#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.134625 R-3 0.998610865831 E-3 0.999887884629 No_Uniprotmatch No_Description gi|156377926|ref|XP_001630896.1|predicted protein [Nematostella vectensis], 1e-112
other nr_hits gi|999988406|gb|KXJ27498.1|hypothetical protein AC249_AIPGENE2651 [Exaiptasia pallida] 7e-59; gi|156386939|ref|XP_001634168.1|predicted protein [Nematostella vectensis] 4e-57; gi|156379702|ref|XP_001631595.1|predicted protein [Nematostella vectensis] 1e-54; gi|999983485|gb|KXJ22626.1|hypothetical protein AC249_AIPGENE26568 [Exaiptasia pallida] 2e-54; gi|156391273|ref|XP_001635693.1|predicted protein [Nematostella vectensis] 5e-53; gi|999983478|gb|KXJ22619.1|hypothetical protein AC249_AIPGENE26597 [Exaiptasia pallida] 9e-53; gi|999983480|gb|KXJ22621.1|hypothetical protein AC249_AIPGENE26624 [Exaiptasia pallida] 1e-52; gi|156355100|ref|XP_001623512.1|predicted protein [Nematostella vectensis] 2e-52; gi|1005433020|ref|XP_015754069.1|PREDICTED: uncharacterized protein LOC107333732 [Acropora digitifera] 1e-51;
NvERTx.4.134626 R-3 0.998610865831 E-3 0.999887884629 No_Uniprotmatch No_Description gi|156377926|ref|XP_001630896.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999983485|gb|KXJ22626.1|hypothetical protein AC249_AIPGENE26568 [Exaiptasia pallida] 1e-214; gi|1005427186|ref|XP_015751377.1|PREDICTED: uncharacterized protein LOC107331317 [Acropora digitifera] 4e-211; gi|999988406|gb|KXJ27498.1|hypothetical protein AC249_AIPGENE2651 [Exaiptasia pallida] 4e-210; gi|999983480|gb|KXJ22621.1|hypothetical protein AC249_AIPGENE26624 [Exaiptasia pallida] 3e-203; gi|1005460247|ref|XP_015767204.1|PREDICTED: uncharacterized protein LOC107345966 isoform X4 [Acropora digitifera] 6e-202; gi|1005460245|ref|XP_015767203.1|PREDICTED: uncharacterized protein LOC107345966 isoform X3 [Acropora digitifera] 1e-198; gi|1005460239|ref|XP_015767199.1|PREDICTED: uncharacterized protein LOC107345966 isoform X1 [Acropora digitifera] 5e-198; gi|1005486501|ref|XP_015779851.1|PREDICTED: uncharacterized protein LOC107357729 [Acropora digitifera] 7e-195; gi|156383604|ref|XP_001632923.1|predicted protein [Nematostella vectensis] 2e-194;
NvERTx.4.134627 R-3 0.998610865831 E-3 0.999887884629 No_Uniprotmatch No_Description gi|156377926|ref|XP_001630896.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999983485|gb|KXJ22626.1|hypothetical protein AC249_AIPGENE26568 [Exaiptasia pallida] 1e-214; gi|1005427186|ref|XP_015751377.1|PREDICTED: uncharacterized protein LOC107331317 [Acropora digitifera] 4e-211; gi|999988406|gb|KXJ27498.1|hypothetical protein AC249_AIPGENE2651 [Exaiptasia pallida] 4e-210; gi|999983480|gb|KXJ22621.1|hypothetical protein AC249_AIPGENE26624 [Exaiptasia pallida] 1e-203; gi|1005460247|ref|XP_015767204.1|PREDICTED: uncharacterized protein LOC107345966 isoform X4 [Acropora digitifera] 6e-202; gi|1005460245|ref|XP_015767203.1|PREDICTED: uncharacterized protein LOC107345966 isoform X3 [Acropora digitifera] 1e-198; gi|1005460239|ref|XP_015767199.1|PREDICTED: uncharacterized protein LOC107345966 isoform X1 [Acropora digitifera] 5e-198; gi|1005486501|ref|XP_015779851.1|PREDICTED: uncharacterized protein LOC107357729 [Acropora digitifera] 1e-194; gi|156383604|ref|XP_001632923.1|predicted protein [Nematostella vectensis] 2e-194;
