#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.141394 R-4 0.996253250468 E-8 0.999942755923 Q4W8A2 Solute carrier family 22 member 8 gi|156386357|ref|XP_001633879.1|predicted protein [Nematostella vectensis], 1e-66
other nr_hits gi|156333965|ref|XP_001619456.1|hypothetical protein NEMVEDRAFT_v1g224161 [Nematostella vectensis] 3e-62; gi|156386355|ref|XP_001633878.1|predicted protein [Nematostella vectensis] 8e-61; gi|156366919|ref|XP_001627168.1|predicted protein [Nematostella vectensis] 3e-40; gi|999988745|gb|KXJ27815.1|Organic cation transporter-like protein [Exaiptasia pallida] 4e-27; gi|999986792|gb|KXJ25921.1|Organic cation transporter protein [Exaiptasia pallida] 4e-26; gi|156386598|ref|XP_001633999.1|predicted protein [Nematostella vectensis] 1e-23; gi|999989828|gb|KXJ28860.1|Organic cation transporter-like protein [Exaiptasia pallida] 3e-23; gi|999990044|gb|KXJ29074.1|Organic cation transporter protein [Exaiptasia pallida] 5e-23; gi|999989948|gb|KXJ28978.1|Organic cation transporter protein [Exaiptasia pallida] 7e-23;
NvERTx.4.141404 R-4 0.996253250468 E-8 0.999942755923 Q9LHQ6 Organic cation/carnitine transporter 4 gi|156386357|ref|XP_001633879.1|predicted protein [Nematostella vectensis], 3e-64
other nr_hits gi|156386355|ref|XP_001633878.1|predicted protein [Nematostella vectensis] 6e-63; gi|156333965|ref|XP_001619456.1|hypothetical protein NEMVEDRAFT_v1g224161 [Nematostella vectensis] 8e-63; gi|156366919|ref|XP_001627168.1|predicted protein [Nematostella vectensis] 9e-39; gi|999988745|gb|KXJ27815.1|Organic cation transporter-like protein [Exaiptasia pallida] 2e-26; gi|999986792|gb|KXJ25921.1|Organic cation transporter protein [Exaiptasia pallida] 8e-26; gi|156386598|ref|XP_001633999.1|predicted protein [Nematostella vectensis] 1e-22; gi|999989828|gb|KXJ28860.1|Organic cation transporter-like protein [Exaiptasia pallida] 2e-22; gi|999989948|gb|KXJ28978.1|Organic cation transporter protein [Exaiptasia pallida] 2e-22; gi|999989952|gb|KXJ28982.1|Organic cation transporter protein [Exaiptasia pallida] 2e-22;
NvERTx.4.141395 R-4 0.996253250468 E-8 0.999942755923 Q8HY24 Solute carrier family 22 member 8 gi|156386357|ref|XP_001633879.1|predicted protein [Nematostella vectensis], 1e-62
other nr_hits gi|156333965|ref|XP_001619456.1|hypothetical protein NEMVEDRAFT_v1g224161 [Nematostella vectensis] 3e-54; gi|156386355|ref|XP_001633878.1|predicted protein [Nematostella vectensis] 8e-53; gi|156366919|ref|XP_001627168.1|predicted protein [Nematostella vectensis] 1e-43; gi|999988745|gb|KXJ27815.1|Organic cation transporter-like protein [Exaiptasia pallida] 8e-29; gi|999986792|gb|KXJ25921.1|Organic cation transporter protein [Exaiptasia pallida] 1e-26; gi|999989828|gb|KXJ28860.1|Organic cation transporter-like protein [Exaiptasia pallida] 7e-25; gi|156386598|ref|XP_001633999.1|predicted protein [Nematostella vectensis] 9e-25; gi|999989952|gb|KXJ28982.1|Organic cation transporter protein [Exaiptasia pallida] 3e-24; gi|999983095|gb|KXJ22238.1|Organic cation transporter 1 [Exaiptasia pallida] 6e-24;
NvERTx.4.141400 R-4 0.996253250468 E-8 0.999942755923 Q9Y226 Solute carrier family 22 member 13 gi|156386355|ref|XP_001633878.1|predicted protein [Nematostella vectensis], 5e-92
other nr_hits gi|156386357|ref|XP_001633879.1|predicted protein [Nematostella vectensis] 2e-87; gi|156333965|ref|XP_001619456.1|hypothetical protein NEMVEDRAFT_v1g224161 [Nematostella vectensis] 6e-75; gi|156366919|ref|XP_001627168.1|predicted protein [Nematostella vectensis] 1e-72; gi|999986792|gb|KXJ25921.1|Organic cation transporter protein [Exaiptasia pallida] 3e-58; gi|999988745|gb|KXJ27815.1|Organic cation transporter-like protein [Exaiptasia pallida] 4e-51; gi|156354182|ref|XP_001623279.1|predicted protein [Nematostella vectensis] 2e-50; gi|999989725|gb|KXJ28757.1|Organic cation transporter protein [Exaiptasia pallida] 2e-49; gi|156362387|ref|XP_001625760.1|predicted protein [Nematostella vectensis] 5e-49; gi|156367170|ref|XP_001627292.1|predicted protein [Nematostella vectensis] 8e-48;
