#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.204040 R-3 0.61399276829 E-2 0.999998919717 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.209115 R-3 0.61399276829 E-2 0.999998919717 No_Uniprotmatch No_Description gi|156405561|ref|XP_001640800.1|predicted protein [Nematostella vectensis], 1e-06
other nr_hits NA
NvERTx.4.212582 R-3 0.61399276829 E-2 0.999998919717 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.212992 R-3 0.61399276829 E-2 0.999998919717 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159524 R-3 0.613796840341 E-1 1.0 Q96HJ3 Coiled-coil domain-containing protein 34 gi|156408624|ref|XP_001641956.1|predicted protein [Nematostella vectensis], 4e-104
other nr_hits gi|1005439766|ref|XP_015757240.1|PREDICTED: coiled-coil domain-containing protein 34-like [Acropora digitifera] 2e-24; gi|999971584|gb|KXJ10758.1|Coiled-coil domain-containing protein 34 [Exaiptasia pallida] 4e-17; gi|1126167806|ref|XP_019615781.1|PREDICTED: coiled-coil domain-containing protein 34-like [Branchiostoma belcheri] 1e-13; gi|260801845|ref|XP_002595805.1|hypothetical protein BRAFLDRAFT_128092 [Branchiostoma floridae] 2e-13; gi|573910130|ref|XP_006642783.1|PREDICTED: coiled-coil domain-containing protein 34 [Lepisosteus oculatus] 5e-11; gi|1121908337|ref|XP_019406881.1|PREDICTED: coiled-coil domain-containing protein 34 [Crocodylus porosus] 3e-10; gi|919069499|ref|XP_013416226.1|PREDICTED: coiled-coil domain-containing protein 34-like [Lingula anatina] 3e-10; gi|291384750|ref|XP_002709252.1|PREDICTED: coiled-coil domain-containing protein 34 [Oryctolagus cuniculus] 7e-10; gi|1113795750|ref|XP_014457602.2|PREDICTED: coiled-coil domain-containing protein 34 [Alligator mississippiensis] 1e-09;
NvERTx.4.159525 R-3 0.613796840341 E-1 1.0 Q96HJ3 Coiled-coil domain-containing protein 34 gi|156408624|ref|XP_001641956.1|predicted protein [Nematostella vectensis], 8e-108
other nr_hits gi|1005439766|ref|XP_015757240.1|PREDICTED: coiled-coil domain-containing protein 34-like [Acropora digitifera] 6e-26; gi|999971584|gb|KXJ10758.1|Coiled-coil domain-containing protein 34 [Exaiptasia pallida] 4e-17; gi|1126167806|ref|XP_019615781.1|PREDICTED: coiled-coil domain-containing protein 34-like [Branchiostoma belcheri] 1e-13; gi|260801845|ref|XP_002595805.1|hypothetical protein BRAFLDRAFT_128092 [Branchiostoma floridae] 2e-13; gi|573910130|ref|XP_006642783.1|PREDICTED: coiled-coil domain-containing protein 34 [Lepisosteus oculatus] 5e-11; gi|1121908337|ref|XP_019406881.1|PREDICTED: coiled-coil domain-containing protein 34 [Crocodylus porosus] 3e-10; gi|919069499|ref|XP_013416226.1|PREDICTED: coiled-coil domain-containing protein 34-like [Lingula anatina] 3e-10; gi|291384750|ref|XP_002709252.1|PREDICTED: coiled-coil domain-containing protein 34 [Oryctolagus cuniculus] 6e-10; gi|1113795750|ref|XP_014457602.2|PREDICTED: coiled-coil domain-containing protein 34 [Alligator mississippiensis] 1e-09;
NvERTx.4.120324 R-3 0.613377053688 E-6 0.559743127082 Q9CPW0 Contactin-associated protein-like 2 gi|156399899|ref|XP_001638738.1|predicted protein [Nematostella vectensis], 1e-64
other nr_hits gi|1005422485|ref|XP_015766852.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 2e-62; gi|1005422490|ref|XP_015766869.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 2e-61; gi|1005422483|ref|XP_015766840.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 5e-61; gi|1005422487|ref|XP_015766861.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 1e-60; gi|1005422478|ref|XP_015766816.1|PREDICTED: contactin-associated protein-like 2 isoform X2 [Acropora digitifera] 2e-59; gi|1005422476|ref|XP_015766809.1|PREDICTED: contactin-associated protein-like 2 isoform X1 [Acropora digitifera] 6e-59; gi|1005472806|ref|XP_015773262.1|PREDICTED: contactin-associated protein-like 2 isoform X2 [Acropora digitifera] 4e-56; gi|1005424860|ref|XP_015778178.1|PREDICTED: neurexin-4-like [Acropora digitifera] 6e-56; gi|1005486016|ref|XP_015779605.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 8e-56;
