#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

Search by gene name


Search by NvERTx ID





Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.66101 R-4 0.979042684515 E-5 0.999999999169 P70052 Nuclear receptor subfamily 2 group E member 1 gi|156378253|ref|XP_001631058.1|predicted protein [Nematostella vectensis], 2e-217
other nr_hits gi|999983275|gb|KXJ22416.1|Nuclear receptor subfamily 2 group F member 1-A [Exaiptasia pallida] 2e-98; gi|16797878|gb|AF323684_1|AAL29197.1|nuclear receptor AmNR4 isoform B [Acropora millepora] 3e-93; gi|16797876|gb|AF323683_1|AAL29196.1|nuclear receptor AmNR4 isoform A [Acropora millepora] 3e-93; gi|1005453461|ref|XP_015763888.1|PREDICTED: orphan steroid hormone receptor 2-like [Acropora digitifera] 6e-92; gi|16797886|gb|AF323688_1|AAL29201.1|nuclear receptor AmNR8, partial [Acropora millepora] 2e-88; gi|1005493188|ref|XP_015749252.1|PREDICTED: orphan steroid hormone receptor 2-like [Acropora digitifera] 2e-72; gi|929497036|ref|XP_014141373.1|PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X5 [Falco cherrug] 1e-62; gi|674048356|ref|XP_008830301.1|PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X2 [Nannospalax galili] 4e-61; gi|982280696|ref|XP_015286206.1|PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X3 [Macaca fascicularis] 3e-60;
NvERTx.4.10588 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.48065 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.61983 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.104261 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105580 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123407 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123408 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142141 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143172 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147107 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.148471 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156562 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description gi|156350389|ref|XP_001622262.1|predicted protein [Nematostella vectensis], 4e-07
other nr_hits NA
NvERTx.4.156563 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156807 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160637 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165145 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171507 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171508 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.172241 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173990 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179780 R-4 0.978982418927 E-1 0.85751034956 O54748 Serine/threonine-protein kinase 3 gi|1005486024|ref|XP_015779609.1|PREDICTED: serine/threonine-protein kinase 3-like [Acropora digitifera], 2e-67
other nr_hits gi|999977334|gb|KXJ16508.1|Serine/threonine-protein kinase 3 [Exaiptasia pallida] 5e-64; gi|957841822|ref|XP_014671241.1|PREDICTED: serine/threonine-protein kinase 3-like [Priapulus caudatus] 4e-48; gi|762070336|ref|XP_011444489.1|PREDICTED: serine/threonine-protein kinase 3 isoform X3 [Crassostrea gigas] 7e-48; gi|1083335945|ref|XP_018618611.1|PREDICTED: serine/threonine-protein kinase 3 [Scleropages formosus] 4e-46; gi|762070332|ref|XP_011444334.1|PREDICTED: serine/threonine-protein kinase 3 isoform X1 [Crassostrea gigas] 1e-45; gi|762070334|ref|XP_011444411.1|PREDICTED: serine/threonine-protein kinase 3 isoform X2 [Crassostrea gigas] 1e-45; gi|405952183|gb|EKC20024.1|Serine/threonine-protein kinase 3 [Crassostrea gigas] 1e-45; gi|1121805561|ref|XP_019406663.1|PREDICTED: serine/threonine-protein kinase 3 isoform X1 [Crocodylus porosus] 1e-45; gi|1117251504|ref|XP_019383532.1|PREDICTED: serine/threonine-protein kinase 3 isoform X1 [Gavialis gangeticus] 1e-45;