NvERTx.4.137446 R-3 0.998610865831 E-3 0.999887884629 No_Uniprotmatch No_Description gi|156377926|ref|XP_001630896.1|predicted protein [Nematostella vectensis], 2e-27
other nr_hits NA
NvERTx.4.115069 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146986 R-3 0.998602236796 E-5 0.856124018278 NA NA None
other nr_hits NA
NvERTx.4.146995 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146996 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146997 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146998 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146999 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146987 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146988 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146989 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146991 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146992 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146993 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146994 R-3 0.998602236796 E-5 0.856124018278 NA NA None
other nr_hits NA
NvERTx.4.147000 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147001 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.178415 R-3 0.998602236796 E-5 0.856124018278 O33730 Uncharacterized oxidoreductase Sfri_1503 gi|156407190|ref|XP_001641427.1|predicted protein [Nematostella vectensis], 9e-105
other nr_hits gi|999984171|gb|KXJ23312.1|3-hydroxyisobutyrate dehydrogenase, mitochondrial [Exaiptasia pallida] 3e-70; gi|919013209|ref|XP_013391099.1|PREDICTED: 2-hydroxy-3-oxopropionate reductase-like [Lingula anatina] 1e-60; gi|919035289|ref|XP_013401163.1|PREDICTED: 2-hydroxy-3-oxopropionate reductase-like [Lingula anatina] 1e-60; gi|919035401|ref|XP_013401218.1|PREDICTED: 2-hydroxy-3-oxopropionate reductase-like [Lingula anatina] 7e-59; gi|1126158422|ref|XP_019614612.1|PREDICTED: uncharacterized protein LOC109462496 [Branchiostoma belcheri] 9e-54; gi|949031384|gb|KRO37916.1|3-hydroxyisobutyrate dehydrogenase [Acidimicrobium sp. BACL17 MAG-120924-bin0] 5e-34; gi|1129179152|gb|OLP86964.1|3-hydroxyisobutyrate dehydrogenase, mitochondrial [Symbiodinium microadriaticum] 2e-32; gi|522081900|ref|WP_020593109.1|hypothetical protein [Kiloniella laminariae] 2e-32; gi|836613232|ref|WP_047764908.1|3-hydroxyisobutyrate dehydrogenase [Kiloniella spongiae] 3e-32;
NvERTx.4.178433 R-3 0.998602236796 E-5 0.856124018278 Q54CX6 Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial gi|156407190|ref|XP_001641427.1|predicted protein [Nematostella vectensis], 7e-77
other nr_hits gi|999984171|gb|KXJ23312.1|3-hydroxyisobutyrate dehydrogenase, mitochondrial [Exaiptasia pallida] 1e-31; gi|919035289|ref|XP_013401163.1|PREDICTED: 2-hydroxy-3-oxopropionate reductase-like [Lingula anatina] 1e-22; gi|919013209|ref|XP_013391099.1|PREDICTED: 2-hydroxy-3-oxopropionate reductase-like [Lingula anatina] 2e-22; gi|1126158422|ref|XP_019614612.1|PREDICTED: uncharacterized protein LOC109462496 [Branchiostoma belcheri] 1e-21; gi|1067090910|ref|XP_018007219.1|PREDICTED: 2-hydroxy-3-oxopropionate reductase-like [Hyalella azteca] 1e-16; gi|831753158|ref|XP_012747730.1|hypothetical protein SAMD00019534_124790 [Acytostelium subglobosum LB1] 3e-15; gi|494913742|ref|WP_007639780.1|3-hydroxyisobutyrate dehydrogenase [Paraglaciecola psychrophila] 7e-15; gi|739210939|ref|WP_037074327.1|3-hydroxyisobutyrate dehydrogenase [Rhizobium sp. PDO1-076] 1e-14; gi|375054698|gb|EHS51026.1|6-phosphogluconate dehydrogenase NAD-binding protein [Rhizobium sp. PDO1-076] 1e-14;
