020|ref|XP_001635847.1|predicted protein [Nematostella vectensis] 3e-138; gi|156392164|ref|XP_001635919.1|predicted protein [Nematostella vectensis] 2e-133; gi|999989252|gb|KXJ28294.1|hypothetical protein AC249_AIPGENE5778 [Exaiptasia pallida] 2e-129; gi|156371720|ref|XP_001628910.1|predicted protein [Nematostella vectensis] 7e-95; gi|828203110|ref|XP_012555824.1|PREDICTED: uncharacterized protein LOC105844134 [Hydra vulgaris] 1e-94; gi|999974663|gb|KXJ13837.1|hypothetical protein AC249_AIPGENE4937 [Exaiptasia pallida] 3e-85; gi|999975976|gb|KXJ15150.1|hypothetical protein AC249_AIPGENE11293 [Exaiptasia pallida] 7e-84; gi|999989547|gb|KXJ28583.1|hypothetical protein AC249_AIPGENE17323 [Exaiptasia pallida] 7e-84;
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