#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.110643 R-4 0.620702624471 E-7 0.99983042491 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.190072 R-4 0.620443026325 E-1 0.99999999993 Q6A070 TOG array regulator of axonemal microtubules protein 1 gi|999991003|gb|KXJ30021.1|Protein FAM179B [Exaiptasia pallida], 5e-135
other nr_hits gi|156339466|ref|XP_001620171.1|hypothetical protein NEMVEDRAFT_v1g3739 [Nematostella vectensis] 2e-102; gi|156404980|ref|XP_001640510.1|predicted protein [Nematostella vectensis] 7e-87; gi|871270137|ref|XP_012944873.1|PREDICTED: protein FAM179B-like [Aplysia californica] 3e-73; gi|919069227|ref|XP_013416093.1|PREDICTED: protein FAM179B-like [Lingula anatina] 9e-71; gi|585708373|ref|XP_006824155.1|PREDICTED: protein FAM179B-like [Saccoglossus kowalevskii] 9e-71; gi|1126217360|ref|XP_019642730.1|PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC109484013 [Branchiostoma belcheri] 1e-69; gi|1139831740|ref|XP_019929279.1|PREDICTED: crescerin-1 isoform X6 [Crassostrea gigas] 7e-69; gi|1139831738|ref|XP_019929278.1|PREDICTED: crescerin-1 isoform X5 [Crassostrea gigas] 7e-69; gi|1139831742|ref|XP_019929280.1|PREDICTED: crescerin-1 isoform X7 [Crassostrea gigas] 7e-69;
NvERTx.4.190073 R-4 0.620443026325 E-1 0.99999999993 Q6A070 TOG array regulator of axonemal microtubules protein 1 gi|999991003|gb|KXJ30021.1|Protein FAM179B [Exaiptasia pallida], 5e-135
other nr_hits gi|156339466|ref|XP_001620171.1|hypothetical protein NEMVEDRAFT_v1g3739 [Nematostella vectensis] 2e-102; gi|156404980|ref|XP_001640510.1|predicted protein [Nematostella vectensis] 7e-87; gi|871270137|ref|XP_012944873.1|PREDICTED: protein FAM179B-like [Aplysia californica] 3e-73; gi|919069227|ref|XP_013416093.1|PREDICTED: protein FAM179B-like [Lingula anatina] 9e-71; gi|585708373|ref|XP_006824155.1|PREDICTED: protein FAM179B-like [Saccoglossus kowalevskii] 9e-71; gi|1126217360|ref|XP_019642730.1|PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC109484013 [Branchiostoma belcheri] 1e-69; gi|1139831740|ref|XP_019929279.1|PREDICTED: crescerin-1 isoform X6 [Crassostrea gigas] 7e-69; gi|1139831738|ref|XP_019929278.1|PREDICTED: crescerin-1 isoform X5 [Crassostrea gigas] 7e-69; gi|1139831742|ref|XP_019929280.1|PREDICTED: crescerin-1 isoform X7 [Crassostrea gigas] 7e-69;
NvERTx.4.225480 R-4 0.620443026325 E-1 0.99999999993 W4XKP3_STRPU Uncharacterized protein {ECO:0000313|EnsemblMetazoa:SPU_003971-tr} gi|999991003|gb|KXJ30021.1|Protein FAM179B [Exaiptasia pallida], 2e-08
other nr_hits gi|908500624|ref|XP_013062116.1|PREDICTED: protein FAM179B-like, partial [Biomphalaria glabrata] 4e-06; gi|908421262|ref|XP_013071989.1|PREDICTED: protein FAM179B-like [Biomphalaria glabrata] 4e-06; gi|871270137|ref|XP_012944873.1|PREDICTED: protein FAM179B-like [Aplysia californica] 6e-06; gi|780125634|ref|XP_785383.4|PREDICTED: protein FAM179B [Strongylocentrotus purpuratus] 4e-05;
NvERTx.4.111564 R-4 0.62023205919 E-1 0.97945154616 Q9NQX0 Putative histone-lysine N-methyltransferase PRDM6 gi|269784965|ref|NP_001161634.1|PR domain containing 6-like protein [Saccoglossus kowalevskii], 1e-36