NvERTx.4.178429 R-3 0.998602236796 E-5 0.856124018278 A0A146Q9A7_FUNHE Reverse transcriptase-like protein {ECO:0000313|EMBL:JAQ52882.1} gi|156350048|ref|XP_001622119.1|predicted protein [Nematostella vectensis], 9e-80
other nr_hits gi|828204698|ref|XP_012556347.1|PREDICTED: uncharacterized protein LOC105844360, partial [Hydra vulgaris] 3e-42; gi|443717988|gb|ELU08793.1|hypothetical protein CAPTEDRAFT_204672 [Capitella teleta] 7e-38; gi|1005486134|ref|XP_015779665.1|PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Acropora digitifera] 3e-36; gi|928083260|ref|XP_013856520.1|PREDICTED: uncharacterized protein LOC106512449, partial [Austrofundulus limnaeus] 4e-35; gi|999978838|gb|KXJ18012.1|hypothetical protein AC249_AIPGENE27483 [Exaiptasia pallida] 9e-35; gi|1110874297|ref|XP_019210723.1|PREDICTED: uncharacterized protein LOC109199848 [Oreochromis niloticus] 2e-34; gi|1005438090|ref|XP_015756456.1|PREDICTED: uncharacterized protein LOC107335916 [Acropora digitifera] 1e-29; gi|443688933|gb|ELT91461.1|hypothetical protein CAPTEDRAFT_196521, partial [Capitella teleta] 4e-29; gi|443699728|gb|ELT99048.1|hypothetical protein CAPTEDRAFT_209938, partial [Capitella teleta] 4e-29;
NvERTx.4.178431 R-3 0.998602236796 E-5 0.856124018278 Q54CX6 Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial gi|156407190|ref|XP_001641427.1|predicted protein [Nematostella vectensis], 7e-77
other nr_hits gi|999984171|gb|KXJ23312.1|3-hydroxyisobutyrate dehydrogenase, mitochondrial [Exaiptasia pallida] 1e-31; gi|919035289|ref|XP_013401163.1|PREDICTED: 2-hydroxy-3-oxopropionate reductase-like [Lingula anatina] 1e-22; gi|919013209|ref|XP_013391099.1|PREDICTED: 2-hydroxy-3-oxopropionate reductase-like [Lingula anatina] 2e-22; gi|1126158422|ref|XP_019614612.1|PREDICTED: uncharacterized protein LOC109462496 [Branchiostoma belcheri] 1e-21; gi|1067090910|ref|XP_018007219.1|PREDICTED: 2-hydroxy-3-oxopropionate reductase-like [Hyalella azteca] 1e-16; gi|831753158|ref|XP_012747730.1|hypothetical protein SAMD00019534_124790 [Acytostelium subglobosum LB1] 3e-15; gi|494913742|ref|WP_007639780.1|3-hydroxyisobutyrate dehydrogenase [Paraglaciecola psychrophila] 7e-15; gi|739210939|ref|WP_037074327.1|3-hydroxyisobutyrate dehydrogenase [Rhizobium sp. PDO1-076] 1e-14; gi|375054698|gb|EHS51026.1|6-phosphogluconate dehydrogenase NAD-binding protein [Rhizobium sp. PDO1-076] 1e-14;
NvERTx.4.190226 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description gi|1005445116|ref|XP_015759872.1|PREDICTED: uncharacterized protein LOC107339143, partial [Acropora digitifera], 2e-15
other nr_hits NA
NvERTx.4.190227 R-3 0.998602236796 E-5 0.856124018278 B3S0V9_TRIAD Putative uncharacterized protein {ECO:0000313|EMBL:EDV24073.1} gi|156400134|ref|XP_001638855.1|predicted protein [Nematostella vectensis], 8e-92
