#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

Search by gene name


Search by NvERTx ID





Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.167130 R-2 0.99990847372 E-6 0.999999994631 No_Uniprotmatch No_Description gi|156323052|ref|XP_001618349.1|hypothetical protein NEMVEDRAFT_v1g154820 [Nematostella vectensis], 4e-05
other nr_hits NA
NvERTx.4.167134 R-2 0.99990847372 E-6 0.999999994631 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185056 R-2 0.99990847372 E-6 0.999999994631 No_Uniprotmatch No_Description gi|156378637|ref|XP_001631248.1|predicted protein [Nematostella vectensis], 2e-20
other nr_hits gi|156345586|ref|XP_001621410.1|hypothetical protein NEMVEDRAFT_v1g222021 [Nematostella vectensis] 7e-16;
NvERTx.4.185058 R-2 0.99990847372 E-6 0.999999994631 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185061 R-2 0.99990847372 E-6 0.999999994631 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.43396 R-2 0.999907191071 E-6 0.999986709014 No_Uniprotmatch No_Description gi|156406705|ref|XP_001641185.1|predicted protein [Nematostella vectensis], 1e-31
other nr_hits NA
NvERTx.4.43397 R-2 0.999907191071 E-6 0.999986709014 No_Uniprotmatch No_Description gi|156406705|ref|XP_001641185.1|predicted protein [Nematostella vectensis], 1e-55
other nr_hits NA
NvERTx.4.51578 R-2 0.999907191071 E-6 0.999986709014 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.88173 R-2 0.999907191071 E-6 0.999986709014 No_Uniprotmatch No_Description gi|156406705|ref|XP_001641185.1|predicted protein [Nematostella vectensis], 2e-60
other nr_hits NA
NvERTx.4.88175 R-2 0.999907191071 E-6 0.999986709014 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112035 R-2 0.999905906465 E-8 0.99982889912 Q2PZL6 Protocadherin Fat 4 gi|156404488|ref|XP_001640439.1|predicted protein [Nematostella vectensis], 7e-62
other nr_hits gi|999977933|gb|KXJ17107.1|Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Exaiptasia pallida] 1e-34; gi|780169365|ref|XP_011684237.1|PREDICTED: fibropellin-1-like isoform X1 [Strongylocentrotus purpuratus] 2e-32; gi|780169370|ref|XP_011684238.1|PREDICTED: fibropellin-1-like isoform X2 [Strongylocentrotus purpuratus] 2e-32; gi|156385301|ref|XP_001633569.1|predicted protein [Nematostella vectensis] 3e-32; gi|156369995|ref|XP_001628258.1|predicted protein [Nematostella vectensis] 1e-31; gi|156400262|ref|XP_001638919.1|predicted protein [Nematostella vectensis] 1e-31; gi|260826470|ref|XP_002608188.1|hypothetical protein BRAFLDRAFT_125860 [Branchiostoma floridae] 3e-31; gi|156388853|ref|XP_001634707.1|predicted protein [Nematostella vectensis] 5e-31; gi|156340398|ref|XP_001620440.1|hypothetical protein NEMVEDRAFT_v1g148151 [Nematostella vectensis] 5e-31;
NvERTx.4.112037 R-2 0.999905906465 E-8 0.99982889912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112048 R-2 0.999905906465 E-8 0.99982889912 A0A1S3ITD5_LINUN uncharacterized protein LOC106167276 {ECO:0000313|RefSeq:XP_013401462.1} gi|999968878|gb|KXJ08052.1|hypothetical protein AC249_AIPGENE18726 [Exaiptasia pallida], 1e-36
other nr_hits gi|999967367|gb|KXJ06541.1|hypothetical protein AC249_AIPGENE19514, partial [Exaiptasia pallida] 7e-36; gi|1005446277|ref|XP_015760437.1|PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107339634 [Acropora digitifera] 2e-34; gi|999970493|gb|KXJ09667.1|hypothetical protein AC249_AIPGENE14000 [Exaiptasia pallida] 4e-34; gi|999990131|gb|KXJ29159.1|hypothetical protein AC249_AIPGENE16974 [Exaiptasia pallida] 5e-34; gi|1005452781|ref|XP_015763547.1|PREDICTED: uncharacterized protein LOC107342556 [Acropora digitifera] 3e-33; gi|1005476685|ref|XP_015775108.1|PREDICTED: uncharacterized protein LOC107353288 [Acropora digitifera] 9e-33; gi|1005486916|ref|XP_015780051.1|PREDICTED: uncharacterized protein LOC107357929 [Acropora digitifera] 9e-33; gi|1005429549|ref|XP_015752509.1|PREDICTED: uncharacterized protein LOC107332295 [Acropora digitifera] 9e-33; gi|999967025|gb|KXJ06199.1|hypothetical protein AC249_AIPGENE11268 [Exaiptasia pallida] 4e-32;
