#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.57857 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.70808 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.70814 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94295 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94296 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94297 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97696 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.104072 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.104073 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106368 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106369 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106371 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.109869 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.109871 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.109872 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112548 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.120308 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description gi|999969749|gb|KXJ08923.1|hypothetical protein AC249_AIPGENE15249 [Exaiptasia pallida], 4e-13
other nr_hits gi|999987820|gb|KXJ26929.1|ATP-dependent DNA helicase PIF1 [Exaiptasia pallida] 1e-11;
NvERTx.4.122615 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123548 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124229 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124230 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.128637 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.138638 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.138640 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.138643 R-4 0.860155078897 E-4 0.541316543006 W4ZA77_STRPU Uncharacterized protein {ECO:0000313|EnsemblMetazoa:SPU_025054-tr} gi|999981331|gb|KXJ20505.1|putative RNA-directed DNA polymerase from transposon BS [Exaiptasia pallida], 5e-72
other nr_hits gi|780103793|ref|XP_011675592.1|PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Strongylocentrotus purpuratus] 7e-42; gi|780080917|ref|XP_011672781.1|PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Strongylocentrotus purpuratus] 9e-42; gi|780045179|ref|XP_011668722.1|PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Strongylocentrotus purpuratus] 8e-41; gi|780064403|ref|XP_011670815.1|PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like, partial [Strongylocentrotus purpuratus] 3e-40; gi|999965942|gb|KXJ05120.1|putative RNA-directed DNA polymerase from transposon BS, partial [Exaiptasia pallida] 3e-36; gi|1126226182|ref|XP_019647516.1|PREDICTED: uncharacterized protein LOC109487856 [Branchiostoma belcheri] 2e-32; gi|780161103|ref|XP_011683098.1|PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Strongylocentrotus purpuratus] 6e-32; gi|1005489852|ref|XP_015747640.1|PREDICTED: uncharacterized protein LOC107327415 [Acropora digitifera] 1e-31; gi|17529698|gb|AF369891_4|AAL40415.1|endonuclease/reverse transcriptase [Branchiostoma floridae] 1e-30;
NvERTx.4.138645 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139764 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139765 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139766 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140403 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140406 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140407 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140515 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140590 R-4 0.860155078897 E-4 0.541316543006 Q2TBV1 Replication factor C subunit 3 None
other nr_hits NA
NvERTx.4.140593 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142138 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146098 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.150209 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159092 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159096 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159098 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.163330 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165763 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193913 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.195733 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.195726 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.195729 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.195730 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.195727 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.195728 R-4 0.860155078897 E-4 0.541316543006 No_Uniprotmatch No_Description None
other nr_hits NA
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