NvERTx.4.141402 R-4 0.996253250468 E-8 0.999942755923 Q4W8A2 Solute carrier family 22 member 8 gi|156386357|ref|XP_001633879.1|predicted protein [Nematostella vectensis], 1e-66
other nr_hits gi|156333965|ref|XP_001619456.1|hypothetical protein NEMVEDRAFT_v1g224161 [Nematostella vectensis] 3e-62; gi|156386355|ref|XP_001633878.1|predicted protein [Nematostella vectensis] 8e-61; gi|156366919|ref|XP_001627168.1|predicted protein [Nematostella vectensis] 3e-40; gi|999988745|gb|KXJ27815.1|Organic cation transporter-like protein [Exaiptasia pallida] 4e-27; gi|999986792|gb|KXJ25921.1|Organic cation transporter protein [Exaiptasia pallida] 4e-26; gi|156386598|ref|XP_001633999.1|predicted protein [Nematostella vectensis] 1e-23; gi|999989828|gb|KXJ28860.1|Organic cation transporter-like protein [Exaiptasia pallida] 3e-23; gi|999990044|gb|KXJ29074.1|Organic cation transporter protein [Exaiptasia pallida] 5e-23; gi|999989948|gb|KXJ28978.1|Organic cation transporter protein [Exaiptasia pallida] 7e-23;
NvERTx.4.141403 R-4 0.996253250468 E-8 0.999942755923 Q4W8A2 Solute carrier family 22 member 8 gi|156386357|ref|XP_001633879.1|predicted protein [Nematostella vectensis], 3e-59
other nr_hits gi|156333965|ref|XP_001619456.1|hypothetical protein NEMVEDRAFT_v1g224161 [Nematostella vectensis] 4e-55; gi|156386355|ref|XP_001633878.1|predicted protein [Nematostella vectensis] 9e-54; gi|156366919|ref|XP_001627168.1|predicted protein [Nematostella vectensis] 3e-40; gi|999988745|gb|KXJ27815.1|Organic cation transporter-like protein [Exaiptasia pallida] 6e-27; gi|999986792|gb|KXJ25921.1|Organic cation transporter protein [Exaiptasia pallida] 2e-24; gi|999989828|gb|KXJ28860.1|Organic cation transporter-like protein [Exaiptasia pallida] 4e-23; gi|156386598|ref|XP_001633999.1|predicted protein [Nematostella vectensis] 5e-23; gi|999989952|gb|KXJ28982.1|Organic cation transporter protein [Exaiptasia pallida] 2e-22; gi|156367170|ref|XP_001627292.1|predicted protein [Nematostella vectensis] 2e-22;
NvERTx.4.141396 R-4 0.996253250468 E-8 0.999942755923 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174578 R-4 0.996253250468 E-8 0.999942755923 Q95R48 Organic cation transporter-like protein gi|156386357|ref|XP_001633879.1|predicted protein [Nematostella vectensis], 3e-177
other nr_hits gi|156386355|ref|XP_001633878.1|predicted protein [Nematostella vectensis] 5e-108; gi|156366919|ref|XP_001627168.1|predicted protein [Nematostella vectensis] 5e-92; gi|999986792|gb|KXJ25921.1|Organic cation transporter protein [Exaiptasia pallida] 4e-89; gi|999989725|gb|KXJ28757.1|Organic cation transporter protein [Exaiptasia pallida] 3e-77; gi|156395248|ref|XP_001637023.1|predicted protein [Nematostella vectensis] 7e-73; gi|999988745|gb|KXJ27815.1|Organic cation transporter-like protein [Exaiptasia pallida] 6e-72; gi|156382272|ref|XP_001632478.1|predicted protein [Nematostella vectensis] 1e-71; gi|156351343|ref|XP_001622468.1|predicted protein [Nematostella vectensis] 3e-70; gi|156354337|ref|XP_001623353.1|predicted protein [Nematostella vectensis] 7e-70;
NvERTx.4.174579 R-4 0.996253250468 E-8 0.999942755923 Q95R48 Organic cation transporter-like protein gi|156386357|ref|XP_001633879.1|predicted protein [Nematostella vectensis], 5e-150
other nr_hits gi|156386355|ref|XP_001633878.1|predicted protein [Nematostella vectensis] 1e-110; gi|999986792|gb|KXJ25921.1|Organic cation transporter protein [Exaiptasia pallida] 3e-81; gi|156366919|ref|XP_001627168.1|predicted protein [Nematostella vectensis] 4e-76; gi|999988745|gb|KXJ27815.1|Organic cation transporter-like protein [Exaiptasia pallida] 3e-70; gi|999989725|gb|KXJ28757.1|Organic cation transporter protein [Exaiptasia pallida] 8e-70; gi|999990024|gb|KXJ29054.1|Organic cation transporter protein [Exaiptasia pallida] 2e-67; gi|156354337|ref|XP_001623353.1|predicted protein [Nematostella vectensis] 3e-67; gi|156382272|ref|XP_001632478.1|predicted protein [Nematostella vectensis] 4e-67; gi|156395248|ref|XP_001637023.1|predicted protein [Nematostella vectensis] 4e-66;
