#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.7662 R-4 0.662063695097 E-8 0.830426345646 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154578 R-4 0.662063695097 E-8 0.830426345646 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113050 R-4 0.661597256985 E-3 0.971090795224 O46651 CD166 antigen None
other nr_hits NA
NvERTx.4.133348 R-4 0.661491696124 E-8 0.999999998318 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159501 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160519 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160520 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160521 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160522 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160523 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160524 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160525 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160527 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160528 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156382063|ref|XP_001632374.1|predicted protein [Nematostella vectensis], 3e-47
other nr_hits gi|999987876|gb|KXJ26983.1|Melanopsin-B [Exaiptasia pallida] 7e-27; gi|1005441981|ref|XP_015758319.1|PREDICTED: uncharacterized protein LOC107337624 isoform X1 [Acropora digitifera] 1e-12; gi|1005441985|ref|XP_015758321.1|PREDICTED: uncharacterized protein LOC107337624 isoform X2 [Acropora digitifera] 1e-12; gi|1005441989|ref|XP_015758323.1|PREDICTED: uncharacterized protein LOC107337624 isoform X3 [Acropora digitifera] 1e-12; gi|1005441991|ref|XP_015758324.1|PREDICTED: uncharacterized protein LOC107337624 isoform X4 [Acropora digitifera] 1e-12;
NvERTx.4.160529 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156382063|ref|XP_001632374.1|predicted protein [Nematostella vectensis], 9e-70
other nr_hits gi|999987876|gb|KXJ26983.1|Melanopsin-B [Exaiptasia pallida] 4e-37; gi|1005441981|ref|XP_015758319.1|PREDICTED: uncharacterized protein LOC107337624 isoform X1 [Acropora digitifera] 2e-17; gi|1005441985|ref|XP_015758321.1|PREDICTED: uncharacterized protein LOC107337624 isoform X2 [Acropora digitifera] 2e-17; gi|1005441989|ref|XP_015758323.1|PREDICTED: uncharacterized protein LOC107337624 isoform X3 [Acropora digitifera] 2e-17; gi|1005441991|ref|XP_015758324.1|PREDICTED: uncharacterized protein LOC107337624 isoform X4 [Acropora digitifera] 2e-17;
NvERTx.4.160530 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156382063|ref|XP_001632374.1|predicted protein [Nematostella vectensis], 4e-32
other nr_hits gi|999987876|gb|KXJ26983.1|Melanopsin-B [Exaiptasia pallida] 4e-15;
NvERTx.4.160531 R-4 0.661135941392 E-4 0.99999999992 Q5REI9 Tumor protein p53-inducible protein 11 gi|156382063|ref|XP_001632374.1|predicted protein [Nematostella vectensis], 4e-49
other nr_hits gi|999987876|gb|KXJ26983.1|Melanopsin-B [Exaiptasia pallida] 1e-27; gi|1005441981|ref|XP_015758319.1|PREDICTED: uncharacterized protein LOC107337624 isoform X1 [Acropora digitifera] 3e-20; gi|1005441985|ref|XP_015758321.1|PREDICTED: uncharacterized protein LOC107337624 isoform X2 [Acropora digitifera] 3e-20; gi|1005441989|ref|XP_015758323.1|PREDICTED: uncharacterized protein LOC107337624 isoform X3 [Acropora digitifera] 3e-20; gi|1005441991|ref|XP_015758324.1|PREDICTED: uncharacterized protein LOC107337624 isoform X4 [Acropora digitifera] 3e-20; gi|148231055|ref|NP_001090020.1|uncharacterized protein LOC735092 [Xenopus laevis] 4e-06; gi|958766674|ref|XP_014716742.1|PREDICTED: tumor protein p53-inducible protein 11 [Equus asinus] 6e-06; gi|1012131118|ref|XP_016002310.1|PREDICTED: tumor protein p53-inducible protein 11 [Rousettus aegyptiacus] 8e-06; gi|149725039|ref|XP_001489018.1|PREDICTED: tumor protein p53-inducible protein 11 [Equus caballus] 8e-06;
