#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.56242 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.62559 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.62560 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.77598 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80679 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.83406 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101159 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.107918 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.108045 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.108053 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.108994 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.108996 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113896 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113899 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113900 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113901 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113902 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113903 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113904 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113906 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113910 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113913 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113916 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113917 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113918 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139741 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139749 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139750 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139751 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139752 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139753 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139756 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139893 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139894 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145473 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149201 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149204 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149205 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168130 R-8 0.996150062168 E-1 0.853148023231 Q9D8B3 Charged multivesicular body protein 4b gi|156401531|ref|XP_001639344.1|predicted protein [Nematostella vectensis], 5e-56
other nr_hits gi|999974407|gb|KXJ13581.1|Charged multivesicular body protein 4b [Exaiptasia pallida] 5e-43; gi|733917063|ref|XP_010720591.1|PREDICTED: charged multivesicular body protein 4b [Meleagris gallopavo] 3e-36; gi|543723233|ref|XP_005502786.1|PREDICTED: charged multivesicular body protein 4b [Columba livia] 3e-36; gi|449283979|gb|EMC90562.1|Charged multivesicular body protein 4b, partial [Columba livia] 3e-36; gi|701416693|ref|XP_009972479.1|PREDICTED: putative charged multivesicular body protein 4B-like protein CHMP4BP1 [Tyto alba] 6e-36; gi|699697444|ref|XP_009890417.1|PREDICTED: charged multivesicular body protein 4b [Charadrius vociferus] 6e-36; gi|690430320|ref|XP_009316957.1|PREDICTED: charged multivesicular body protein 4b [Pygoscelis adeliae] 6e-36; gi|449486145|ref|XP_002187115.2|PREDICTED: charged multivesicular body protein 4b [Taeniopygia guttata] 6e-36; gi|1003976045|ref|XP_015736875.1|PREDICTED: charged multivesicular body protein 4b [Coturnix japonica] 1e-35;
NvERTx.4.168131 R-8 0.996150062168 E-1 0.853148023231 Q9D8B3 Charged multivesicular body protein 4b gi|156401531|ref|XP_001639344.1|predicted protein [Nematostella vectensis], 5e-89
other nr_hits gi|999974407|gb|KXJ13581.1|Charged multivesicular body protein 4b [Exaiptasia pallida] 8e-67; gi|348521814|ref|XP_003448421.1|PREDICTED: charged multivesicular body protein 4b [Oreochromis niloticus] 7e-53; gi|831299987|ref|XP_012681931.1|PREDICTED: charged multivesicular body protein 4b [Clupea harengus] 2e-52; gi|530607552|ref|XP_005295458.1|PREDICTED: charged multivesicular body protein 4b [Chrysemys picta bellii] 2e-52; gi|1083297354|ref|XP_018597747.1|PREDICTED: charged multivesicular body protein 4b [Scleropages formosus] 2e-52; gi|583975425|ref|XP_006783088.1|PREDICTED: charged multivesicular body protein 4b-like [Neolamprologus brichardi] 2e-52; gi|498976551|ref|XP_004548898.1|PREDICTED: charged multivesicular body protein 4b [Maylandia zebra] 2e-52; gi|1079729403|ref|XP_018533761.1|PREDICTED: charged multivesicular body protein 4b [Lates calcarifer] 3e-52; gi|657574991|ref|XP_008291224.1|PREDICTED: charged multivesicular body protein 4b [Stegastes partitus] 3e-52;
NvERTx.4.173459 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173460 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185917 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200367 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200358 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200359 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202614 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202615 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202616 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202621 R-8 0.996150062168 E-1 0.853148023231 No_Uniprotmatch No_Description None
other nr_hits NA
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