#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

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Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.151156 R-4 0.887997230715 E-2 0.999963357545 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.151157 R-4 0.887997230715 E-2 0.999963357545 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.151159 R-4 0.887997230715 E-2 0.999963357545 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.151162 R-4 0.887997230715 E-2 0.999963357545 Q9BEA9 Glutathione S-transferase Mu 3 gi|156388328|ref|XP_001634653.1|predicted protein [Nematostella vectensis], 1e-68
other nr_hits gi|961837726|ref|XP_014886461.1|PREDICTED: glutathione S-transferase Mu 3-like isoform X2 [Poecilia latipinna] 1e-39; gi|617457993|ref|XP_007570972.1|PREDICTED: glutathione S-transferase Mu 3-like isoform X2 [Poecilia formosa] 1e-39; gi|1039403234|ref|XP_008411538.2|PREDICTED: glutathione S-transferase Mu 3-like [Poecilia reticulata] 2e-39; gi|961854435|ref|XP_014843859.1|PREDICTED: glutathione S-transferase Mu 3-like [Poecilia mexicana] 6e-39; gi|941785824|ref|XP_014325147.1|PREDICTED: glutathione S-transferase Mu 3-like [Xiphophorus maculatus] 6e-39; gi|218455237|gb|ACK77301.1|glutathione S-transferase, partial [Oreochromis niloticus] 4e-38; gi|348514674|ref|XP_003444865.1|PREDICTED: glutathione S-transferase Mu 3 [Oreochromis niloticus] 4e-38; gi|974078286|ref|XP_015236784.1|PREDICTED: glutathione S-transferase Mu 3-like [Cyprinodon variegatus] 9e-38; gi|158534053|ref|NP_001103586.1|glutathione S-transferase mu 3 [Danio rerio] 9e-38;
NvERTx.4.151163 R-4 0.887997230715 E-2 0.999963357545 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.151164 R-4 0.887997230715 E-2 0.999963357545 P04905 Glutathione S-transferase Mu 1 gi|156388328|ref|XP_001634653.1|predicted protein [Nematostella vectensis], 6e-121
other nr_hits gi|260796361|ref|XP_002593173.1|hypothetical protein BRAFLDRAFT_72748 [Branchiostoma floridae] 3e-70; gi|348514674|ref|XP_003444865.1|PREDICTED: glutathione S-transferase Mu 3 [Oreochromis niloticus] 3e-69; gi|498998680|ref|XP_004554297.1|PREDICTED: glutathione S-transferase Mu 3-like [Maylandia zebra] 5e-69; gi|941785824|ref|XP_014325147.1|PREDICTED: glutathione S-transferase Mu 3-like [Xiphophorus maculatus] 9e-69; gi|1126219556|ref|XP_019643930.1|PREDICTED: glutathione S-transferase Mu 5-like isoform X1 [Branchiostoma belcheri] 2e-68; gi|583980610|ref|XP_006785619.1|PREDICTED: glutathione S-transferase Mu 3-like [Neolamprologus brichardi] 3e-68; gi|156401515|ref|XP_001639336.1|predicted protein [Nematostella vectensis] 6e-68; gi|617457993|ref|XP_007570972.1|PREDICTED: glutathione S-transferase Mu 3-like isoform X2 [Poecilia formosa] 6e-68; gi|548373380|ref|XP_005732912.1|PREDICTED: glutathione S-transferase Mu 3-like [Pundamilia nyererei] 6e-68;
NvERTx.4.183469 R-4 0.887997230715 E-2 0.999963357545 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192060 R-4 0.887997230715 E-2 0.999963357545 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.57832 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71840 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.117598 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 5e-16
other nr_hits NA
NvERTx.4.117599 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 9e-29
other nr_hits NA
NvERTx.4.117600 R-4 0.88795714646 E-4 0.999076823772 W4Y9L5_STRPU Uncharacterized protein {ECO:0000313|EnsemblMetazoa:SPU_012428-tr} gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 6e-32
other nr_hits gi|1005425620|ref|XP_015747850.1|PREDICTED: uncharacterized protein LOC107327618 [Acropora digitifera] 5e-06; gi|780036586|ref|XP_011667483.1|PREDICTED: uncharacterized protein LOC105439791 [Strongylocentrotus purpuratus] 3e-05;