NvERTx.4.120325 R-3 0.613377053688 E-6 0.559743127082 Q9CPW0 Contactin-associated protein-like 2 gi|156399899|ref|XP_001638738.1|predicted protein [Nematostella vectensis], 3e-65
other nr_hits gi|1005422485|ref|XP_015766852.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 6e-62; gi|1005422490|ref|XP_015766869.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 5e-61; gi|1005422483|ref|XP_015766840.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 7e-61; gi|1005422487|ref|XP_015766861.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 6e-60; gi|1005422478|ref|XP_015766816.1|PREDICTED: contactin-associated protein-like 2 isoform X2 [Acropora digitifera] 1e-59; gi|1005422476|ref|XP_015766809.1|PREDICTED: contactin-associated protein-like 2 isoform X1 [Acropora digitifera] 4e-59; gi|1005486016|ref|XP_015779605.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 1e-56; gi|1005424860|ref|XP_015778178.1|PREDICTED: neurexin-4-like [Acropora digitifera] 5e-56; gi|1005472806|ref|XP_015773262.1|PREDICTED: contactin-associated protein-like 2 isoform X2 [Acropora digitifera] 2e-55;
NvERTx.4.120326 R-3 0.613377053688 E-6 0.559743127082 Q9CPW0 Contactin-associated protein-like 2 gi|156399899|ref|XP_001638738.1|predicted protein [Nematostella vectensis], 1e-64
other nr_hits gi|1005422485|ref|XP_015766852.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 2e-62; gi|1005422490|ref|XP_015766869.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 2e-61; gi|1005422483|ref|XP_015766840.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 5e-61; gi|1005422487|ref|XP_015766861.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 1e-60; gi|1005422478|ref|XP_015766816.1|PREDICTED: contactin-associated protein-like 2 isoform X2 [Acropora digitifera] 2e-59; gi|1005422476|ref|XP_015766809.1|PREDICTED: contactin-associated protein-like 2 isoform X1 [Acropora digitifera] 6e-59; gi|1005472806|ref|XP_015773262.1|PREDICTED: contactin-associated protein-like 2 isoform X2 [Acropora digitifera] 4e-56; gi|1005424860|ref|XP_015778178.1|PREDICTED: neurexin-4-like [Acropora digitifera] 6e-56; gi|1005486016|ref|XP_015779605.1|PREDICTED: contactin-associated protein-like 2 [Acropora digitifera] 8e-56;
NvERTx.4.70399 R-3 0.613337837026 E-6 0.99999966786 Q96PQ7 Kelch-like protein 5 gi|999990395|gb|KXJ29419.1|Kelch-like protein 4 [Exaiptasia pallida], 1e-118
other nr_hits gi|1005449777|ref|XP_015762096.1|PREDICTED: influenza virus NS1A-binding protein homolog B-like [Acropora digitifera] 5e-94; gi|156380730|ref|XP_001631920.1|predicted protein [Nematostella vectensis] 2e-81; gi|1058010012|gb|JAS08690.1|hypothetical protein g.11848 [Clastoptera arizonana] 3e-20; gi|701354078|ref|XP_009975294.1|PREDICTED: LOW QUALITY PROTEIN: kelch-like protein 10 [Tyto alba] 8e-20; gi|500182635|ref|WP_011856958.1|protein kinase [Mycobacterium sp. JLS] 8e-20; gi|1039600618|ref|WP_064916913.1|protein kinase [Mycobacterium sp. 852002-10379_SCH5584320] 1e-19; gi|1039546329|ref|WP_064876267.1|protein kinase [Mycobacterium sp. 852013-50142_SCH4511227] 1e-19; gi|499880992|ref|WP_011561726.1|MULTISPECIES: protein kinase [Mycobacterium] 1e-19; gi|1005474704|ref|XP_015774129.1|PREDICTED: kelch domain-containing protein 8B-like isoform X1 [Acropora digitifera] 4e-19;
NvERTx.4.182351 R-3 0.613337837026 E-6 0.99999966786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.182352 R-3 0.613337837026 E-6 0.99999966786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.219004 R-3 0.613337837026 E-6 0.99999966786 E7F6F9 Kelch-like protein 3 gi|999990395|gb|KXJ29419.1|Kelch-like protein 4 [Exaiptasia pallida], 2e-19
other nr_hits gi|156380730|ref|XP_001631920.1|predicted protein [Nematostella vectensis] 2e-18; gi|1005449777|ref|XP_015762096.1|PREDICTED: influenza virus NS1A-binding protein homolog B-like [Acropora digitifera] 7e-13;