other nr_hits gi|999986583|gb|KXJ25716.1|Crt-like 1 [Exaiptasia pallida] 2e-76; gi|196007466|ref|XP_002113599.1|hypothetical protein TRIADDRAFT_57187 [Trichoplax adhaerens] 6e-63; gi|1126207058|ref|XP_019637134.1|PREDICTED: uncharacterized protein LOC109479587 [Branchiostoma belcheri] 5e-59; gi|1126209669|ref|XP_019638561.1|PREDICTED: uncharacterized protein LOC109480733 [Branchiostoma belcheri] 2e-58; gi|196006748|ref|XP_002113240.1|hypothetical protein TRIADDRAFT_57188 [Trichoplax adhaerens] 7e-56; gi|1133456332|ref|XP_019849848.1|PREDICTED: crt homolog 3-like [Amphimedon queenslandica] 9e-46; gi|999987702|gb|KXJ26813.1|hypothetical protein AC249_AIPGENE26401 [Exaiptasia pallida] 2e-44; gi|1005419028|ref|XP_015747761.1|PREDICTED: uncharacterized protein LOC107327496 [Acropora digitifera] 6e-42; gi|762155453|ref|XP_011415829.1|PREDICTED: uncharacterized protein LOC105319829 isoform X2 [Crassostrea gigas] 2e-41;
NvERTx.4.190228 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description gi|1005445116|ref|XP_015759872.1|PREDICTED: uncharacterized protein LOC107339143, partial [Acropora digitifera], 2e-15
other nr_hits NA
NvERTx.4.190229 R-3 0.998602236796 E-5 0.856124018278 B3S0V9_TRIAD Putative uncharacterized protein {ECO:0000313|EMBL:EDV24073.1} gi|156400134|ref|XP_001638855.1|predicted protein [Nematostella vectensis], 5e-38
other nr_hits gi|999986583|gb|KXJ25716.1|Crt-like 1 [Exaiptasia pallida] 7e-35; gi|1126209669|ref|XP_019638561.1|PREDICTED: uncharacterized protein LOC109480733 [Branchiostoma belcheri] 5e-28; gi|999987702|gb|KXJ26813.1|hypothetical protein AC249_AIPGENE26401 [Exaiptasia pallida] 2e-26; gi|1126207058|ref|XP_019637134.1|PREDICTED: uncharacterized protein LOC109479587 [Branchiostoma belcheri] 1e-25; gi|196007466|ref|XP_002113599.1|hypothetical protein TRIADDRAFT_57187 [Trichoplax adhaerens] 1e-25; gi|260821868|ref|XP_002606325.1|hypothetical protein BRAFLDRAFT_67567 [Branchiostoma floridae] 2e-25; gi|156400214|ref|XP_001638895.1|predicted protein [Nematostella vectensis] 3e-23; gi|390343292|ref|XP_003725842.1|PREDICTED: uncharacterized protein LOC100888473 [Strongylocentrotus purpuratus] 4e-22; gi|762155453|ref|XP_011415829.1|PREDICTED: uncharacterized protein LOC105319829 isoform X2 [Crassostrea gigas] 9e-22;
NvERTx.4.192913 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192916 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192925 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192926 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192927 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192928 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192930 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192932 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192917 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192918 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192919 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192920 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192921 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192922 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192923 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192924 R-3 0.998602236796 E-5 0.856124018278 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.56895 R-3 0.99859797499 E-8 0.999970927755 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.56896 R-3 0.99859797499 E-8 0.999970927755 No_Uniprotmatch No_Description gi|156382429|ref|XP_001632556.1|predicted protein [Nematostella vectensis], 3e-98
