#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.115468 R-9 0.909660177338 E-3 0.999420228851 O64943 Polcalcin Jun o 2 gi|156380477|ref|XP_001631795.1|predicted protein [Nematostella vectensis], 3e-277
other nr_hits gi|999986946|gb|KXJ26073.1|hypothetical protein AC249_AIPGENE6418 [Exaiptasia pallida] 1e-44; gi|1126199543|ref|XP_019633043.1|PREDICTED: uncharacterized protein LOC109476512 isoform X1 [Branchiostoma belcheri] 5e-31; gi|1126199545|ref|XP_019633044.1|PREDICTED: titin-like isoform X2 [Branchiostoma belcheri] 5e-31; gi|1005435745|ref|XP_015755384.1|PREDICTED: uncharacterized protein LOC107334930 [Acropora digitifera] 4e-25; gi|780009234|ref|XP_011663539.1|PREDICTED: uncharacterized protein LOC100889159 isoform X1 [Strongylocentrotus purpuratus] 1e-24; gi|780009241|ref|XP_011663540.1|PREDICTED: uncharacterized protein LOC100889159 isoform X2 [Strongylocentrotus purpuratus] 1e-24; gi|919071417|ref|XP_013417078.1|PREDICTED: uncharacterized protein LOC106178443 isoform X1 [Lingula anatina] 4e-24; gi|919071421|ref|XP_013417079.1|PREDICTED: uncharacterized protein LOC106178443 isoform X2 [Lingula anatina] 4e-24; gi|919071424|ref|XP_013417080.1|PREDICTED: serine/arginine repetitive matrix protein 1-like isoform X3 [Lingula anatina] 4e-24;
NvERTx.4.117948 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140466 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140468 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149019 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149022 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149024 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149025 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154282 R-9 0.909660177338 E-3 0.999420228851 Q9UKK3 Poly [ADP-ribose] polymerase 4 gi|999984618|gb|KXJ23759.1|Poly [ADP-ribose], 9e-11
other nr_hits gi|1147367023|ref|XP_020032678.1|poly [ADP-ribose] 3e-05; gi|1126206746|ref|XP_019636962.1|PREDICTED: poly [ADP-ribose] 4e-05; gi|836703898|ref|XP_012787270.1|PREDICTED: poly [ADP-ribose] 4e-05; gi|512823476|ref|XP_004912129.1|PREDICTED: poly [ADP-ribose] 4e-05;
NvERTx.4.154536 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170277 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.210304 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.4770 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description gi|156380477|ref|XP_001631795.1|predicted protein [Nematostella vectensis], 3e-34
other nr_hits NA
NvERTx.4.217817 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.221021 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.221753 R-9 0.909660177338 E-3 0.999420228851 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.40394 R-9 0.909197584473 E-1 0.956094505036 No_Uniprotmatch No_Description gi|156388296|ref|XP_001634637.1|predicted protein [Nematostella vectensis], 1e-66
other nr_hits gi|1005486835|ref|XP_015780011.1|PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Acropora digitifera] 3e-45;
NvERTx.4.40395 R-9 0.909197584473 E-1 0.956094505036 No_Uniprotmatch No_Description gi|156388296|ref|XP_001634637.1|predicted protein [Nematostella vectensis], 5e-69
other nr_hits gi|1005486835|ref|XP_015780011.1|PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Acropora digitifera] 5e-47;
NvERTx.4.40396 R-9 0.909197584473 E-1 0.956094505036 No_Uniprotmatch No_Description gi|156388296|ref|XP_001634637.1|predicted protein [Nematostella vectensis], 6e-71
other nr_hits gi|1005486835|ref|XP_015780011.1|PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Acropora digitifera] 3e-46;
NvERTx.4.85577 R-9 0.909197584473 E-1 0.956094505036 Q00808 Vegetative incompatibility protein HET-E-1 gi|156388296|ref|XP_001634637.1|predicted protein [Nematostella vectensis], 1e-255
other nr_hits gi|1005486835|ref|XP_015780011.1|PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Acropora digitifera] 4e-180; gi|999973415|gb|KXJ12589.1|hypothetical protein AC249_AIPGENE14 [Exaiptasia pallida] 5e-115; gi|1005428070|ref|XP_015751750.1|PREDICTED: WD repeat and SOCS box-containing protein 1-like [Acropora digitifera] 3e-45; gi|999983127|gb|KXJ22270.1|WD repeat and SOCS box-containing protein 1 [Exaiptasia pallida] 4e-41; gi|156405196|ref|XP_001640618.1|predicted protein [Nematostella vectensis] 5e-39; gi|156389697|ref|XP_001635127.1|predicted protein [Nematostella vectensis] 4e-35; gi|1005479647|ref|XP_015776554.1|PREDICTED: WD repeat and SOCS box-containing protein 2-like [Acropora digitifera] 7e-34; gi|999968233|gb|KXJ07407.1|hypothetical protein AC249_AIPGENE13518 [Exaiptasia pallida] 6e-24; gi|999971792|gb|KXJ10966.1|WD repeat and SOCS box-containing protein 1 [Exaiptasia pallida] 1e-22;
NvERTx.4.85578 R-9 0.909197584473 E-1 0.956094505036 Q00808 Vegetative incompatibility protein HET-E-1 gi|156388296|ref|XP_001634637.1|predicted protein [Nematostella vectensis], 1e-255