NvERTx.4.162355 R-4 0.996203351126 E-1 0.99999995641 No_Uniprotmatch No_Description gi|156402911|ref|XP_001639833.1|predicted protein [Nematostella vectensis], 1e-14
other nr_hits NA
NvERTx.4.162358 R-4 0.996203351126 E-1 0.99999995641 No_Uniprotmatch No_Description gi|156402911|ref|XP_001639833.1|predicted protein [Nematostella vectensis], 2e-232
other nr_hits gi|1005491855|ref|XP_015748602.1|PREDICTED: uncharacterized protein LOC107328375 [Acropora digitifera] 8e-12; gi|1005433508|ref|XP_015754301.1|PREDICTED: uncharacterized protein LOC107333951 [Acropora digitifera] 4e-10; gi|999974889|gb|KXJ14063.1|hypothetical protein AC249_AIPGENE20294 [Exaiptasia pallida] 2e-09; gi|1005433510|ref|XP_015754302.1|PREDICTED: uncharacterized protein LOC107333952 isoform X1 [Acropora digitifera] 2e-09; gi|1005435485|ref|XP_015755253.1|PREDICTED: uncharacterized protein LOC107334800 [Acropora digitifera] 6e-09;
NvERTx.4.162359 R-4 0.996203351126 E-1 0.99999995641 No_Uniprotmatch No_Description gi|156402911|ref|XP_001639833.1|predicted protein [Nematostella vectensis], 4e-154
other nr_hits gi|999974889|gb|KXJ14063.1|hypothetical protein AC249_AIPGENE20294 [Exaiptasia pallida] 1e-11; gi|1005433508|ref|XP_015754301.1|PREDICTED: uncharacterized protein LOC107333951 [Acropora digitifera] 1e-11; gi|1005491855|ref|XP_015748602.1|PREDICTED: uncharacterized protein LOC107328375 [Acropora digitifera] 1e-10; gi|1005433510|ref|XP_015754302.1|PREDICTED: uncharacterized protein LOC107333952 isoform X1 [Acropora digitifera] 3e-09; gi|1005435485|ref|XP_015755253.1|PREDICTED: uncharacterized protein LOC107334800 [Acropora digitifera] 1e-08;
NvERTx.4.162360 R-4 0.996203351126 E-1 0.99999995641 No_Uniprotmatch No_Description gi|156402911|ref|XP_001639833.1|predicted protein [Nematostella vectensis], 4e-138
other nr_hits NA
NvERTx.4.162368 R-4 0.996203351126 E-1 0.99999995641 No_Uniprotmatch No_Description gi|156402911|ref|XP_001639833.1|predicted protein [Nematostella vectensis], 1e-154
other nr_hits gi|1005433508|ref|XP_015754301.1|PREDICTED: uncharacterized protein LOC107333951 [Acropora digitifera] 8e-12; gi|999974889|gb|KXJ14063.1|hypothetical protein AC249_AIPGENE20294 [Exaiptasia pallida] 1e-11; gi|1005491855|ref|XP_015748602.1|PREDICTED: uncharacterized protein LOC107328375 [Acropora digitifera] 7e-11; gi|1005433510|ref|XP_015754302.1|PREDICTED: uncharacterized protein LOC107333952 isoform X1 [Acropora digitifera] 2e-09; gi|1005435485|ref|XP_015755253.1|PREDICTED: uncharacterized protein LOC107334800 [Acropora digitifera] 1e-08;
NvERTx.4.74739 R-4 0.996172860289 E-4 0.708598984058 I1GK63_AMPQE Uncharacterized protein {ECO:0000313|EnsemblMetazoa:PAC:15728815} gi|156360664|ref|XP_001625146.1|predicted protein [Nematostella vectensis], 1e-196
other nr_hits gi|156366160|ref|XP_001627008.1|predicted protein [Nematostella vectensis] 6e-09; gi|156394183|ref|XP_001636706.1|predicted protein [Nematostella vectensis] 5e-07; gi|557023825|ref|XP_006012116.1|PREDICTED: uncharacterized protein LOC102358201 [Latimeria chalumnae] 8e-07; gi|1133447367|ref|XP_019850459.1|PREDICTED: uncharacterized protein LOC109581100 [Amphimedon queenslandica] 2e-05;
NvERTx.4.74740 R-4 0.996172860289 E-4 0.708598984058 I1GK63_AMPQE Uncharacterized protein {ECO:0000313|EnsemblMetazoa:PAC:15728815} gi|156360664|ref|XP_001625146.1|predicted protein [Nematostella vectensis], 1e-200
other nr_hits gi|156366160|ref|XP_001627008.1|predicted protein [Nematostella vectensis] 6e-09; gi|156394183|ref|XP_001636706.1|predicted protein [Nematostella vectensis] 4e-07; gi|557023825|ref|XP_006012116.1|PREDICTED: uncharacterized protein LOC102358201 [Latimeria chalumnae] 7e-07; gi|1078802360|ref|XP_018494048.1|PREDICTED: GATA zinc finger domain-containing protein 10-like [Galendromus occidentalis] 8e-06; gi|1133447367|ref|XP_019850459.1|PREDICTED: uncharacterized protein LOC109581100 [Amphimedon queenslandica] 2e-05;