other nr_hits gi|999988063|gb|KXJ27166.1|hypothetical protein AC249_AIPGENE13746 [Exaiptasia pallida] 3e-05;
NvERTx.4.56897 R-3 0.99859797499 E-8 0.999970927755 No_Uniprotmatch No_Description gi|156382429|ref|XP_001632556.1|predicted protein [Nematostella vectensis], 1e-131
other nr_hits gi|999988063|gb|KXJ27166.1|hypothetical protein AC249_AIPGENE13746 [Exaiptasia pallida] 7e-06;
NvERTx.4.56898 R-3 0.99859797499 E-8 0.999970927755 No_Uniprotmatch No_Description gi|156382429|ref|XP_001632556.1|predicted protein [Nematostella vectensis], 1e-131
other nr_hits gi|999988063|gb|KXJ27166.1|hypothetical protein AC249_AIPGENE13746 [Exaiptasia pallida] 7e-06;
NvERTx.4.13133 R-3 0.998568077548 E-8 0.999999999987 P47800 D(1)-like dopamine receptor gi|156372714|ref|XP_001629181.1|predicted protein [Nematostella vectensis], 2e-144
other nr_hits gi|156339010|ref|XP_001620059.1|hypothetical protein NEMVEDRAFT_v1g223523 [Nematostella vectensis] 2e-47; gi|156367237|ref|XP_001627325.1|predicted protein [Nematostella vectensis] 3e-47; gi|1005469641|ref|XP_015771718.1|PREDICTED: octopamine receptor-like [Acropora digitifera] 1e-46; gi|1005469643|ref|XP_015771720.1|PREDICTED: muscarinic acetylcholine receptor M3-like [Acropora digitifera] 1e-46; gi|1005441277|ref|XP_015757968.1|PREDICTED: dopamine receptor 2-like [Acropora digitifera] 2e-44; gi|1005451391|ref|XP_015762875.1|PREDICTED: octopamine receptor-like isoform X1 [Acropora digitifera] 2e-44; gi|1005473317|ref|XP_015773490.1|PREDICTED: dopamine receptor 2-like [Acropora digitifera] 2e-44; gi|999973312|gb|KXJ12486.1|Histamine H2 receptor [Exaiptasia pallida] 1e-43; gi|999989609|gb|KXJ28643.1|Alpha-1A adrenergic receptor [Exaiptasia pallida] 2e-43;
NvERTx.4.45380 R-3 0.998568077548 E-8 0.999999999987 P47800 D(1)-like dopamine receptor gi|156372714|ref|XP_001629181.1|predicted protein [Nematostella vectensis], 2e-145
other nr_hits gi|1005469643|ref|XP_015771720.1|PREDICTED: muscarinic acetylcholine receptor M3-like [Acropora digitifera] 1e-48; gi|156339010|ref|XP_001620059.1|hypothetical protein NEMVEDRAFT_v1g223523 [Nematostella vectensis] 5e-48; gi|156367237|ref|XP_001627325.1|predicted protein [Nematostella vectensis] 2e-47; gi|1005469641|ref|XP_015771718.1|PREDICTED: octopamine receptor-like [Acropora digitifera] 2e-47; gi|1005441277|ref|XP_015757968.1|PREDICTED: dopamine receptor 2-like [Acropora digitifera] 3e-46; gi|999989094|gb|KXJ28146.1|Beta-2 adrenergic receptor [Exaiptasia pallida] 7e-45; gi|1005473317|ref|XP_015773490.1|PREDICTED: dopamine receptor 2-like [Acropora digitifera] 9e-45; gi|1005451391|ref|XP_015762875.1|PREDICTED: octopamine receptor-like isoform X1 [Acropora digitifera] 1e-44; gi|156367345|ref|XP_001627378.1|predicted protein [Nematostella vectensis] 1e-44;
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