NvERTx.4.219993 R-3 0.613337837026 E-6 0.99999966786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131116 R-3 0.613215691488 E-6 0.999999153372 Q09470 Potassium voltage-gated channel subfamily A member 1 gi|425892106|gb|AFY09705.1|potassium channel, partial [Nematostella vectensis], 2e-224
other nr_hits gi|156369500|ref|XP_001628014.1|predicted protein [Nematostella vectensis] 3e-172; gi|999972952|gb|KXJ12126.1|Potassium voltage-gated channel subfamily A member 2 [Exaiptasia pallida] 3e-140; gi|1005458379|ref|XP_015766324.1|PREDICTED: potassium voltage-gated channel subfamily A member 3-like [Acropora digitifera] 3e-127; gi|1005465257|ref|XP_015769631.1|PREDICTED: LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily A member 2-like [Acropora digitifera] 3e-102; gi|999972935|gb|KXJ12109.1|Potassium voltage-gated channel protein Shaker [Exaiptasia pallida] 5e-102; gi|425892108|gb|AFY09706.1|potassium channel, partial [Nematostella vectensis] 6e-102; gi|156371807|ref|XP_001628953.1|predicted protein [Nematostella vectensis] 1e-101; gi|828205584|ref|XP_012556663.1|PREDICTED: potassium voltage-gated channel subfamily A member 2-like [Hydra vulgaris] 2e-98; gi|291232444|ref|XP_002736169.1|PREDICTED: potassium voltage-gated channel subfamily A member 4-like [Saccoglossus kowalevskii] 3e-90;
NvERTx.4.131117 R-3 0.613215691488 E-6 0.999999153372 Q09470 Potassium voltage-gated channel subfamily A member 1 gi|425892106|gb|AFY09705.1|potassium channel, partial [Nematostella vectensis], 2e-224
other nr_hits gi|156369500|ref|XP_001628014.1|predicted protein [Nematostella vectensis] 3e-172; gi|999972952|gb|KXJ12126.1|Potassium voltage-gated channel subfamily A member 2 [Exaiptasia pallida] 3e-140; gi|1005458379|ref|XP_015766324.1|PREDICTED: potassium voltage-gated channel subfamily A member 3-like [Acropora digitifera] 3e-127; gi|1005465257|ref|XP_015769631.1|PREDICTED: LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily A member 2-like [Acropora digitifera] 3e-102; gi|999972935|gb|KXJ12109.1|Potassium voltage-gated channel protein Shaker [Exaiptasia pallida] 5e-102; gi|425892108|gb|AFY09706.1|potassium channel, partial [Nematostella vectensis] 6e-102; gi|156371807|ref|XP_001628953.1|predicted protein [Nematostella vectensis] 1e-101; gi|828205584|ref|XP_012556663.1|PREDICTED: potassium voltage-gated channel subfamily A member 2-like [Hydra vulgaris] 2e-98; gi|291232444|ref|XP_002736169.1|PREDICTED: potassium voltage-gated channel subfamily A member 4-like [Saccoglossus kowalevskii] 3e-90;
NvERTx.4.131118 R-3 0.613215691488 E-6 0.999999153372 Q09470 Potassium voltage-gated channel subfamily A member 1 gi|425892106|gb|AFY09705.1|potassium channel, partial [Nematostella vectensis], 2e-224
other nr_hits gi|156369500|ref|XP_001628014.1|predicted protein [Nematostella vectensis] 3e-172; gi|999972952|gb|KXJ12126.1|Potassium voltage-gated channel subfamily A member 2 [Exaiptasia pallida] 3e-140; gi|1005458379|ref|XP_015766324.1|PREDICTED: potassium voltage-gated channel subfamily A member 3-like [Acropora digitifera] 3e-127; gi|1005465257|ref|XP_015769631.1|PREDICTED: LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily A member 2-like [Acropora digitifera] 3e-102; gi|999972935|gb|KXJ12109.1|Potassium voltage-gated channel protein Shaker [Exaiptasia pallida] 5e-102; gi|425892108|gb|AFY09706.1|potassium channel, partial [Nematostella vectensis] 6e-102; gi|156371807|ref|XP_001628953.1|predicted protein [Nematostella vectensis] 1e-101; gi|828205584|ref|XP_012556663.1|PREDICTED: potassium voltage-gated channel subfamily A member 2-like [Hydra vulgaris] 2e-98; gi|291232444|ref|XP_002736169.1|PREDICTED: potassium voltage-gated channel subfamily A member 4-like [Saccoglossus kowalevskii] 3e-90;
NvERTx.4.168 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.21530 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.23281 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.27070 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.43324 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.3074 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.63061 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.68105 R-3 0.612653639811 E-7 0.999769953684 Q3B8H4 Rhombotin-1 gi|999985382|gb|KXJ24523.1|Rhombotin-1 [Exaiptasia pallida], 9e-61