other nr_hits gi|1005486835|ref|XP_015780011.1|PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Acropora digitifera] 4e-180; gi|999973415|gb|KXJ12589.1|hypothetical protein AC249_AIPGENE14 [Exaiptasia pallida] 5e-115; gi|1005428070|ref|XP_015751750.1|PREDICTED: WD repeat and SOCS box-containing protein 1-like [Acropora digitifera] 3e-45; gi|999983127|gb|KXJ22270.1|WD repeat and SOCS box-containing protein 1 [Exaiptasia pallida] 4e-41; gi|156405196|ref|XP_001640618.1|predicted protein [Nematostella vectensis] 5e-39; gi|156389697|ref|XP_001635127.1|predicted protein [Nematostella vectensis] 4e-35; gi|1005479647|ref|XP_015776554.1|PREDICTED: WD repeat and SOCS box-containing protein 2-like [Acropora digitifera] 7e-34; gi|999968233|gb|KXJ07407.1|hypothetical protein AC249_AIPGENE13518 [Exaiptasia pallida] 6e-24; gi|999971792|gb|KXJ10966.1|WD repeat and SOCS box-containing protein 1 [Exaiptasia pallida] 1e-22;
NvERTx.4.93227 R-9 0.908578837965 E-8 0.999958374028 No_Uniprotmatch No_Description gi|156382438|ref|XP_001632560.1|predicted protein [Nematostella vectensis], 5e-32
other nr_hits NA
NvERTx.4.93228 R-9 0.908578837965 E-8 0.999958374028 No_Uniprotmatch No_Description gi|156382438|ref|XP_001632560.1|predicted protein [Nematostella vectensis], 2e-38
other nr_hits NA
NvERTx.4.93229 R-9 0.908578837965 E-8 0.999958374028 No_Uniprotmatch No_Description gi|156382438|ref|XP_001632560.1|predicted protein [Nematostella vectensis], 8e-30
other nr_hits NA
NvERTx.4.93230 R-9 0.908578837965 E-8 0.999958374028 No_Uniprotmatch No_Description gi|156382438|ref|XP_001632560.1|predicted protein [Nematostella vectensis], 4e-27
other nr_hits NA
NvERTx.4.93231 R-9 0.908578837965 E-8 0.999958374028 No_Uniprotmatch No_Description gi|156382438|ref|XP_001632560.1|predicted protein [Nematostella vectensis], 2e-35
other nr_hits NA
NvERTx.4.93232 R-9 0.908578837965 E-8 0.999958374028 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.93233 R-9 0.908578837965 E-8 0.999958374028 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.93235 R-9 0.908578837965 E-8 0.999958374028 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.18040 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98905 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98906 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98909 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98911 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98912 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description gi|156365614|ref|XP_001626739.1|predicted protein [Nematostella vectensis], 3e-05
other nr_hits NA
NvERTx.4.98915 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153562 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153571 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153572 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153573 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153574 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153576 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153563 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153565 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153567 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153568 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153569 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153570 R-9 0.907864290605 E-3 0.999809438099 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160561 R-9 0.907864290605 E-3 0.999809438099 Q9QW30 Neurogenic locus notch homolog protein 2 gi|156365614|ref|XP_001626739.1|predicted protein [Nematostella vectensis], 2e-214
other nr_hits gi|156337098|ref|XP_001619797.1|hypothetical protein NEMVEDRAFT_v1g150279 [Nematostella vectensis] 9e-150; gi|156347512|ref|XP_001621656.1|hypothetical protein NEMVEDRAFT_v1g1059 [Nematostella vectensis] 2e-149; gi|156365616|ref|XP_001626740.1|predicted protein [Nematostella vectensis] 3e-87; gi|999969620|gb|KXJ08794.1|Fibropellin-1 [Exaiptasia pallida] 3e-82; gi|1139743902|ref|XP_019926894.1|PREDICTED: fibropellin-1-like [Crassostrea gigas] 4e-78; gi|156369997|ref|XP_001628259.1|predicted protein [Nematostella vectensis] 2e-74; gi|585677763|ref|XP_006819199.1|PREDICTED: neurogenic locus Notch protein-like [Saccoglossus kowalevskii] 4e-74; gi|780126720|ref|XP_011678703.1|PREDICTED: fibropellin-1, partial [Strongylocentrotus purpuratus] 3e-73; gi|260815375|ref|XP_002602449.1|hypothetical protein BRAFLDRAFT_63459 [Branchiostoma floridae] 4e-73;
NvERTx.4.160562 R-9 0.907864290605 E-3 0.999809438099 P10040 Protein crumbs gi|156365614|ref|XP_001626739.1|predicted protein [Nematostella vectensis], 3e-143
other nr_hits gi|156347512|ref|XP_001621656.1|hypothetical protein NEMVEDRAFT_v1g1059 [Nematostella vectensis] 1e-104; gi|156337098|ref|XP_001619797.1|hypothetical protein NEMVEDRAFT_v1g150279 [Nematostella vectensis] 2e-100; gi|999984460|gb|KXJ23601.1|Neurogenic locus notch-like protein 2 [Exaiptasia pallida] 3e-84; gi|1005495006|ref|XP_015750120.1|PREDICTED: neurogenic locus notch homolog protein 1-like, partial [Acropora digitifera] 1e-82; gi|999969620|gb|KXJ08794.1|Fibropellin-1 [Exaiptasia pallida] 5e-80; gi|156365616|ref|XP_001626740.1|predicted protein [Nematostella vectensis] 8e-73; gi|260828587|ref|XP_002609244.1|hypothetical protein BRAFLDRAFT_86846 [Branchiostoma floridae] 1e-63; gi|880870396|gb|JAI38830.1|Protein crumbs, partial [Bactrocera latifrons] 5e-61; gi|880888500|gb|JAI43997.1|Protein crumbs, partial [Bactrocera latifrons] 5e-61;
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