#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.84272 R-2 0.223450937654 E-8 0.999989404152 Q99538 Legumain gi|156359834|ref|XP_001624969.1|predicted protein [Nematostella vectensis], 9e-251
other nr_hits gi|1005489709|ref|XP_015747571.1|PREDICTED: legumain-like [Acropora digitifera] 6e-131; gi|919042013|ref|XP_013404249.1|PREDICTED: legumain-like [Lingula anatina] 1e-128; gi|919020804|ref|XP_013394313.1|PREDICTED: legumain-like [Lingula anatina] 2e-128; gi|1126186097|ref|XP_019625746.1|PREDICTED: legumain-like [Branchiostoma belcheri] 3e-125; gi|585696079|ref|XP_006822143.1|PREDICTED: LOW QUALITY PROTEIN: legumain-like [Saccoglossus kowalevskii] 2e-124; gi|732664732|gb|AIZ77505.1|legumain-protease-precursor [Platynereis dumerilii] 5e-121; gi|260818781|ref|XP_002604561.1|hypothetical protein BRAFLDRAFT_280591 [Branchiostoma floridae] 1e-118; gi|957833409|ref|XP_014666763.1|PREDICTED: legumain-like [Priapulus caudatus] 1e-118; gi|658914688|ref|XP_008397176.1|PREDICTED: legumain [Poecilia reticulata] 1e-117;
NvERTx.4.84271 R-2 0.223450937654 E-8 0.999989404152 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.26167 R-2 0.181494448917 E-6 0.999999999923 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.29283 R-2 0.181494448917 E-6 0.999999999923 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.44155 R-2 0.181494448917 E-6 0.999999999923 No_Uniprotmatch No_Description gi|156361221|ref|XP_001625417.1|predicted protein [Nematostella vectensis], 3e-74
other nr_hits gi|156363702|ref|XP_001626180.1|predicted protein [Nematostella vectensis] 6e-54; gi|156392674|ref|XP_001636173.1|predicted protein [Nematostella vectensis] 6e-54; gi|999968687|gb|KXJ07861.1|hypothetical protein AC249_AIPGENE9596 [Exaiptasia pallida] 4e-53; gi|999969874|gb|KXJ09048.1|hypothetical protein AC249_AIPGENE26928 [Exaiptasia pallida] 2e-51; gi|156403776|ref|XP_001640084.1|predicted protein [Nematostella vectensis] 5e-50; gi|156366301|ref|XP_001627077.1|predicted protein [Nematostella vectensis] 1e-49; gi|156398391|ref|XP_001638172.1|predicted protein [Nematostella vectensis] 8e-49; gi|156347623|ref|XP_001621694.1|hypothetical protein NEMVEDRAFT_v1g248650 [Nematostella vectensis] 2e-48; gi|156376664|ref|XP_001630479.1|predicted protein [Nematostella vectensis] 1e-46;
NvERTx.4.44156 R-2 0.181494448917 E-6 0.999999999923 R7T3W7_CAPTE Uncharacterized protein {ECO:0000313|EMBL:ELT87391.1, ECO:0000313|EnsemblMetazoa:CapteP97213} gi|999968687|gb|KXJ07861.1|hypothetical protein AC249_AIPGENE9596 [Exaiptasia pallida], 5e-44
other nr_hits gi|156398391|ref|XP_001638172.1|predicted protein [Nematostella vectensis] 9e-43; gi|999969874|gb|KXJ09048.1|hypothetical protein AC249_AIPGENE26928 [Exaiptasia pallida] 7e-42; gi|999967139|gb|KXJ06313.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 1e-41; gi|443682988|gb|ELT87391.1|hypothetical protein CAPTEDRAFT_97213, partial [Capitella teleta] 9e-29; gi|443726713|gb|ELU13788.1|hypothetical protein CAPTEDRAFT_213858 [Capitella teleta] 2e-28; gi|443704744|gb|ELU01646.1|hypothetical protein CAPTEDRAFT_113196 [Capitella teleta] 5e-28; gi|443725320|gb|ELU12970.1|hypothetical protein CAPTEDRAFT_139346, partial [Capitella teleta] 5e-28; gi|443719962|gb|ELU09864.1|hypothetical protein CAPTEDRAFT_73481, partial [Capitella teleta] 5e-28; gi|443726038|gb|ELU13371.1|hypothetical protein CAPTEDRAFT_191639 [Capitella teleta] 2e-27;
NvERTx.4.44157 R-2 0.181494448917 E-6 0.999999999923 R7UTM0_CAPTE Uncharacterized protein {ECO:0000313|EMBL:ELU09864.1, ECO:0000313|EnsemblMetazoa:CapteP73481} gi|156361221|ref|XP_001625417.1|predicted protein [Nematostella vectensis], 5e-34
other nr_hits gi|999968687|gb|KXJ07861.1|hypothetical protein AC249_AIPGENE9596 [Exaiptasia pallida] 6e-25; gi|999969874|gb|KXJ09048.1|hypothetical protein AC249_AIPGENE26928 [Exaiptasia pallida] 4e-24; gi|156363702|ref|XP_001626180.1|predicted protein [Nematostella vectensis] 5e-24; gi|156392674|ref|XP_001636173.1|predicted protein [Nematostella vectensis] 5e-24; gi|156347623|ref|XP_001621694.1|hypothetical protein NEMVEDRAFT_v1g248650 [Nematostella vectensis] 2e-22; gi|156398391|ref|XP_001638172.1|predicted protein [Nematostella vectensis] 8e-22; gi|156403776|ref|XP_001640084.1|predicted protein [Nematostella vectensis] 2e-21; gi|156366301|ref|XP_001627077.1|predicted protein [Nematostella vectensis] 2e-21; gi|156376664|ref|XP_001630479.1|predicted protein [Nematostella vectensis] 1e-18;