NvERTx.4.208672 R-4 0.996172860289 E-4 0.708598984058 No_Uniprotmatch No_Description gi|156360664|ref|XP_001625146.1|predicted protein [Nematostella vectensis], 2e-32
other nr_hits NA
NvERTx.4.8054 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description gi|156363189|ref|XP_001625929.1|predicted protein [Nematostella vectensis], 9e-09
other nr_hits NA
NvERTx.4.8055 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description gi|156363189|ref|XP_001625929.1|predicted protein [Nematostella vectensis], 9e-09
other nr_hits NA
NvERTx.4.102226 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102214 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102222 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111246 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111247 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111250 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111251 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111252 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111253 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168205 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168195 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168196 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197889 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197890 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197892 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199113 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199123 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description gi|156382756|ref|XP_001632718.1|predicted protein [Nematostella vectensis], 1e-66
other nr_hits gi|156363189|ref|XP_001625929.1|predicted protein [Nematostella vectensis] 5e-08;
NvERTx.4.199124 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199126 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199127 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199128 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199114 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description gi|156382756|ref|XP_001632718.1|predicted protein [Nematostella vectensis], 8e-115
other nr_hits gi|156363189|ref|XP_001625929.1|predicted protein [Nematostella vectensis] 9e-21; gi|156397255|ref|XP_001637807.1|predicted protein [Nematostella vectensis] 3e-07;
NvERTx.4.199115 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description gi|156382756|ref|XP_001632718.1|predicted protein [Nematostella vectensis], 4e-92
other nr_hits gi|156363189|ref|XP_001625929.1|predicted protein [Nematostella vectensis] 3e-16; gi|156397255|ref|XP_001637807.1|predicted protein [Nematostella vectensis] 2e-14;
NvERTx.4.199117 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199118 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description gi|156382756|ref|XP_001632718.1|predicted protein [Nematostella vectensis], 1e-66
other nr_hits gi|156363189|ref|XP_001625929.1|predicted protein [Nematostella vectensis] 5e-08;
NvERTx.4.199119 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199120 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199121 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199122 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description gi|156382756|ref|XP_001632718.1|predicted protein [Nematostella vectensis], 1e-64
other nr_hits NA
NvERTx.4.199116 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description gi|156382756|ref|XP_001632718.1|predicted protein [Nematostella vectensis], 4e-09
other nr_hits NA
NvERTx.4.199129 R-4 0.996159433943 E-4 0.995798464858 No_Uniprotmatch No_Description gi|156382756|ref|XP_001632718.1|predicted protein [Nematostella vectensis], 2e-10
other nr_hits NA
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