NvERTx.4.179781 R-4 0.978982418927 E-1 0.85751034956 O54748 Serine/threonine-protein kinase 3 gi|1005486024|ref|XP_015779609.1|PREDICTED: serine/threonine-protein kinase 3-like [Acropora digitifera], 2e-67
other nr_hits gi|999977334|gb|KXJ16508.1|Serine/threonine-protein kinase 3 [Exaiptasia pallida] 5e-64; gi|957841822|ref|XP_014671241.1|PREDICTED: serine/threonine-protein kinase 3-like [Priapulus caudatus] 4e-48; gi|762070336|ref|XP_011444489.1|PREDICTED: serine/threonine-protein kinase 3 isoform X3 [Crassostrea gigas] 7e-48; gi|1083335945|ref|XP_018618611.1|PREDICTED: serine/threonine-protein kinase 3 [Scleropages formosus] 4e-46; gi|762070332|ref|XP_011444334.1|PREDICTED: serine/threonine-protein kinase 3 isoform X1 [Crassostrea gigas] 1e-45; gi|762070334|ref|XP_011444411.1|PREDICTED: serine/threonine-protein kinase 3 isoform X2 [Crassostrea gigas] 1e-45; gi|405952183|gb|EKC20024.1|Serine/threonine-protein kinase 3 [Crassostrea gigas] 1e-45; gi|1121805561|ref|XP_019406663.1|PREDICTED: serine/threonine-protein kinase 3 isoform X1 [Crocodylus porosus] 1e-45; gi|1117251504|ref|XP_019383532.1|PREDICTED: serine/threonine-protein kinase 3 isoform X1 [Gavialis gangeticus] 1e-45;
NvERTx.4.187656 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.187655 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194480 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199178 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199179 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199187 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199190 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201452 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201453 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.4885 R-4 0.978982418927 E-1 0.85751034956 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.65389 R-4 0.97891632967 E-8 0.990429010168 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.65390 R-4 0.97891632967 E-8 0.990429010168 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194140 R-4 0.97891632967 E-8 0.990429010168 Q8WWQ8 Stabilin-2 gi|156379577|ref|XP_001631533.1|predicted protein [Nematostella vectensis], 1e-287
other nr_hits gi|478487403|ref|XP_004418095.1|PREDICTED: stabilin-2 [Ceratotherium simum simum] 1e-123; gi|507637985|ref|XP_004700796.1|PREDICTED: stabilin-2 [Echinops telfairi] 2e-123; gi|829805638|ref|XP_012628145.1|stabilin-2 [Microcebus murinus] 7e-123; gi|466007395|ref|XP_004269498.1|PREDICTED: stabilin-2 [Orcinus orca] 9e-123; gi|1131268369|ref|XP_019807896.1|PREDICTED: stabilin-2 [Tursiops truncatus] 2e-122; gi|742176897|ref|XP_010851723.1|PREDICTED: stabilin-2 [Bison bison bison] 3e-122; gi|586563027|ref|XP_006914765.1|PREDICTED: stabilin-2 [Pteropus alecto] 6e-122; gi|1012269793|ref|XP_015982480.1|PREDICTED: stabilin-2 isoform X1 [Rousettus aegyptiacus] 1e-121; gi|1012269797|ref|XP_015982482.1|PREDICTED: stabilin-2 isoform X3 [Rousettus aegyptiacus] 1e-121;
NvERTx.4.194141 R-4 0.97891632967 E-8 0.990429010168 Q9NY15 Stabilin-1 gi|156379577|ref|XP_001631533.1|predicted protein [Nematostella vectensis], 1e-109
other nr_hits gi|999991141|gb|KXJ30157.1|Transforming growth factor-beta-induced protein ig-h3 [Exaiptasia pallida] 1e-15; gi|1126160005|ref|XP_019622887.1|PREDICTED: stabilin-2-like, partial [Branchiostoma belcheri] 7e-15; gi|939306746|ref|XP_014268695.1|PREDICTED: stabilin-1 [Maylandia zebra] 9e-15; gi|583976328|ref|XP_006783526.1|PREDICTED: stabilin-1-like [Neolamprologus brichardi] 9e-15; gi|542186053|ref|XP_005469753.1|PREDICTED: stabilin-1 [Oreochromis niloticus] 2e-14; gi|260810573|ref|XP_002600035.1|hypothetical protein BRAFLDRAFT_143784 [Branchiostoma floridae] 3e-14; gi|930729835|ref|XP_005918037.2|PREDICTED: stabilin-1 [Haplochromis burtoni] 5e-14; gi|548491521|ref|XP_005749547.1|PREDICTED: stabilin-1 [Pundamilia nyererei] 6e-14; gi|765169002|ref|XP_011492916.1|PREDICTED: stabilin-1 [Oryzias latipes] 8e-14;