NvERTx.4.60395 R-2 0.181494448917 E-6 0.999999999923 No_Uniprotmatch No_Description gi|999969874|gb|KXJ09048.1|hypothetical protein AC249_AIPGENE26928 [Exaiptasia pallida], 1e-153
other nr_hits gi|999968687|gb|KXJ07861.1|hypothetical protein AC249_AIPGENE9596 [Exaiptasia pallida] 2e-146; gi|156403776|ref|XP_001640084.1|predicted protein [Nematostella vectensis] 4e-140; gi|156363702|ref|XP_001626180.1|predicted protein [Nematostella vectensis] 4e-133; gi|156405254|ref|XP_001640647.1|predicted protein [Nematostella vectensis] 9e-133; gi|156354102|ref|XP_001623241.1|predicted protein [Nematostella vectensis] 1e-131; gi|156398391|ref|XP_001638172.1|predicted protein [Nematostella vectensis] 3e-122; gi|156366301|ref|XP_001627077.1|predicted protein [Nematostella vectensis] 4e-121; gi|156347623|ref|XP_001621694.1|hypothetical protein NEMVEDRAFT_v1g248650 [Nematostella vectensis] 7e-114; gi|156361221|ref|XP_001625417.1|predicted protein [Nematostella vectensis] 2e-100;
NvERTx.4.60396 R-2 0.181494448917 E-6 0.999999999923 No_Uniprotmatch No_Description gi|156361221|ref|XP_001625417.1|predicted protein [Nematostella vectensis], 4e-21
other nr_hits gi|999968687|gb|KXJ07861.1|hypothetical protein AC249_AIPGENE9596 [Exaiptasia pallida] 4e-18; gi|999969874|gb|KXJ09048.1|hypothetical protein AC249_AIPGENE26928 [Exaiptasia pallida] 7e-18; gi|156347623|ref|XP_001621694.1|hypothetical protein NEMVEDRAFT_v1g248650 [Nematostella vectensis] 1e-17; gi|156398391|ref|XP_001638172.1|predicted protein [Nematostella vectensis] 2e-16; gi|156366301|ref|XP_001627077.1|predicted protein [Nematostella vectensis] 5e-16; gi|156363702|ref|XP_001626180.1|predicted protein [Nematostella vectensis] 7e-15; gi|156392674|ref|XP_001636173.1|predicted protein [Nematostella vectensis] 7e-15; gi|156336255|ref|XP_001619675.1|hypothetical protein NEMVEDRAFT_v1g223943 [Nematostella vectensis] 1e-13; gi|156376664|ref|XP_001630479.1|predicted protein [Nematostella vectensis] 2e-13;
NvERTx.4.76234 R-2 0.181494448917 E-6 0.999999999923 No_Uniprotmatch No_Description gi|999969874|gb|KXJ09048.1|hypothetical protein AC249_AIPGENE26928 [Exaiptasia pallida], 1e-37
other nr_hits gi|999968687|gb|KXJ07861.1|hypothetical protein AC249_AIPGENE9596 [Exaiptasia pallida] 3e-37;
NvERTx.4.76212 R-2 0.181494448917 E-6 0.999999999923 No_Uniprotmatch No_Description gi|156361221|ref|XP_001625417.1|predicted protein [Nematostella vectensis], 4e-60
other nr_hits gi|156381243|ref|XP_001632175.1|predicted protein [Nematostella vectensis] 2e-53; gi|999967136|gb|KXJ06310.1|hypothetical protein AC249_AIPGENE3336 [Exaiptasia pallida] 8e-45; gi|156366093|ref|XP_001626975.1|predicted protein [Nematostella vectensis] 4e-40; gi|156397384|ref|XP_001637871.1|predicted protein [Nematostella vectensis] 2e-38; gi|999969874|gb|KXJ09048.1|hypothetical protein AC249_AIPGENE26928 [Exaiptasia pallida] 2e-37; gi|999968687|gb|KXJ07861.1|hypothetical protein AC249_AIPGENE9596 [Exaiptasia pallida] 2e-37; gi|156385615|ref|XP_001633725.1|predicted protein [Nematostella vectensis] 1e-34; gi|999986472|gb|KXJ25609.1|hypothetical protein AC249_AIPGENE6358 [Exaiptasia pallida] 1e-23; gi|999969642|gb|KXJ08816.1|hypothetical protein AC249_AIPGENE11022 [Exaiptasia pallida] 5e-23;
NvERTx.4.95272 R-2 0.181494448917 E-6 0.999999999923 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204886 R-2 0.181494448917 E-6 0.999999999923 No_Uniprotmatch No_Description gi|156355042|ref|XP_001623485.1|predicted protein [Nematostella vectensis], 5e-05
other nr_hits NA
NvERTx.4.128706 R-2 0.171314451355 E-4 0.532340336482 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.128713 R-2 0.171314451355 E-4 0.532340336482 No_Uniprotmatch No_Description None
other nr_hits NA