other nr_hits gi|632962888|ref|XP_007897572.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 [Callorhinchus milii] 2e-36; gi|768949369|ref|XP_011613838.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 [Takifugu rubripes] 3e-36; gi|1109001014|ref|XP_019131672.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 [Larimichthys crocea] 7e-36; gi|1079717366|ref|XP_018519048.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 [Lates calcarifer] 9e-36; gi|930755984|ref|XP_014194349.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 isoform X1 [Haplochromis burtoni] 9e-36; gi|923803137|ref|XP_013765658.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 [Pundamilia nyererei] 9e-36; gi|657565259|ref|XP_008285918.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 isoform X1 [Stegastes partitus] 9e-36; gi|657565261|ref|XP_008285919.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 isoform X2 [Stegastes partitus] 9e-36; gi|554857088|ref|XP_005938704.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 isoform X2 [Haplochromis burtoni] 9e-36;
NvERTx.4.116965 R-4 0.62023205919 E-1 0.97945154616 A6QPM3 Putative histone-lysine N-methyltransferase PRDM6 gi|156350179|ref|XP_001622177.1|hypothetical protein NEMVEDRAFT_v1g142228 [Nematostella vectensis], 1e-61
other nr_hits gi|999989780|gb|KXJ28812.1|putative histone-lysine N-methyltransferase PRDM6 [Exaiptasia pallida] 3e-32; gi|999989801|gb|KXJ28833.1|putative histone-lysine N-methyltransferase PRDM6 [Exaiptasia pallida] 3e-32; gi|156377845|ref|XP_001630856.1|predicted protein [Nematostella vectensis] 2e-31; gi|269784965|ref|NP_001161634.1|PR domain containing 6-like protein [Saccoglossus kowalevskii] 3e-31; gi|1005432943|ref|XP_015754034.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 [Acropora digitifera] 4e-31; gi|156398446|ref|XP_001638199.1|predicted protein [Nematostella vectensis] 4e-31; gi|156398450|ref|XP_001638201.1|predicted protein [Nematostella vectensis] 4e-31; gi|999978903|gb|KXJ18077.1|putative histone-lysine N-methyltransferase PRDM6 [Exaiptasia pallida] 7e-31; gi|1042357558|ref|XP_017322649.1|PREDICTED: putative histone-lysine N-methyltransferase PRDM6 isoform X2 [Ictalurus punctatus] 8e-31;
NvERTx.4.137536 R-4 0.619979548108 E-1 1.0 Q9BRR9 Rho GTPase-activating protein 9 gi|156407412|ref|XP_001641538.1|predicted protein [Nematostella vectensis], 2e-110
other nr_hits gi|999973456|gb|KXJ12630.1|Rho GTPase-activating protein 15 [Exaiptasia pallida] 1e-62; gi|156407410|ref|XP_001641537.1|predicted protein [Nematostella vectensis] 6e-61; gi|871247484|ref|XP_012940686.1|PREDICTED: rho GTPase-activating protein 12-like isoform X6 [Aplysia californica] 5e-33; gi|837784476|ref|XP_012784749.1|PREDICTED: LOW QUALITY PROTEIN: rho GTPase-activating protein 12-like [Ochotona princeps] 1e-28; gi|908405338|ref|XP_013087905.1|PREDICTED: rho GTPase-activating protein 15-like isoform X7 [Biomphalaria glabrata] 2e-28; gi|1005472796|ref|XP_015773256.1|PREDICTED: rho GTPase-activating protein 15-like [Acropora digitifera] 3e-28; gi|1025240077|ref|XP_016366211.1|PREDICTED: rho GTPase-activating protein 12-like isoform X7 [Sinocyclocheilus rhinocerous] 7e-27; gi|449662373|ref|XP_002164768.2|PREDICTED: rho GTPase-activating protein 15-like [Hydra vulgaris] 3e-25; gi|960971197|ref|XP_014800532.1|PREDICTED: rho GTPase-activating protein 12 isoform X10 [Calidris pugnax] 4e-24;
NvERTx.4.137537 R-4 0.619979548108 E-1 1.0 Q8IWW6 Rho GTPase-activating protein 12 gi|156407412|ref|XP_001641538.1|predicted protein [Nematostella vectensis], 2e-110