NvERTx.4.122257 R-2 0.999905906465 E-8 0.99982889912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122260 R-2 0.999905906465 E-8 0.99982889912 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.16226 R-2 0.99990535296 E-6 0.990021132848 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76405 R-2 0.999905304508 E-5 0.988852694678 P31579 Low choriolytic enzyme gi|156406749|ref|XP_001641207.1|predicted protein [Nematostella vectensis], 3e-93
other nr_hits gi|1005490260|ref|XP_015747846.1|PREDICTED: zinc metalloproteinase nas-15-like [Acropora digitifera] 6e-50; gi|919007950|ref|XP_013388812.1|PREDICTED: zinc metalloproteinase nas-23-like [Lingula anatina] 1e-42; gi|919032901|ref|XP_013400122.1|PREDICTED: low choriolytic enzyme-like [Lingula anatina] 2e-42; gi|999977300|gb|KXJ16474.1|Zinc metalloproteinase nas-13 [Exaiptasia pallida] 1e-41; gi|919007938|ref|XP_013388808.1|PREDICTED: bone morphogenetic protein 1-like isoform X1 [Lingula anatina] 7e-41; gi|919007941|ref|XP_013388809.1|PREDICTED: zinc metalloproteinase nas-7-like isoform X2 [Lingula anatina] 7e-41; gi|919032875|ref|XP_013400108.1|PREDICTED: bone morphogenetic protein 1-like isoform X1 [Lingula anatina] 7e-41; gi|919032877|ref|XP_013400109.1|PREDICTED: zinc metalloproteinase nas-7-like isoform X2 [Lingula anatina] 7e-41; gi|1005450153|ref|XP_015762281.1|PREDICTED: zinc metalloproteinase nas-13-like [Acropora digitifera] 1e-38;
NvERTx.4.76406 R-2 0.999905304508 E-5 0.988852694678 P31579 Low choriolytic enzyme gi|156406749|ref|XP_001641207.1|predicted protein [Nematostella vectensis], 3e-93
other nr_hits gi|1005490260|ref|XP_015747846.1|PREDICTED: zinc metalloproteinase nas-15-like [Acropora digitifera] 7e-50; gi|919007950|ref|XP_013388812.1|PREDICTED: zinc metalloproteinase nas-23-like [Lingula anatina] 1e-42; gi|919032901|ref|XP_013400122.1|PREDICTED: low choriolytic enzyme-like [Lingula anatina] 2e-42; gi|999977300|gb|KXJ16474.1|Zinc metalloproteinase nas-13 [Exaiptasia pallida] 2e-41; gi|919007938|ref|XP_013388808.1|PREDICTED: bone morphogenetic protein 1-like isoform X1 [Lingula anatina] 8e-41; gi|919007941|ref|XP_013388809.1|PREDICTED: zinc metalloproteinase nas-7-like isoform X2 [Lingula anatina] 8e-41; gi|919032875|ref|XP_013400108.1|PREDICTED: bone morphogenetic protein 1-like isoform X1 [Lingula anatina] 8e-41; gi|919032877|ref|XP_013400109.1|PREDICTED: zinc metalloproteinase nas-7-like isoform X2 [Lingula anatina] 8e-41; gi|1005450153|ref|XP_015762281.1|PREDICTED: zinc metalloproteinase nas-13-like [Acropora digitifera] 1e-38;
NvERTx.4.44653 R-2 0.999903781076 E-6 0.999999996956 Q4LBB9 Octopamine receptor beta-2R gi|156615298|ref|XP_001647516.1|predicted protein [Nematostella vectensis], 2e-24
other nr_hits gi|1005428899|ref|XP_015752178.1|PREDICTED: high-affinity lysophosphatidic acid receptor-like [Acropora digitifera] 5e-16; gi|999981999|gb|KXJ21153.1|rhodopsin [Exaiptasia pallida] 1e-14;
NvERTx.4.44654 R-2 0.999903781076 E-6 0.999999996956 Q13639 5-hydroxytryptamine receptor 4 gi|156615298|ref|XP_001647516.1|predicted protein [Nematostella vectensis], 1e-170