NvERTx.4.84772 R-4 0.660858388542 E-4 0.990442377774 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84774 R-4 0.660858388542 E-4 0.990442377774 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140414 R-4 0.660858388542 E-4 0.990442377774 No_Uniprotmatch No_Description gi|156349442|ref|XP_001622060.1|predicted protein [Nematostella vectensis], 9e-17
other nr_hits NA
NvERTx.4.103128 R-4 0.66077804975 E-3 0.999518939704 P24507 Synaptotagmin-C gi|156374424|ref|XP_001629807.1|predicted protein [Nematostella vectensis], 1e-149
other nr_hits gi|999987266|gb|KXJ26385.1|Synaptotagmin-C [Exaiptasia pallida] 1e-77; gi|1005446831|ref|XP_015760703.1|PREDICTED: synaptotagmin-7-like [Acropora digitifera] 1e-53; gi|999965638|gb|KXJ04816.1|Synaptotagmin-C, partial [Exaiptasia pallida] 2e-51; gi|156356261|ref|XP_001623846.1|predicted protein [Nematostella vectensis] 1e-34; gi|135084|sp|SY63_DIPOM|P24507.1|RecName: Full=Synaptotagmin-C; AltName: Full=Synaptic vesicle protein O-p65-C >AAA49229.1 synaptic vesicle protein [Diplobatis ommata] 1e-32; gi|443688766|gb|ELT91365.1|synaptotagmin 7 [Capitella teleta] 3e-32; gi|1036924228|ref|XP_017154832.1|PREDICTED: synaptotagmin 1 isoform X3 [Drosophila miranda] 4e-32; gi|125984480|ref|XP_001356004.1|uncharacterized protein Dpse_GA16224 [Drosophila pseudoobscura pseudoobscura] 5e-32; gi|1148999341|gb|AQS79246.1|synaptotagmin/HALO7 [synthetic construct] 9e-32;
NvERTx.4.103130 R-4 0.66077804975 E-3 0.999518939704 P24507 Synaptotagmin-C gi|156374424|ref|XP_001629807.1|predicted protein [Nematostella vectensis], 1e-149
other nr_hits gi|999987266|gb|KXJ26385.1|Synaptotagmin-C [Exaiptasia pallida] 1e-77; gi|1005446831|ref|XP_015760703.1|PREDICTED: synaptotagmin-7-like [Acropora digitifera] 1e-53; gi|999965638|gb|KXJ04816.1|Synaptotagmin-C, partial [Exaiptasia pallida] 2e-51; gi|156356261|ref|XP_001623846.1|predicted protein [Nematostella vectensis] 1e-34; gi|135084|sp|SY63_DIPOM|P24507.1|RecName: Full=Synaptotagmin-C; AltName: Full=Synaptic vesicle protein O-p65-C >AAA49229.1 synaptic vesicle protein [Diplobatis ommata] 1e-32; gi|443688766|gb|ELT91365.1|synaptotagmin 7 [Capitella teleta] 3e-32; gi|1036924228|ref|XP_017154832.1|PREDICTED: synaptotagmin 1 isoform X3 [Drosophila miranda] 4e-32; gi|125984480|ref|XP_001356004.1|uncharacterized protein Dpse_GA16224 [Drosophila pseudoobscura pseudoobscura] 5e-32; gi|1148999341|gb|AQS79246.1|synaptotagmin/HALO7 [synthetic construct] 9e-32;
NvERTx.4.231336 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105875 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.108797 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116332 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116336 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116327 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116328 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116329 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.128920 