other nr_hits gi|999973456|gb|KXJ12630.1|Rho GTPase-activating protein 15 [Exaiptasia pallida] 5e-106; gi|156407410|ref|XP_001641537.1|predicted protein [Nematostella vectensis] 7e-61; gi|585713888|ref|XP_006825172.1|PREDICTED: rho GTPase-activating protein 12-like [Saccoglossus kowalevskii] 1e-45; gi|449662373|ref|XP_002164768.2|PREDICTED: rho GTPase-activating protein 15-like [Hydra vulgaris] 3e-42; gi|1005472796|ref|XP_015773256.1|PREDICTED: rho GTPase-activating protein 15-like [Acropora digitifera] 1e-40; gi|675369995|gb|KFM62897.1|Rho GTPase-activating protein 12, partial [Stegodyphus mimosarum] 2e-33; gi|871247484|ref|XP_012940686.1|PREDICTED: rho GTPase-activating protein 12-like isoform X6 [Aplysia californica] 1e-32; gi|942115299|ref|XP_014353853.1|PREDICTED: rho GTPase-activating protein 9 isoform X2 [Latimeria chalumnae] 2e-32; gi|556946299|ref|XP_005986395.1|PREDICTED: rho GTPase-activating protein 9 isoform X1 [Latimeria chalumnae] 2e-32;
NvERTx.4.137541 R-4 0.619979548108 E-1 1.0 Q9BRR9 Rho GTPase-activating protein 9 gi|156407412|ref|XP_001641538.1|predicted protein [Nematostella vectensis], 1e-110
other nr_hits gi|999973456|gb|KXJ12630.1|Rho GTPase-activating protein 15 [Exaiptasia pallida] 1e-73; gi|1005472796|ref|XP_015773256.1|PREDICTED: rho GTPase-activating protein 15-like [Acropora digitifera] 6e-34; gi|449662373|ref|XP_002164768.2|PREDICTED: rho GTPase-activating protein 15-like [Hydra vulgaris] 1e-26; gi|585713888|ref|XP_006825172.1|PREDICTED: rho GTPase-activating protein 12-like [Saccoglossus kowalevskii] 1e-22; gi|675369995|gb|KFM62897.1|Rho GTPase-activating protein 12, partial [Stegodyphus mimosarum] 2e-17; gi|1005457133|ref|XP_015765695.1|PREDICTED: rho GTPase-activating protein 12-like [Acropora digitifera] 1e-14; gi|919094506|ref|XP_013384122.1|PREDICTED: rho GTPase-activating protein 15-like isoform X7 [Lingula anatina] 1e-14; gi|847006894|ref|XP_012803520.1|PREDICTED: rho GTPase-activating protein 27 [Jaculus jaculus] 1e-14; gi|908405338|ref|XP_013087905.1|PREDICTED: rho GTPase-activating protein 15-like isoform X7 [Biomphalaria glabrata] 1e-12;
NvERTx.4.53202 R-4 0.619959681156 E-8 0.752873912886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.70285 R-4 0.619959681156 E-8 0.752873912886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203945 R-4 0.619959681156 E-8 0.752873912886 No_Uniprotmatch No_Description gi|156352497|ref|XP_001622786.1|predicted protein [Nematostella vectensis], 1e-33
other nr_hits NA
NvERTx.4.203956 R-4 0.619959681156 E-8 0.752873912886 No_Uniprotmatch No_Description gi|156352497|ref|XP_001622786.1|predicted protein [Nematostella vectensis], 5e-32
other nr_hits gi|156404087|ref|XP_001640239.1|predicted protein [Nematostella vectensis] 4e-09;
NvERTx.4.73805 R-4 0.619011383156 E-2 0.999999999968 Q7Z7J7 Lipoma HMGIC fusion partner-like 4 protein gi|156372838|ref|XP_001629242.1|predicted protein [Nematostella vectensis], 8e-139
other nr_hits gi|1005423273|ref|XP_015770800.1|PREDICTED: lipoma HMGIC fusion partner-like 3 protein [Acropora digitifera] 2e-47; gi|999983747|gb|KXJ22888.1|Tetraspan membrane protein of hair cell stereocilia [Exaiptasia pallida] 5e-43; gi|395824520|ref|XP_003785511.1|PREDICTED: lipoma HMGIC fusion partner-like 4 protein [Otolemur garnettii] 2e-23; gi|1041088736|ref|XP_017266682.1|PREDICTED: lipoma HMGIC fusion partner-like 4 protein [Kryptolebias marmoratus] 3e-23; gi|1007771862|ref|XP_015824092.1|PREDICTED: lipoma HMGIC fusion partner-like 4 protein [Nothobranchius furzeri] 3e-23; gi|928052278|ref|XP_013875327.1|PREDICTED: lipoma HMGIC fusion partner-like 4 protein [Austrofundulus limnaeus] 3e-23; gi|558103277|ref|XP_006083960.1|PREDICTED: LOW QUALITY PROTEIN: lipoma HMGIC fusion partner-like 4 protein, partial [Myotis lucifugus] 4e-23; gi|554551364|ref|XP_005870179.1|PREDICTED: lipoma HMGIC fusion partner-like 4 protein isoform X1 [Myotis brandtii] 4e-23; gi|1158915540|ref|XP_020362856.1|lipoma HMGIC fusion partner-like 4 protein [Oncorhynchus kisutch] 6e-23;