other nr_hits gi|999981999|gb|KXJ21153.1|rhodopsin [Exaiptasia pallida] 3e-103; gi|1005428899|ref|XP_015752178.1|PREDICTED: high-affinity lysophosphatidic acid receptor-like [Acropora digitifera] 5e-100; gi|156347675|ref|XP_001621712.1|hypothetical protein NEMVEDRAFT_v1g1652 [Nematostella vectensis] 3e-33; gi|156359904|ref|XP_001625003.1|predicted protein [Nematostella vectensis] 7e-33; gi|1005438345|ref|XP_015756572.1|PREDICTED: neuropeptide FF receptor 1-like [Acropora digitifera] 1e-32; gi|926641032|ref|XP_013786636.1|PREDICTED: alpha-2Db adrenergic receptor-like, partial [Limulus polyphemus] 1e-32; gi|1043315238|gb|ANS11588.1|adrenergic receptor 2-like protein [Saccoglossus kowalevskii] 2e-32; gi|585677001|ref|XP_002736833.2|PREDICTED: beta-1 adrenergic receptor-like [Saccoglossus kowalevskii] 2e-32; gi|1009563481|ref|XP_015914660.1|PREDICTED: trace amine-associated receptor 1-like [Parasteatoda tepidariorum] 7e-32;
NvERTx.4.44655 R-2 0.999903781076 E-6 0.999999996956 No_Uniprotmatch No_Description gi|156615298|ref|XP_001647516.1|predicted protein [Nematostella vectensis], 1e-19
other nr_hits NA
NvERTx.4.158680 R-2 0.999901997275 E-6 0.999861818929 Q9CZR2 N-acetylated-alpha-linked acidic dipeptidase 2 gi|156388823|ref|XP_001634692.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999987238|gb|KXJ26357.1|Glutamate carboxypeptidase 2 [Exaiptasia pallida] 8e-177; gi|1005446793|ref|XP_015760684.1|PREDICTED: glutamate carboxypeptidase 2-like [Acropora digitifera] 6e-172; gi|999978322|gb|KXJ17496.1|Glutamate carboxypeptidase 2 [Exaiptasia pallida] 2e-150; gi|156391895|ref|XP_001635785.1|predicted protein [Nematostella vectensis] 2e-139; gi|696996062|ref|XP_009564685.1|PREDICTED: N-acetylated-alpha-linked acidic dipeptidase 2 [Cuculus canorus] 2e-132; gi|514788920|ref|XP_005029624.1|PREDICTED: N-acetylated-alpha-linked acidic dipeptidase 2 isoform X1 [Anas platyrhynchos] 3e-132; gi|483499176|gb|EOA94301.1|N-acetylated-alpha-linked acidic dipeptidase 2, partial [Anas platyrhynchos] 3e-132; gi|513166302|ref|XP_004938937.1|PREDICTED: N-acetylated-alpha-linked acidic dipeptidase 2 isoform X2 [Gallus gallus] 4e-132; gi|118085213|ref|XP_417204.2|PREDICTED: N-acetylated-alpha-linked acidic dipeptidase 2 isoform X1 [Gallus gallus] 4e-132;
NvERTx.4.158681 R-2 0.999901997275 E-6 0.999861818929 Q9CZR2 N-acetylated-alpha-linked acidic dipeptidase 2 gi|156388823|ref|XP_001634692.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999987238|gb|KXJ26357.1|Glutamate carboxypeptidase 2 [Exaiptasia pallida] 8e-177; gi|1005446793|ref|XP_015760684.1|PREDICTED: glutamate carboxypeptidase 2-like [Acropora digitifera] 6e-172; gi|999978322|gb|KXJ17496.1|Glutamate carboxypeptidase 2 [Exaiptasia pallida] 2e-150; gi|156391895|ref|XP_001635785.1|predicted protein [Nematostella vectensis] 2e-139; gi|696996062|ref|XP_009564685.1|PREDICTED: N-acetylated-alpha-linked acidic dipeptidase 2 [Cuculus canorus] 2e-132; gi|514788920|ref|XP_005029624.1|PREDICTED: N-acetylated-alpha-linked acidic dipeptidase 2 isoform X1 [Anas platyrhynchos] 3e-132; gi|483499176|gb|EOA94301.1|N-acetylated-alpha-linked acidic dipeptidase 2, partial [Anas platyrhynchos] 3e-132; gi|513166302|ref|XP_004938937.1|PREDICTED: N-acetylated-alpha-linked acidic dipeptidase 2 isoform X2 [Gallus gallus] 4e-132; gi|118085213|ref|XP_417204.2|PREDICTED: N-acetylated-alpha-linked acidic dipeptidase 2 isoform X1 [Gallus gallus] 4e-132;
NvERTx.4.230387 R-2 0.999901827446 E-3 0.966026062444 No_Uniprotmatch No_Description gi|156386621|ref|XP_001634010.1|predicted protein [Nematostella vectensis], 6e-10
other nr_hits gi|999970574|gb|KXJ09748.1|hypothetical protein AC249_AIPGENE2754 [Exaiptasia pallida] 2e-05;
