#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.172878 R-4 0.863630407807 E-6 0.999999999915 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.172879 R-4 0.863630407807 E-6 0.999999999915 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181885 R-4 0.863630407807 E-6 0.999999999915 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181886 R-4 0.863630407807 E-6 0.999999999915 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113073 R-4 0.863581750463 E-8 0.999997423602 P07207 Neurogenic locus Notch protein gi|156356147|ref|XP_001623791.1|predicted protein [Nematostella vectensis], 6e-78
other nr_hits gi|156356143|ref|XP_001623789.1|predicted protein [Nematostella vectensis] 8e-65; gi|156356161|ref|XP_001623798.1|predicted protein [Nematostella vectensis] 4e-48; gi|919057069|ref|XP_013410358.1|PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like, partial [Lingula anatina] 7e-43; gi|663272803|ref|XP_008495516.1|PREDICTED: neurogenic locus notch homolog protein 1 [Calypte anna] 1e-42; gi|704185335|ref|XP_010136850.1|PREDICTED: neurogenic locus notch homolog protein 1, partial [Buceros rhinoceros silvestris] 2e-42; gi|780169303|ref|XP_011684226.1|PREDICTED: fibropellin-1 isoform X1 [Strongylocentrotus purpuratus] 2e-42; gi|780169308|ref|XP_011684227.1|PREDICTED: fibropellin-1 isoform X2 [Strongylocentrotus purpuratus] 2e-42; gi|780169313|ref|XP_011684228.1|PREDICTED: fibropellin-1 isoform X3 [Strongylocentrotus purpuratus] 2e-42; gi|926504618|ref|XP_013801142.1|PREDICTED: neurogenic locus notch homolog protein 1, partial [Apteryx australis mantelli] 3e-42;
NvERTx.4.113074 R-4 0.863581750463 E-8 0.999997423602 P07207 Neurogenic locus Notch protein gi|156356147|ref|XP_001623791.1|predicted protein [Nematostella vectensis], 3e-71
other nr_hits gi|156356143|ref|XP_001623789.1|predicted protein [Nematostella vectensis] 8e-65; gi|156356161|ref|XP_001623798.1|predicted protein [Nematostella vectensis] 4e-48; gi|919057069|ref|XP_013410358.1|PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like, partial [Lingula anatina] 7e-43; gi|663272803|ref|XP_008495516.1|PREDICTED: neurogenic locus notch homolog protein 1 [Calypte anna] 1e-42; gi|704185335|ref|XP_010136850.1|PREDICTED: neurogenic locus notch homolog protein 1, partial [Buceros rhinoceros silvestris] 2e-42; gi|780169303|ref|XP_011684226.1|PREDICTED: fibropellin-1 isoform X1 [Strongylocentrotus purpuratus] 2e-42; gi|780169308|ref|XP_011684227.1|PREDICTED: fibropellin-1 isoform X2 [Strongylocentrotus purpuratus] 2e-42; gi|780169313|ref|XP_011684228.1|PREDICTED: fibropellin-1 isoform X3 [Strongylocentrotus purpuratus] 2e-42; gi|926504618|ref|XP_013801142.1|PREDICTED: neurogenic locus notch homolog protein 1, partial [Apteryx australis mantelli] 3e-42;
NvERTx.4.17614 R-4 0.863224010047 E-3 0.995365758032 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.17615 R-4 0.863224010047 E-3 0.995365758032 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.43353 R-4 0.863224010047 E-3 0.995365758032 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.43354 R-4 0.863224010047 E-3 0.995365758032 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.43355 R-4 0.863224010047 E-3 0.995365758032 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71074 R-4 0.863224010047 E-3 0.995365758032 Q9ZQ47 Glycine-rich domain-containing protein 1 {ECO:0000303|Ref.4} gi|156398843|ref|XP_001638397.1|predicted protein [Nematostella vectensis], 2e-114
other nr_hits gi|999974514|gb|KXJ13688.1|Glycine-rich domain-containing protein 2 [Exaiptasia pallida] 9e-104; gi|1005429714|ref|XP_015752597.1|PREDICTED: uncharacterized protein LOC107332378 isoform X1 [Acropora digitifera] 9e-77; gi|1005429716|ref|XP_015752598.1|PREDICTED: uncharacterized protein LOC107332378 isoform X2 [Acropora digitifera] 1e-75; gi|1126204766|ref|XP_019635883.1|PREDICTED: uncharacterized protein LOC109478658 [Branchiostoma belcheri] 1e-68; gi|676467757|ref|XP_009057991.1|hypothetical protein LOTGIDRAFT_153725 [Lottia gigantea] 6e-65; gi|676467748|ref|XP_009057988.1|hypothetical protein LOTGIDRAFT_153720 [Lottia gigantea] 6e-60; gi|961142400|ref|XP_014789934.1|PREDICTED: uncharacterized protein LOC106883437 [Octopus bimaculoides] 2e-58; gi|918278153|gb|KOF62913.1|hypothetical protein OCBIM_22021341mg [Octopus bimaculoides] 2e-58; gi|762078061|ref|XP_011451985.1|PREDICTED: uncharacterized protein LOC105345523 [Crassostrea gigas] 9e-58;