NvERTx.4.73806 R-4 0.619011383156 E-2 0.999999999968 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.73807 R-4 0.619011383156 E-2 0.999999999968 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.59165 R-4 0.618998802101 E-6 0.999780947424 No_Uniprotmatch No_Description gi|156336172|ref|XP_001619653.1|hypothetical protein NEMVEDRAFT_v1g2507 [Nematostella vectensis], 4e-09
other nr_hits NA
NvERTx.4.70626 R-4 0.618620107753 E-6 0.999938704609 No_Uniprotmatch No_Description gi|156383590|ref|XP_001632916.1|predicted protein [Nematostella vectensis], 7e-56
other nr_hits gi|156383588|ref|XP_001632915.1|predicted protein [Nematostella vectensis] 6e-55;
NvERTx.4.70627 R-4 0.618620107753 E-6 0.999938704609 No_Uniprotmatch No_Description gi|156383590|ref|XP_001632916.1|predicted protein [Nematostella vectensis], 7e-56
other nr_hits gi|156383588|ref|XP_001632915.1|predicted protein [Nematostella vectensis] 6e-55;
NvERTx.4.46204 R-4 0.618403297213 E-1 0.990524772506 D8LR93_ECTSI Uncharacterized protein {ECO:0000313|EMBL:CBN74998.1} gi|156395436|ref|XP_001637117.1|predicted protein [Nematostella vectensis], 5e-16
other nr_hits gi|999987533|gb|KXJ26648.1|Proline-rich transmembrane protein 1 [Exaiptasia pallida] 3e-06; gi|299116888|embl|CBN74998.1|conserved unknown protein [Ectocarpus siliculosus] 1e-05;
NvERTx.4.46205 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.47282 R-4 0.618403297213 E-1 0.990524772506 A2ANU3 Synapse differentiation-inducing gene protein 1 gi|156395436|ref|XP_001637117.1|predicted protein [Nematostella vectensis], 1e-35
other nr_hits gi|299116888|embl|CBN74998.1|conserved unknown protein [Ectocarpus siliculosus] 7e-13; gi|999987533|gb|KXJ26648.1|Proline-rich transmembrane protein 1 [Exaiptasia pallida] 5e-11; gi|737948726|ref|WP_035912720.1|hypothetical protein [Knoellia sinensis] 2e-10; gi|737942228|ref|WP_035906467.1|hypothetical protein [Knoellia subterranea] 4e-10; gi|700175744|gb|KGN36604.1|membrane protein [Knoellia subterranea KCTC 19937] 4e-10; gi|828233460|ref|XP_012565782.1|PREDICTED: uncharacterized protein LOC101237102 [Hydra vulgaris] 9e-10; gi|828232387|ref|XP_012565466.1|PREDICTED: uncharacterized protein LOC105849606 isoform X1 [Hydra vulgaris] 2e-09; gi|828232389|ref|XP_012565467.1|PREDICTED: uncharacterized protein LOC105849606 isoform X2 [Hydra vulgaris] 2e-09; gi|497463373|ref|WP_009777571.1|hypothetical protein [Janibacter sp. HTCC2649] 2e-09;
NvERTx.4.82975 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82976 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82977 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82978 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82979 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description gi|156395436|ref|XP_001637117.1|predicted protein [Nematostella vectensis], 1e-08
other nr_hits NA