other nr_hits gi|1005423313|ref|XP_015770990.1|PREDICTED: LIM domain only protein 3-like [Acropora digitifera] 1e-48; gi|926621574|ref|XP_013776130.1|PREDICTED: LIM domain only protein 3-like [Limulus polyphemus] 8e-44; gi|1005428589|ref|XP_015752022.1|PREDICTED: LIM domain only protein 3-like isoform X2 [Acropora digitifera] 3e-43; gi|585667052|ref|XP_006817234.1|PREDICTED: LIM domain only protein 3-like [Saccoglossus kowalevskii] 4e-43; gi|1009558118|ref|XP_015913913.1|PREDICTED: LIM domain only protein 3-like [Parasteatoda tepidariorum] 1e-42; gi|1005428587|ref|XP_015752021.1|PREDICTED: LIM domain only protein 3-like isoform X1 [Acropora digitifera] 1e-42; gi|936679130|ref|XP_014230157.1|PREDICTED: LIM/homeobox protein Lhx9-like isoform X1 [Trichogramma pretiosum] 4e-42; gi|936679132|ref|XP_014230165.1|PREDICTED: LIM domain transcription factor LMO4-B-like isoform X2 [Trichogramma pretiosum] 4e-42; gi|675375654|gb|KFM68556.1|Rhombotin-1, partial [Stegodyphus mimosarum] 5e-42;
NvERTx.4.68106 R-3 0.612653639811 E-7 0.999769953684 A0A1E1XVP4_9ACAR Uncharacterized protein {ECO:0000313|EMBL:JAU03356.1} gi|1073720856|gb|JAU03356.1|hypothetical protein, partial [Amblyomma sculptum], 2e-05
other nr_hits NA
NvERTx.4.68108 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76001 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76002 R-3 0.612653639811 E-7 0.999769953684 P23919 Thymidylate kinase gi|156380955|ref|XP_001632032.1|predicted protein [Nematostella vectensis], 4e-117
other nr_hits gi|999975861|gb|KXJ15035.1|Thymidylate kinase [Exaiptasia pallida] 2e-69; gi|585645971|ref|XP_006811655.1|PREDICTED: thymidylate kinase-like [Saccoglossus kowalevskii] 8e-67; gi|919072261|ref|XP_013417404.1|PREDICTED: thymidylate kinase-like [Lingula anatina] 7e-63; gi|1072267694|ref|XP_018419443.1|PREDICTED: thymidylate kinase isoform X1 [Nanorana parkeri] 3e-61; gi|573900015|ref|XP_006637737.1|PREDICTED: thymidylate kinase [Lepisosteus oculatus] 7e-61; gi|1117243096|ref|XP_019368844.1|PREDICTED: thymidylate kinase [Gavialis gangeticus] 9e-61; gi|1121871190|ref|XP_019398546.1|PREDICTED: thymidylate kinase [Crocodylus porosus] 2e-60; gi|959046625|ref|XP_014725896.1|PREDICTED: thymidylate kinase isoform X1 [Sturnus vulgaris] 2e-60; gi|470304988|ref|XP_004348250.1|deoxythymidylate kinase [Capsaspora owczarzaki ATCC 30864] 3e-60;
NvERTx.4.82080 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82081 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96925 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97813 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112792 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.117837 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.117838 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118841 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118846 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.129639 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.129640 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.129641 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130325 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130326 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.132519 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.134729 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.182222 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202386 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202387 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202407 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202408 R-3 0.612653639811 E-7 0.999769953684 No_Uniprotmatch No_Description None
other nr_hits NA
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