NvERTx.4.71075 R-4 0.863224010047 E-3 0.995365758032 Q9ZQ47 Glycine-rich domain-containing protein 1 {ECO:0000303|Ref.4} gi|156398843|ref|XP_001638397.1|predicted protein [Nematostella vectensis], 3e-114
other nr_hits gi|999974514|gb|KXJ13688.1|Glycine-rich domain-containing protein 2 [Exaiptasia pallida] 9e-104; gi|1005429714|ref|XP_015752597.1|PREDICTED: uncharacterized protein LOC107332378 isoform X1 [Acropora digitifera] 1e-76; gi|1005429716|ref|XP_015752598.1|PREDICTED: uncharacterized protein LOC107332378 isoform X2 [Acropora digitifera] 1e-75; gi|1126204766|ref|XP_019635883.1|PREDICTED: uncharacterized protein LOC109478658 [Branchiostoma belcheri] 1e-68; gi|676467757|ref|XP_009057991.1|hypothetical protein LOTGIDRAFT_153725 [Lottia gigantea] 7e-65; gi|676467748|ref|XP_009057988.1|hypothetical protein LOTGIDRAFT_153720 [Lottia gigantea] 6e-60; gi|961142400|ref|XP_014789934.1|PREDICTED: uncharacterized protein LOC106883437 [Octopus bimaculoides] 2e-58; gi|918278153|gb|KOF62913.1|hypothetical protein OCBIM_22021341mg [Octopus bimaculoides] 2e-58; gi|762078061|ref|XP_011451985.1|PREDICTED: uncharacterized protein LOC105345523 [Crassostrea gigas] 1e-57;
NvERTx.4.118630 R-4 0.863224010047 E-3 0.995365758032 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.220352 R-4 0.863224010047 E-3 0.995365758032 V4A3I0_LOTGI Uncharacterized protein {ECO:0000313|EMBL:ESO91292.1} gi|999974514|gb|KXJ13688.1|Glycine-rich domain-containing protein 2 [Exaiptasia pallida], 2e-13
other nr_hits gi|156398843|ref|XP_001638397.1|predicted protein [Nematostella vectensis] 8e-12; gi|676467757|ref|XP_009057991.1|hypothetical protein LOTGIDRAFT_153725 [Lottia gigantea] 1e-11; gi|1126204766|ref|XP_019635883.1|PREDICTED: uncharacterized protein LOC109478658 [Branchiostoma belcheri] 1e-09; gi|1139748603|ref|XP_019919533.1|PREDICTED: uncharacterized protein LOC105320194 [Crassostrea gigas] 2e-08; gi|405958799|gb|EKC24891.1|hypothetical protein CGI_10021490 [Crassostrea gigas] 2e-08; gi|908477995|ref|XP_013090925.1|PREDICTED: glycine-rich domain-containing protein 2-like [Biomphalaria glabrata] 2e-07; gi|762078061|ref|XP_011451985.1|PREDICTED: uncharacterized protein LOC105345523 [Crassostrea gigas] 2e-07; gi|405954082|gb|EKC21614.1|hypothetical protein CGI_10003620 [Crassostrea gigas] 2e-07; gi|1005429714|ref|XP_015752597.1|PREDICTED: uncharacterized protein LOC107332378 isoform X1 [Acropora digitifera] 6e-07;
NvERTx.4.60680 R-4 0.863027238539 E-8 0.999999998616 Q60997 Deleted in malignant brain tumors 1 protein gi|156330257|ref|XP_001619080.1|hypothetical protein NEMVEDRAFT_v1g152446 [Nematostella vectensis], 7e-61
other nr_hits gi|156380637|ref|XP_001631874.1|predicted protein [Nematostella vectensis] 1e-60; gi|1126176213|ref|XP_019620366.1|PREDICTED: oncoprotein-induced transcript 3 protein-like, partial [Branchiostoma belcheri] 2e-42; gi|1126185678|ref|XP_019625517.1|PREDICTED: LOW QUALITY PROTEIN: deleted in malignant brain tumors 1 protein-like [Branchiostoma belcheri] 2e-40; gi|683454458|gb|KFZ50370.1|Deleted in malignant brain tumors 1 protein, partial [Podiceps cristatus] 3e-40; gi|1018967619|ref|XP_016082600.1|PREDICTED: LOW QUALITY PROTEIN: deleted in malignant brain tumors 1 protein-like [Ornithorhynchus anatinus] 5e-40; gi|946610385|ref|XP_014428932.1|PREDICTED: deleted in malignant brain tumors 1 protein-like [Pelodiscus sinensis] 1e-39; gi|260785086|ref|XP_002587594.1|hypothetical protein BRAFLDRAFT_230523 [Branchiostoma floridae] 2e-39; gi|483510374|gb|EOA99650.1|Deleted in malignant brain tumors 1 protein, partial [Anas platyrhynchos] 2e-39; gi|874480092|ref|XP_012957201.1|PREDICTED: LOW QUALITY PROTEIN: deleted in malignant brain tumors 1 protein-like [Anas platyrhynchos] 3e-39;
NvERTx.4.79176 R-4 0.862931940511 E-8 0.989606352457 Q5PPM0 Intelectin-1 gi|156395577|ref|XP_001637187.1|predicted protein [Nematostella vectensis], 2e-130
other nr_hits gi|999977403|gb|KXJ16577.1|hypothetical protein AC249_AIPGENE27185 [Exaiptasia pallida] 2e-45; gi|999983440|gb|KXJ22581.1|Neurogenic locus notch-like protein 4 [Exaiptasia pallida] 7e-44; gi|1005422262|ref|XP_015765821.1|PREDICTED: uncharacterized protein LOC107344641 isoform X1 [Acropora digitifera] 3e-43; gi|1005422265|ref|XP_015765828.1|PREDICTED: uncharacterized protein LOC107344641 isoform X2 [Acropora digitifera] 3e-43; gi|999979217|gb|KXJ18391.1|Sperm receptor for egg jelly [Exaiptasia pallida] 2e-41; gi|999981385|gb|KXJ20559.1|Intelectin-1a [Exaiptasia pallida] 6e-40; gi|1005469847|ref|XP_015771807.1|PREDICTED: uncharacterized protein LOC107350098 [Acropora digitifera] 4e-39; gi|999968479|gb|KXJ07653.1|N-alpha-acetyltransferase 40 [Exaiptasia pallida] 3e-38; gi|1005455105|ref|XP_015764689.1|PREDICTED: uncharacterized protein LOC107343626 [Acropora digitifera] 6e-38;