NvERTx.4.82980 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82981 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82982 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description gi|156395436|ref|XP_001637117.1|predicted protein [Nematostella vectensis], 1e-08
other nr_hits NA
NvERTx.4.82989 R-4 0.618403297213 E-1 0.990524772506 Q6MG82 Proline-rich transmembrane protein 1 None
other nr_hits NA
NvERTx.4.82990 R-4 0.618403297213 E-1 0.990524772506 Q6MG82 Proline-rich transmembrane protein 1 None
other nr_hits NA
NvERTx.4.82991 R-4 0.618403297213 E-1 0.990524772506 Q6MG82 Proline-rich transmembrane protein 1 None
other nr_hits NA
NvERTx.4.82992 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82994 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97977 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97978 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97979 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97980 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97981 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97982 R-4 0.618403297213 E-1 0.990524772506 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.8329 R-4 0.617521277816 E-3 0.960695753792 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.15605 R-4 0.617521277816 E-3 0.960695753792 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.81744 R-4 0.617521277816 E-3 0.960695753792 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.81753 R-4 0.617521277816 E-3 0.960695753792 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.81754 R-4 0.617521277816 E-3 0.960695753792 No_Uniprotmatch No_Description gi|156392176|ref|XP_001635925.1|predicted protein [Nematostella vectensis], 2e-62
other nr_hits gi|999971399|gb|KXJ10573.1|5'-AMP-activated protein kinase subunit gamma-2 [Exaiptasia pallida] 2e-14; gi|1005476383|ref|XP_015774951.1|PREDICTED: 5'-AMP-activated protein kinase subunit gamma-1-like [Acropora digitifera] 3e-07;
NvERTx.4.81755 R-4 0.617521277816 E-3 0.960695753792 No_Uniprotmatch No_Description gi|156392176|ref|XP_001635925.1|predicted protein [Nematostella vectensis], 2e-94
other nr_hits gi|999971399|gb|KXJ10573.1|5'-AMP-activated protein kinase subunit gamma-2 [Exaiptasia pallida] 4e-34; gi|1005476383|ref|XP_015774951.1|PREDICTED: 5'-AMP-activated protein kinase subunit gamma-1-like [Acropora digitifera] 2e-20;
NvERTx.4.81756 R-4 0.617521277816 E-3 0.960695753792 No_Uniprotmatch No_Description gi|156392176|ref|XP_001635925.1|predicted protein [Nematostella vectensis], 2e-94
other nr_hits gi|999971399|gb|KXJ10573.1|5'-AMP-activated protein kinase subunit gamma-2 [Exaiptasia pallida] 4e-34; gi|1005476383|ref|XP_015774951.1|PREDICTED: 5'-AMP-activated protein kinase subunit gamma-1-like [Acropora digitifera] 2e-20;
NvERTx.4.81757 R-4 0.617521277816 E-3 0.960695753792 No_Uniprotmatch No_Description gi|156392176|ref|XP_001635925.1|predicted protein [Nematostella vectensis], 2e-60
other nr_hits gi|999971399|gb|KXJ10573.1|5'-AMP-activated protein kinase subunit gamma-2 [Exaiptasia pallida] 2e-09;
NvERTx.4.81758 R-4 0.617521277816 E-3 0.960695753792 No_Uniprotmatch No_Description gi|156392176|ref|XP_001635925.1|predicted protein [Nematostella vectensis], 3e-92
other nr_hits gi|999971399|gb|KXJ10573.1|5'-AMP-activated protein kinase subunit gamma-2 [Exaiptasia pallida] 4e-29; gi|1005476383|ref|XP_015774951.1|PREDICTED: 5'-AMP-activated protein kinase subunit gamma-1-like [Acropora digitifera] 2e-17;
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