NvERTx.4.119388 R-2 0.999901827446 E-3 0.966026062444 No_Uniprotmatch No_Description gi|156386621|ref|XP_001634010.1|predicted protein [Nematostella vectensis], 4e-36
other nr_hits NA
NvERTx.4.119389 R-2 0.999901827446 E-3 0.966026062444 A0A1D2NFK8_ORCCI Paternally-expressed protein {ECO:0000313|EMBL:ODN03756.1} gi|156386621|ref|XP_001634010.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|1061486664|gb|ODN03756.1|Paternally-expressed protein [Orchesella cincta] 2e-05; gi|969521785|ref|XP_002135479.2|uncharacterized protein Dpse_GA28568 [Drosophila pseudoobscura pseudoobscura] 3e-05;
NvERTx.4.119398 R-2 0.999901827446 E-3 0.966026062444 No_Uniprotmatch No_Description gi|156386621|ref|XP_001634010.1|predicted protein [Nematostella vectensis], 1e-28
other nr_hits NA
NvERTx.4.209560 R-2 0.999901827446 E-3 0.966026062444 No_Uniprotmatch No_Description gi|156386621|ref|XP_001634010.1|predicted protein [Nematostella vectensis], 8e-35
other nr_hits NA
NvERTx.4.219923 R-2 0.999901827446 E-3 0.966026062444 No_Uniprotmatch No_Description gi|156386621|ref|XP_001634010.1|predicted protein [Nematostella vectensis], 7e-90
other nr_hits NA
NvERTx.4.221884 R-2 0.999901827446 E-3 0.966026062444 No_Uniprotmatch No_Description gi|156386621|ref|XP_001634010.1|predicted protein [Nematostella vectensis], 2e-40
other nr_hits NA
NvERTx.4.14556 R-2 0.99989967622 E-6 0.999999740268 P02458 Collagen alpha-1(II) chain {ECO:0000305} None
other nr_hits NA
NvERTx.4.132545 R-2 0.99989967622 E-6 0.999999740268 P25940 Collagen alpha-3(V) chain None
other nr_hits NA
NvERTx.4.132546 R-2 0.99989967622 E-6 0.999999740268 Q5QNQ9 Collagen alpha-1(XXVII) chain None
other nr_hits NA
NvERTx.4.132548 R-2 0.99989967622 E-6 0.999999740268 P32017 Collagen alpha-3(IX) chain None
other nr_hits NA
NvERTx.4.132557 R-2 0.99989967622 E-6 0.999999740268 P08121 Collagen alpha-1(III) chain None
other nr_hits NA
NvERTx.4.132558 R-2 0.99989967622 E-6 0.999999740268 P25940 Collagen alpha-3(V) chain gi|156406486|ref|XP_001641076.1|predicted protein [Nematostella vectensis], 9e-12
other nr_hits NA
NvERTx.4.132549 R-2 0.99989967622 E-6 0.999999740268 P25940 Collagen alpha-3(V) chain gi|156406486|ref|XP_001641076.1|predicted protein [Nematostella vectensis], 2e-12
other nr_hits NA
NvERTx.4.132550 R-2 0.99989967622 E-6 0.999999740268 P08121 Collagen alpha-1(III) chain None
other nr_hits NA
NvERTx.4.16935 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.16936 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.36803 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.50817 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.50818 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.57412 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description gi|156386663|ref|XP_001634031.1|predicted protein [Nematostella vectensis], 3e-13
other nr_hits NA
NvERTx.4.57413 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description gi|156386663|ref|XP_001634031.1|predicted protein [Nematostella vectensis], 5e-19
other nr_hits NA
NvERTx.4.57414 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.57415 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.57416 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description gi|156386663|ref|XP_001634031.1|predicted protein [Nematostella vectensis], 3e-13
other nr_hits NA
NvERTx.4.57417 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description gi|156386663|ref|XP_001634031.1|predicted protein [Nematostella vectensis], 4e-19
other nr_hits NA
NvERTx.4.57418 R-2 0.999898855281 E-8 0.999998316086 No_Uniprotmatch No_Description None
other nr_hits NA
More