NvERTx.4.32157 R-4 0.978708370036 E-8 0.999986562305 Q0P4Y1 Histidine N-acetyltransferase gi|156408161|ref|XP_001641725.1|predicted protein [Nematostella vectensis], 4e-175
other nr_hits gi|999989411|gb|KXJ28449.1|Histidine N-acetyltransferase [Exaiptasia pallida] 3e-30; gi|156406032|ref|XP_001641035.1|predicted protein [Nematostella vectensis] 1e-18; gi|1005443563|ref|XP_015759119.1|PREDICTED: histidine N-acetyltransferase-like, partial [Acropora digitifera] 1e-17; gi|1005474265|ref|XP_015773918.1|PREDICTED: histidine N-acetyltransferase-like [Acropora digitifera] 1e-11; gi|156391291|ref|XP_001635702.1|predicted protein [Nematostella vectensis] 3e-09; gi|163915275|ref|NP_001106598.1|uncharacterized protein LOC100127817 [Xenopus tropicalis] 4e-09; gi|999991028|gb|KXJ30046.1|Histidine N-acetyltransferase [Exaiptasia pallida] 9e-09; gi|512876783|ref|XP_004919140.1|PREDICTED: histidine N-acetyltransferase [Xenopus tropicalis] 9e-09; gi|165971212|gb|AAI58537.1|LOC100145100 protein, partial [Xenopus tropicalis] 9e-09;
NvERTx.4.179899 R-4 0.978708370036 E-8 0.999986562305 Q0P4Y1 Histidine N-acetyltransferase gi|156408161|ref|XP_001641725.1|predicted protein [Nematostella vectensis], 6e-225
other nr_hits gi|999989411|gb|KXJ28449.1|Histidine N-acetyltransferase [Exaiptasia pallida] 1e-40; gi|156406032|ref|XP_001641035.1|predicted protein [Nematostella vectensis] 5e-25; gi|1005443563|ref|XP_015759119.1|PREDICTED: histidine N-acetyltransferase-like, partial [Acropora digitifera] 3e-20; gi|1005474265|ref|XP_015773918.1|PREDICTED: histidine N-acetyltransferase-like [Acropora digitifera] 2e-17; gi|163915275|ref|NP_001106598.1|uncharacterized protein LOC100127817 [Xenopus tropicalis] 8e-11; gi|512876783|ref|XP_004919140.1|PREDICTED: histidine N-acetyltransferase [Xenopus tropicalis] 7e-10; gi|165971212|gb|AAI58537.1|LOC100145100 protein, partial [Xenopus tropicalis] 7e-10; gi|156391291|ref|XP_001635702.1|predicted protein [Nematostella vectensis] 5e-09; gi|999991028|gb|KXJ30046.1|Histidine N-acetyltransferase [Exaiptasia pallida] 1e-08;
NvERTx.4.231064 R-4 0.9785602025 E-6 0.999795732247 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.29714 R-4 0.9785602025 E-6 0.999795732247 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.39166 R-4 0.9785602025 E-6 0.999795732247 A0A1I8HF03_9PLAT Uncharacterized protein {ECO:0000313|WBParaSite:maker-uti_cns_0005793-snap-gene-0.3-mRNA-1} gi|1114670975|ref|WP_072096307.1|hypothetical protein [Yersinia frederiksenii], 4e-06
other nr_hits gi|1006134856|ref|WP_061730500.1|hypothetical protein [Neisseria meningitidis] 4e-06; gi|1005634508|ref|WP_061704509.1|hypothetical protein [Neisseria meningitidis] 4e-06; gi|900140543|embl|CQH59054.1|Lamprin [Yersinia frederiksenii] 4e-06; gi|682378953|gb|KFY62680.1|hypothetical protein V496_04445 [Pseudogymnoascus sp. VKM F-4515 (FW-2607)] 1e-05; gi|1050397076|gb|OCT99265.1|hypothetical protein XELAEV_18005053mg, partial [Xenopus laevis] 2e-05;