NvERTx.4.126655 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126659 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126663 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126660 R-4 0.88795714646 E-4 0.999076823772 C3ZYH4_BRAFL Putative uncharacterized protein {ECO:0000313|EMBL:EEN42396.1} gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 1e-45
other nr_hits gi|1126168229|ref|XP_019616014.1|PREDICTED: uncharacterized protein LOC109463602 [Branchiostoma belcheri] 1e-15; gi|260782625|ref|XP_002586385.1|hypothetical protein BRAFLDRAFT_108529 [Branchiostoma floridae] 3e-12; gi|1126165232|ref|XP_019614385.1|PREDICTED: uncharacterized protein LOC109462296 [Branchiostoma belcheri] 8e-12; gi|1058260056|gb|JAT33513.1|hypothetical protein g.35742, partial [Graphocephala atropunctata] 9e-10; gi|999968127|gb|KXJ07301.1|hypothetical protein AC249_AIPGENE744 [Exaiptasia pallida] 1e-09; gi|999968946|gb|KXJ08120.1|hypothetical protein AC249_AIPGENE24817, partial [Exaiptasia pallida] 1e-09; gi|1073701493|gb|JAT93803.1|putative catalytic giy-yig endonuclease domain of penelope-like elements, partial [Amblyomma aureolatum] 5e-09; gi|1050382093|gb|OCT84288.1|hypothetical protein XELAEV_18022446mg [Xenopus laevis] 8e-09; gi|260791303|ref|XP_002590679.1|hypothetical protein BRAFLDRAFT_89480 [Branchiostoma floridae] 8e-09;
NvERTx.4.126661 R-4 0.88795714646 E-4 0.999076823772 C3ZYH4_BRAFL Putative uncharacterized protein {ECO:0000313|EMBL:EEN42396.1} gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 4e-55
other nr_hits gi|1126168229|ref|XP_019616014.1|PREDICTED: uncharacterized protein LOC109463602 [Branchiostoma belcheri] 6e-18; gi|1126165232|ref|XP_019614385.1|PREDICTED: uncharacterized protein LOC109462296 [Branchiostoma belcheri] 8e-15; gi|260782625|ref|XP_002586385.1|hypothetical protein BRAFLDRAFT_108529 [Branchiostoma floridae] 1e-13; gi|999968127|gb|KXJ07301.1|hypothetical protein AC249_AIPGENE744 [Exaiptasia pallida] 1e-10; gi|999968946|gb|KXJ08120.1|hypothetical protein AC249_AIPGENE24817, partial [Exaiptasia pallida] 1e-10; gi|1050382093|gb|OCT84288.1|hypothetical protein XELAEV_18022446mg [Xenopus laevis] 1e-09; gi|1058260056|gb|JAT33513.1|hypothetical protein g.35742, partial [Graphocephala atropunctata] 4e-09; gi|1073701493|gb|JAT93803.1|putative catalytic giy-yig endonuclease domain of penelope-like elements, partial [Amblyomma aureolatum] 5e-09; gi|1050358850|gb|OCT61056.1|hypothetical protein XELAEV_18047084mg [Xenopus laevis] 2e-08;
NvERTx.4.126662 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 2e-25
other nr_hits gi|1126168229|ref|XP_019616014.1|PREDICTED: uncharacterized protein LOC109463602 [Branchiostoma belcheri] 6e-08; gi|1126165232|ref|XP_019614385.1|PREDICTED: uncharacterized protein LOC109462296 [Branchiostoma belcheri] 1e-05;
NvERTx.4.126664 R-4 0.88795714646 E-4 0.999076823772 I1EFY1_AMPQE Uncharacterized protein {ECO:0000313|EnsemblMetazoa:PAC:15702511} gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 1e-36
other nr_hits gi|1126168229|ref|XP_019616014.1|PREDICTED: uncharacterized protein LOC109463602 [Branchiostoma belcheri] 3e-06; gi|1005425620|ref|XP_015747850.1|PREDICTED: uncharacterized protein LOC107327618 [Acropora digitifera] 8e-06; gi|260809321|ref|XP_002599454.1|hypothetical protein BRAFLDRAFT_81045 [Branchiostoma floridae] 8e-06; gi|1050374274|gb|OCT76473.1|hypothetical protein XELAEV_18031674mg [Xenopus laevis] 2e-05; gi|260835691|ref|XP_002612841.1|hypothetical protein BRAFLDRAFT_67211 [Branchiostoma floridae] 2e-05; gi|260791303|ref|XP_002590679.1|hypothetical protein BRAFLDRAFT_89480 [Branchiostoma floridae] 2e-05; gi|1062816546|ref|XP_017950819.1|PREDICTED: uncharacterized protein LOC101731905 [Xenopus tropicalis] 3e-05; gi|780036586|ref|XP_011667483.1|PREDICTED: uncharacterized protein LOC105439791 [Strongylocentrotus purpuratus] 4e-05;