NvERTx.4.79177 R-4 0.862931940511 E-8 0.989606352457 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142192 R-4 0.862931940511 E-8 0.989606352457 No_Uniprotmatch No_Description gi|156395577|ref|XP_001637187.1|predicted protein [Nematostella vectensis], 9e-43
other nr_hits NA
NvERTx.4.34640 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description gi|1126224841|ref|XP_019646796.1|PREDICTED: uncharacterized protein LOC109487258 [Branchiostoma belcheri], 4e-07
other nr_hits gi|1005447803|ref|XP_015761185.1|PREDICTED: uncharacterized protein LOC107340343 [Acropora digitifera] 8e-07;
NvERTx.4.38036 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.77982 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.88544 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90736 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100812 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100818 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description gi|156392791|ref|XP_001636231.1|predicted protein [Nematostella vectensis], 3e-09
other nr_hits NA
NvERTx.4.100819 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100821 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100822 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102480 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103900 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.127703 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139679 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139680 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139683 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139684 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154178 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description gi|156401131|ref|XP_001639145.1|predicted protein [Nematostella vectensis], 5e-13
other nr_hits gi|156370301|ref|XP_001628409.1|predicted protein [Nematostella vectensis] 2e-06;
NvERTx.4.158865 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159869 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159870 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161411 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161412 R-4 0.862237374087 E-5 0.999996392605 Q9JHZ4 GRIP1-associated protein 1 gi|999971372|gb|KXJ10546.1|GRIP1-associated protein 1 [Exaiptasia pallida], 2e-178
other nr_hits gi|1005446300|ref|XP_015760448.1|PREDICTED: GRIP1-associated protein 1-like [Acropora digitifera] 3e-130; gi|390351488|ref|XP_787296.3|PREDICTED: GRIP1-associated protein 1 isoform X1 [Strongylocentrotus purpuratus] 4e-123; gi|390351486|ref|XP_003727673.1|PREDICTED: GRIP1-associated protein 1 isoform X2 [Strongylocentrotus purpuratus] 9e-121; gi|585699600|ref|XP_006812622.1|PREDICTED: GRIP1-associated protein 1-like [Saccoglossus kowalevskii] 5e-116; gi|1126161068|ref|XP_019628230.1|PREDICTED: LOW QUALITY PROTEIN: GRIP1-associated protein 1-like [Branchiostoma belcheri] 1e-114; gi|1049282131|ref|XP_017537440.1|PREDICTED: GRIP1-associated protein 1 isoform X1 [Pygocentrus nattereri] 3e-111; gi|929250243|ref|XP_014001339.1|PREDICTED: GRIP1-associated protein 1-like isoform X2 [Salmo salar] 3e-108; gi|1049282133|ref|XP_017537441.1|PREDICTED: GRIP1-associated protein 1 isoform X2 [Pygocentrus nattereri] 1e-107; gi|929250241|ref|XP_014001337.1|PREDICTED: GRIP1-associated protein 1-like isoform X1 [Salmo salar] 1e-107;
NvERTx.4.161413 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161415 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162287 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162288 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169634 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170481 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171520 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171521 R-4 0.862237374087 E-5 0.999996392605 No_Uniprotmatch No_Description None
other nr_hits NA
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