NvERTx.4.39168 R-4 0.9785602025 E-6 0.999795732247 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122972 R-4 0.9785602025 E-6 0.999795732247 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122973 R-4 0.9785602025 E-6 0.999795732247 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122974 R-4 0.9785602025 E-6 0.999795732247 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122975 R-4 0.9785602025 E-6 0.999795732247 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122976 R-4 0.9785602025 E-6 0.999795732247 A8WGF4 Intraflagellar transport protein 122 homolog gi|156378354|ref|XP_001631108.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|585683613|ref|XP_006812442.1|PREDICTED: LOW QUALITY PROTEIN: intraflagellar transport protein 122 homolog [Saccoglossus kowalevskii] 0e+00; gi|1126164634|ref|XP_019647680.1|PREDICTED: intraflagellar transport protein 122 homolog [Branchiostoma belcheri] 0e+00; gi|260809912|ref|XP_002599748.1|hypothetical protein BRAFLDRAFT_205575 [Branchiostoma floridae] 0e+00; gi|919024807|ref|XP_013396252.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X2 [Lingula anatina] 0e+00; gi|919024804|ref|XP_013396251.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X1 [Lingula anatina] 0e+00; gi|573886299|ref|XP_006631002.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X2 [Lepisosteus oculatus] 0e+00; gi|1049244287|ref|XP_017561212.1|PREDICTED: intraflagellar transport protein 122 homolog [Pygocentrus nattereri] 0e+00; gi|632946684|ref|XP_007888678.1|PREDICTED: intraflagellar transport protein 122 homolog [Callorhinchus milii] 0e+00; gi|929227720|ref|XP_013990298.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X4 [Salmo salar] 0e+00;
NvERTx.4.122985 R-4 0.9785602025 E-6 0.999795732247 A8WGF4 Intraflagellar transport protein 122 homolog gi|156378354|ref|XP_001631108.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|1126164634|ref|XP_019647680.1|PREDICTED: intraflagellar transport protein 122 homolog [Branchiostoma belcheri] 1e-305; gi|919024807|ref|XP_013396252.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X2 [Lingula anatina] 1e-305; gi|585683613|ref|XP_006812442.1|PREDICTED: LOW QUALITY PROTEIN: intraflagellar transport protein 122 homolog [Saccoglossus kowalevskii] 9e-305; gi|919024804|ref|XP_013396251.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X1 [Lingula anatina] 6e-304; gi|260809912|ref|XP_002599748.1|hypothetical protein BRAFLDRAFT_205575 [Branchiostoma floridae] 1e-303; gi|871217522|ref|XP_012935250.1|PREDICTED: intraflagellar transport protein 122 homolog [Aplysia californica] 1e-302; gi|1139832734|ref|XP_019929492.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X2 [Crassostrea gigas] 2e-302; gi|762135662|ref|XP_011451083.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X1 [Crassostrea gigas] 2e-302; gi|762135664|ref|XP_011451084.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X3 [Crassostrea gigas] 2e-302;
NvERTx.4.122986 R-4 0.9785602025 E-6 0.999795732247 A8WGF4 Intraflagellar transport protein 122 homolog gi|156378354|ref|XP_001631108.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|1126164634|ref|XP_019647680.1|PREDICTED: intraflagellar transport protein 122 homolog [Branchiostoma belcheri] 0e+00; gi|260809912|ref|XP_002599748.1|hypothetical protein BRAFLDRAFT_205575 [Branchiostoma floridae] 0e+00; gi|919024807|ref|XP_013396252.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X2 [Lingula anatina] 0e+00; gi|919024804|ref|XP_013396251.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X1 [Lingula anatina] 0e+00; gi|585683613|ref|XP_006812442.1|PREDICTED: LOW QUALITY PROTEIN: intraflagellar transport protein 122 homolog [Saccoglossus kowalevskii] 0e+00; gi|1049244287|ref|XP_017561212.1|PREDICTED: intraflagellar transport protein 122 homolog [Pygocentrus nattereri] 0e+00; gi|573886299|ref|XP_006631002.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X2 [Lepisosteus oculatus] 0e+00; gi|1042360983|ref|XP_017324456.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X1 [Ictalurus punctatus] 0e+00; gi|1042360985|ref|XP_017324457.1|PREDICTED: intraflagellar transport protein 122 homolog isoform X2 [Ictalurus punctatus] 0e+00;
More