NvERTx.4.126665 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176060 R-4 0.88795714646 E-4 0.999076823772 C3YW12_BRAFL Putative uncharacterized protein {ECO:0000313|EMBL:EEN55466.1} gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 6e-27
other nr_hits gi|1126168229|ref|XP_019616014.1|PREDICTED: uncharacterized protein LOC109463602 [Branchiostoma belcheri] 2e-05; gi|260809321|ref|XP_002599454.1|hypothetical protein BRAFLDRAFT_81045 [Branchiostoma floridae] 3e-05;
NvERTx.4.176061 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176062 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176063 R-4 0.88795714646 E-4 0.999076823772 C3YW12_BRAFL Putative uncharacterized protein {ECO:0000313|EMBL:EEN55466.1} gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 1e-31
other nr_hits gi|1126168229|ref|XP_019616014.1|PREDICTED: uncharacterized protein LOC109463602 [Branchiostoma belcheri] 9e-11; gi|260809321|ref|XP_002599454.1|hypothetical protein BRAFLDRAFT_81045 [Branchiostoma floridae] 1e-08; gi|260782625|ref|XP_002586385.1|hypothetical protein BRAFLDRAFT_108529 [Branchiostoma floridae] 1e-08; gi|1062816546|ref|XP_017950819.1|PREDICTED: uncharacterized protein LOC101731905 [Xenopus tropicalis] 2e-08; gi|260791303|ref|XP_002590679.1|hypothetical protein BRAFLDRAFT_89480 [Branchiostoma floridae] 3e-08; gi|1005425620|ref|XP_015747850.1|PREDICTED: uncharacterized protein LOC107327618 [Acropora digitifera] 4e-08; gi|1050364237|gb|OCT66441.1|hypothetical protein XELAEV_18042691mg [Xenopus laevis] 7e-08; gi|1005481440|ref|XP_015777425.1|PREDICTED: uncharacterized protein LOC107355361 [Acropora digitifera] 9e-08; gi|1050346679|gb|OCT55763.1|hypothetical protein XELAEV_18004269mg [Xenopus laevis] 1e-07;
NvERTx.4.176064 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176065 R-4 0.88795714646 E-4 0.999076823772 NA NA None
other nr_hits NA
NvERTx.4.176066 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 5e-27
other nr_hits NA
NvERTx.4.176069 R-4 0.88795714646 E-4 0.999076823772 V3ZFW8_LOTGI Uncharacterized protein {ECO:0000313|EMBL:ESO83022.1} gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 1e-32
other nr_hits gi|676493605|ref|XP_009066291.1|hypothetical protein LOTGIDRAFT_176268 [Lottia gigantea] 7e-07; gi|1126168229|ref|XP_019616014.1|PREDICTED: uncharacterized protein LOC109463602 [Branchiostoma belcheri] 8e-06; gi|1005423018|ref|XP_015769595.1|PREDICTED: uncharacterized protein LOC107348098 [Acropora digitifera] 1e-05;
NvERTx.4.176070 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176071 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 5e-20
other nr_hits NA
NvERTx.4.176072 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 9e-25
other nr_hits NA
NvERTx.4.176073 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 2e-25
other nr_hits NA
NvERTx.4.176074 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 5e-16
other nr_hits NA
NvERTx.4.176075 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 6e-25
other nr_hits NA
NvERTx.4.183592 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 4e-16
other nr_hits NA
NvERTx.4.183596 R-4 0.88795714646 E-4 0.999076823772 A0A147BM78_IXORI Putative sm1 {ECO:0000313|EMBL:JAR91415.1} gi|1139810489|ref|XP_019924775.1|PREDICTED: uncharacterized protein LOC105333058 [Crassostrea gigas], 2e-77
other nr_hits gi|762143513|ref|XP_011455009.1|PREDICTED: uncharacterized protein LOC105347562 [Crassostrea gigas] 1e-76; gi|957840845|ref|XP_014670741.1|PREDICTED: uncharacterized protein LOC106811578 [Priapulus caudatus] 2e-76; gi|585642468|ref|XP_006811186.1|PREDICTED: uncharacterized protein LOC102804718 [Saccoglossus kowalevskii] 1e-71; gi|1058220924|gb|JAT13978.1|hypothetical protein g.35484 [Graphocephala atropunctata] 2e-66; gi|762158279|ref|XP_011417314.1|PREDICTED: uncharacterized protein LOC105320883 [Crassostrea gigas] 3e-66; gi|1005457070|ref|XP_015765663.1|PREDICTED: uncharacterized protein LOC107344505 [Acropora digitifera] 2e-65; gi|999969867|gb|KXJ09041.1|hypothetical protein AC249_AIPGENE26933 [Exaiptasia pallida] 2e-65; gi|1005425620|ref|XP_015747850.1|PREDICTED: uncharacterized protein LOC107327618 [Acropora digitifera] 9e-65; gi|743564531|gb|JAG58021.1|hypothetical protein, partial [Lygus hesperus] 2e-64;