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.128921 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147279 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149386 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180934 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198669 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198677 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198681 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198684 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204984 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.205290 R-4 0.659407372772 E-4 0.987671668283 A0A1S3HZY3_LINUN uncharacterized protein LOC106159397 {ECO:0000313|RefSeq:XP_013391131.1} gi|156369577|ref|XP_001628052.1|predicted protein [Nematostella vectensis], 1e-181
other nr_hits gi|999989063|gb|KXJ28115.1|hypothetical protein AC249_AIPGENE1833 [Exaiptasia pallida] 4e-142; gi|156389736|ref|XP_001635146.1|predicted protein [Nematostella vectensis] 8e-122; gi|999989031|gb|KXJ28095.1|hypothetical protein AC249_AIPGENE21772 [Exaiptasia pallida] 4e-109; gi|1005480298|ref|XP_015776883.1|PREDICTED: uncharacterized protein LOC107354905 [Acropora digitifera] 8e-101; gi|1005469918|ref|XP_015771842.1|PREDICTED: uncharacterized protein LOC107350131 [Acropora digitifera] 2e-73; gi|999972969|gb|KXJ12143.1|hypothetical protein AC249_AIPGENE28620 [Exaiptasia pallida] 2e-68; gi|156355394|ref|XP_001623653.1|predicted protein [Nematostella vectensis] 6e-66; gi|156381360|ref|XP_001632233.1|predicted protein [Nematostella vectensis] 2e-64; gi|999990213|gb|KXJ29241.1|hypothetical protein AC249_AIPGENE17061 [Exaiptasia pallida] 6e-40;
NvERTx.4.206259 R-4 0.659407372772 E-4 0.987671668283 U9TW04_RHIID Uncharacterized protein {ECO:0000313|EMBL:ESA12300.1} gi|156389736|ref|XP_001635146.1|predicted protein [Nematostella vectensis], 1e-96
other nr_hits gi|156369577|ref|XP_001628052.1|predicted protein [Nematostella vectensis] 1e-95; gi|999989063|gb|KXJ28115.1|hypothetical protein AC249_AIPGENE1833 [Exaiptasia pallida] 1e-93; gi|156381360|ref|XP_001632233.1|predicted protein [Nematostella vectensis] 5e-71; gi|1005480298|ref|XP_015776883.1|PREDICTED: uncharacterized protein LOC107354905 [Acropora digitifera] 5e-70; gi|999972969|gb|KXJ12143.1|hypothetical protein AC249_AIPGENE28620 [Exaiptasia pallida] 1e-68; gi|999989031|gb|KXJ28095.1|hypothetical protein AC249_AIPGENE21772 [Exaiptasia pallida] 2e-67; gi|1005469918|ref|XP_015771842.1|PREDICTED: uncharacterized protein LOC107350131 [Acropora digitifera] 3e-42; gi|1005472929|ref|XP_015773321.1|PREDICTED: uncharacterized protein LOC107351543 isoform X1 [Acropora digitifera] 1e-35; gi|1005472931|ref|XP_015773322.1|PREDICTED: uncharacterized protein LOC107351543 isoform X2 [Acropora digitifera] 1e-35;
NvERTx.4.206098 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.206101 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.206105 R-4 0.659407372772 E-4 0.987671668283 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179735 R-4 0.658748391785 E-8 0.999999999972 P98073 Enteropeptidase gi|156393310|ref|XP_001636271.1|predicted protein [Nematostella vectensis], 2e-28