NvERTx.4.183597 R-4 0.88795714646 E-4 0.999076823772 A0A147BM78_IXORI Putative sm1 {ECO:0000313|EMBL:JAR91415.1} gi|1005477126|ref|XP_015775322.1|PREDICTED: uncharacterized protein LOC107353512 [Acropora digitifera], 6e-37
other nr_hits gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis] 4e-33; gi|957840845|ref|XP_014670741.1|PREDICTED: uncharacterized protein LOC106811578 [Priapulus caudatus] 3e-31; gi|1126168229|ref|XP_019616014.1|PREDICTED: uncharacterized protein LOC109463602 [Branchiostoma belcheri] 8e-30; gi|1005467330|ref|XP_015770597.1|PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Acropora digitifera] 5e-29; gi|1069304528|ref|XP_018095947.1|PREDICTED: uncharacterized protein LOC108704076 [Xenopus laevis] 1e-28; gi|999968127|gb|KXJ07301.1|hypothetical protein AC249_AIPGENE744 [Exaiptasia pallida] 3e-28; gi|1005425620|ref|XP_015747850.1|PREDICTED: uncharacterized protein LOC107327618 [Acropora digitifera] 5e-28; gi|1050385437|gb|OCT87631.1|hypothetical protein XELAEV_18021328mg [Xenopus laevis] 7e-28; gi|999980554|gb|KXJ19728.1|hypothetical protein AC249_AIPGENE21522 [Exaiptasia pallida] 1e-27;
NvERTx.4.183598 R-4 0.88795714646 E-4 0.999076823772 A0A147BKN4_IXORI Putative sm1 {ECO:0000313|EMBL:JAR91353.1} gi|1005477126|ref|XP_015775322.1|PREDICTED: uncharacterized protein LOC107353512 [Acropora digitifera], 3e-46
other nr_hits gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis] 3e-44; gi|957840845|ref|XP_014670741.1|PREDICTED: uncharacterized protein LOC106811578 [Priapulus caudatus] 6e-40; gi|1139810489|ref|XP_019924775.1|PREDICTED: uncharacterized protein LOC105333058 [Crassostrea gigas] 1e-39; gi|1126168229|ref|XP_019616014.1|PREDICTED: uncharacterized protein LOC109463602 [Branchiostoma belcheri] 2e-37; gi|762143513|ref|XP_011455009.1|PREDICTED: uncharacterized protein LOC105347562 [Crassostrea gigas] 2e-37; gi|999968127|gb|KXJ07301.1|hypothetical protein AC249_AIPGENE744 [Exaiptasia pallida] 7e-37; gi|999968946|gb|KXJ08120.1|hypothetical protein AC249_AIPGENE24817, partial [Exaiptasia pallida] 3e-36; gi|1069304528|ref|XP_018095947.1|PREDICTED: uncharacterized protein LOC108704076 [Xenopus laevis] 2e-35; gi|1005425620|ref|XP_015747850.1|PREDICTED: uncharacterized protein LOC107327618 [Acropora digitifera] 5e-34;
NvERTx.4.183599 R-4 0.88795714646 E-4 0.999076823772 V3ZFW8_LOTGI Uncharacterized protein {ECO:0000313|EMBL:ESO83022.1} gi|156371080|ref|XP_001628594.1|predicted protein [Nematostella vectensis], 1e-26
other nr_hits gi|676493605|ref|XP_009066291.1|hypothetical protein LOTGIDRAFT_176268 [Lottia gigantea] 3e-07; gi|1152925519|gb|OOZ42535.1|hypothetical protein BOW37_12835, partial [Solemya velum gill symbiont] 8e-06; gi|1154073570|ref|WP_078455180.1|hypothetical protein [Solemya velum gill symbiont] 8e-06; gi|1152808958|gb|OOY36410.1|hypothetical protein BOV89_12725, partial [Solemya velum gill symbiont] 8e-06;
NvERTx.4.188484 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188486 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188487 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188490 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188491 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188493 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188494 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188492 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194002 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203586 R-4 0.88795714646 E-4 0.999076823772 No_Uniprotmatch No_Description None
other nr_hits NA
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