other nr_hits gi|999980500|gb|KXJ19674.1|Chymotrypsin B [Exaiptasia pallida] 1e-18; gi|999980492|gb|KXJ19666.1|Transmembrane protease serine 9 [Exaiptasia pallida] 6e-18; gi|156393308|ref|XP_001636270.1|predicted protein [Nematostella vectensis] 2e-17; gi|156365882|ref|XP_001626871.1|predicted protein [Nematostella vectensis] 2e-16; gi|999980499|gb|KXJ19673.1|Chymotrypsin-like protease CTRL-1 [Exaiptasia pallida] 5e-16; gi|999977161|gb|KXJ16335.1|Transmembrane protease serine 9 [Exaiptasia pallida] 6e-15; gi|999970633|gb|KXJ09807.1|Chymotrypsinogen B [Exaiptasia pallida] 1e-13; gi|1005428397|ref|XP_015751924.1|PREDICTED: chymotrypsinogen B-like isoform X1 [Acropora digitifera] 2e-13; gi|1005428399|ref|XP_015751925.1|PREDICTED: chymotrypsinogen B-like isoform X2 [Acropora digitifera] 2e-13;
NvERTx.4.69998 R-4 0.657931382216 E-6 0.998377233474 Q642H2 cAMP-responsive element-binding protein-like 2 gi|156398681|ref|XP_001638316.1|predicted protein [Nematostella vectensis], 5e-32
other nr_hits gi|999977991|gb|KXJ17165.1|cAMP-responsive element-binding protein-like 2 [Exaiptasia pallida] 8e-28; gi|291233021|ref|XP_002736447.1|PREDICTED: cAMP-responsive element-binding protein-like 2-like [Saccoglossus kowalevskii] 7e-21; gi|148539951|ref|NP_001002702.2|cAMP-responsive element-binding protein-like 2 [Danio rerio] 4e-20; gi|1025245148|ref|XP_016367596.1|PREDICTED: cAMP-responsive element-binding protein-like 2 isoform X1 [Sinocyclocheilus rhinocerous] 6e-20; gi|1024964189|ref|XP_016303240.1|PREDICTED: cAMP-responsive element-binding protein-like 2 isoform X2 [Sinocyclocheilus anshuiensis] 6e-20; gi|1143424770|ref|XP_019966589.1|PREDICTED: cAMP-responsive element-binding protein-like 2 isoform X1 [Paralichthys olivaceus] 8e-20; gi|928081287|ref|XP_013855466.1|PREDICTED: cAMP-responsive element-binding protein-like 2 [Austrofundulus limnaeus] 8e-20; gi|808868796|gb|KKF19043.1|cAMP-responsive element-binding protein-like 2 [Larimichthys crocea] 8e-20; gi|1108988065|ref|XP_019126757.1|PREDICTED: cAMP-responsive element-binding protein-like 2 [Larimichthys crocea] 8e-20;
NvERTx.4.69999 R-4 0.657931382216 E-6 0.998377233474 Q642H2 cAMP-responsive element-binding protein-like 2 gi|999977991|gb|KXJ17165.1|cAMP-responsive element-binding protein-like 2 [Exaiptasia pallida], 3e-28
other nr_hits gi|156398681|ref|XP_001638316.1|predicted protein [Nematostella vectensis] 3e-22; gi|966652198|gb|KTF87100.1|hypothetical protein cypCar_00036625 [Cyprinus carpio] 1e-14; gi|1020523217|ref|XP_016101102.1|PREDICTED: cAMP-responsive element-binding protein-like 2 [Sinocyclocheilus grahami] 2e-14; gi|291233021|ref|XP_002736447.1|PREDICTED: cAMP-responsive element-binding protein-like 2-like [Saccoglossus kowalevskii] 2e-14; gi|148539951|ref|NP_001002702.2|cAMP-responsive element-binding protein-like 2 [Danio rerio] 3e-14; gi|1025245148|ref|XP_016367596.1|PREDICTED: cAMP-responsive element-binding protein-like 2 isoform X1 [Sinocyclocheilus rhinocerous] 4e-14; gi|1024964189|ref|XP_016303240.1|PREDICTED: cAMP-responsive element-binding protein-like 2 isoform X2 [Sinocyclocheilus anshuiensis] 4e-14; gi|1072264274|ref|XP_018417594.1|PREDICTED: cAMP-responsive element-binding protein-like 2 [Nanorana parkeri] 5e-14; gi|505834241|ref|XP_004611435.1|PREDICTED: cAMP-responsive element-binding protein-like 2 [Sorex araneus] 5e-14;
NvERTx.4.139579 R-4 0.657709861356 E-6 0.999999999994 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139582 R-4 0.657709861356 E-6 0.999999999994 No_Uniprotmatch No_Description None
other nr_hits NA
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