#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.71569 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71570 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71571 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76802 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76803 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84933 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84943 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84944 R-2 0.492212387262 E-1 0.998331233005 Q5ZLD2 DEP domain-containing protein 1B gi|156382567|ref|XP_001632624.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999981677|gb|KXJ20851.1|DEP domain-containing protein 1B [Exaiptasia pallida] 2e-166; gi|585659440|ref|XP_006816188.1|PREDICTED: DEP domain-containing protein 1B-like isoform X1 [Saccoglossus kowalevskii] 7e-74; gi|585659444|ref|XP_006816189.1|PREDICTED: DEP domain-containing protein 1B-like isoform X2 [Saccoglossus kowalevskii] 1e-73; gi|641695237|ref|XP_008160068.1|PREDICTED: DEP domain-containing protein 1B isoform X1 [Eptesicus fuscus] 3e-68; gi|61098398|ref|NP_001012946.1|DEP domain-containing protein 1A [Gallus gallus] 6e-68; gi|1121821089|ref|XP_019387155.1|PREDICTED: DEP domain-containing protein 1A isoform X2 [Crocodylus porosus] 7e-68; gi|558097561|ref|XP_006081490.1|PREDICTED: DEP domain-containing protein 1B isoform X1 [Myotis lucifugus] 7e-68; gi|586541934|ref|XP_006906108.1|PREDICTED: DEP domain-containing protein 1B [Pteropus alecto] 7e-68; gi|507936302|ref|XP_004679167.1|PREDICTED: DEP domain-containing protein 1A isoform X2 [Condylura cristata] 1e-67;
NvERTx.4.106296 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.127938 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131890 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.135288 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.135289 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156463 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159928 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170534 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171478 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.175665 R-2 0.492212387262 E-1 0.998331233005 NA NA None
other nr_hits NA
NvERTx.4.175666 R-2 0.492212387262 E-1 0.998331233005 NA NA None
other nr_hits NA
NvERTx.4.175669 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177550 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177551 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177555 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177557 R-2 0.492212387262 E-1 0.998331233005 Q96MB7 Putative nuclease HARBI1 gi|1005432607|ref|XP_015753868.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera], 3e-21
other nr_hits gi|1005470087|ref|XP_015771926.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 2e-20; gi|1005484513|ref|XP_015778896.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 1e-16; gi|1005482540|ref|XP_015777960.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 1e-14; gi|1139853978|ref|XP_019921100.1|PREDICTED: putative nuclease HARBI1 [Crassostrea gigas] 4e-14; gi|1005491478|ref|XP_015748414.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 1e-13; gi|1005466433|ref|XP_015770195.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 2e-13; gi|1005420830|ref|XP_015759021.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 3e-13; gi|919084479|ref|XP_013379511.1|PREDICTED: putative nuclease HARBI1 [Lingula anatina] 4e-12; gi|919004744|ref|XP_013381198.1|PREDICTED: putative nuclease HARBI1 [Lingula anatina] 3e-11;
NvERTx.4.177556 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185653 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185654 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185655 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185657 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185658 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185659 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185661 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185662 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185663 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199933 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202720 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.19125 R-2 0.491149170636 E-4 1.0 A6W0X8 Malonyl-[acyl-carrier protein] O-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00835} gi|1005447613|ref|XP_015761089.1|PREDICTED: aklanonic acid methyltransferase DauC-like [Acropora digitifera], 5e-30
other nr_hits gi|1005449759|ref|XP_015762089.1|PREDICTED: juvenile hormone acid O-methyltransferase-like [Acropora digitifera] 5e-30; gi|1005447691|ref|XP_015761130.1|PREDICTED: aklanonic acid methyltransferase DauC-like [Acropora digitifera] 2e-27; gi|1005481209|ref|XP_015777324.1|PREDICTED: ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE-like [Acropora digitifera] 4e-26; gi|1005481194|ref|XP_015777316.1|PREDICTED: ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE-like [Acropora digitifera] 9e-26; gi|1005447695|ref|XP_015761132.1|PREDICTED: ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE-like [Acropora digitifera] 2e-24; gi|761914626|ref|XP_011406396.1|PREDICTED: uncharacterized protein LOC105314124 [Amphimedon queenslandica] 1e-23; gi|1133455320|ref|XP_019849490.1|PREDICTED: uncharacterized protein LOC109580592 [Amphimedon queenslandica] 4e-21; gi|761919736|ref|XP_011408779.1|PREDICTED: uncharacterized protein LOC105315737 [Amphimedon queenslandica] 2e-20; gi|761916044|ref|XP_011407038.1|PREDICTED: uncharacterized protein LOC105314521 [Amphimedon queenslandica] 4e-20;
NvERTx.4.118393 R-2 0.491149170636 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118394 R-2 0.491149170636 E-4 1.0 Q99PR0 Protein O-mannosyl-transferase 1 gi|156352969|ref|XP_001622853.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|1126218852|ref|XP_019643544.1|PREDICTED: protein O-mannosyl-transferase 1-like [Branchiostoma belcheri] 8e-222; gi|1005431033|ref|XP_015753230.1|PREDICTED: protein O-mannosyl-transferase 1-like [Acropora digitifera] 1e-210; gi|817087741|ref|XP_012266663.1|PREDICTED: protein O-mannosyltransferase 1 [Athalia rosae] 2e-205; gi|936576494|ref|XP_014220042.1|PREDICTED: protein O-mannosyltransferase 1 [Copidosoma floridanum] 2e-205; gi|999979519|gb|KXJ18693.1|Protein O-mannosyl-transferase 1 [Exaiptasia pallida] 1e-203; gi|762097023|ref|XP_011431067.1|PREDICTED: protein O-mannosyl-transferase 1-like [Crassostrea gigas] 1e-203; gi|405969371|gb|EKC34345.1|Protein O-mannosyltransferase 1 [Crassostrea gigas] 1e-203; gi|908441974|ref|XP_013079380.1|PREDICTED: protein O-mannosyl-transferase 1-like [Biomphalaria glabrata] 1e-203; gi|91094823|ref|XP_971065.1|PREDICTED: protein O-mannosyltransferase 1 [Tribolium castaneum] 2e-203;
NvERTx.4.118395 R-2 0.491149170636 E-4 1.0 Q9Y6A1 Protein O-mannosyl-transferase 1 gi|156352969|ref|XP_001622853.1|predicted protein [Nematostella vectensis], 2e-181
other nr_hits gi|999966335|gb|KXJ05511.1|Protein O-mannosyltransferase 1, partial [Exaiptasia pallida] 1e-106; gi|1005431033|ref|XP_015753230.1|PREDICTED: protein O-mannosyl-transferase 1-like [Acropora digitifera] 6e-95; gi|1126218852|ref|XP_019643544.1|PREDICTED: protein O-mannosyl-transferase 1-like [Branchiostoma belcheri] 2e-89; gi|908441974|ref|XP_013079380.1|PREDICTED: protein O-mannosyl-transferase 1-like [Biomphalaria glabrata] 4e-79; gi|585721104|ref|XP_006813212.1|PREDICTED: protein O-mannosyl-transferase 1-like [Saccoglossus kowalevskii] 8e-79; gi|936576494|ref|XP_014220042.1|PREDICTED: protein O-mannosyltransferase 1 [Copidosoma floridanum] 2e-78; gi|91094823|ref|XP_971065.1|PREDICTED: protein O-mannosyltransferase 1 [Tribolium castaneum] 2e-77; gi|156538270|ref|XP_001603023.1|PREDICTED: protein O-mannosyltransferase 1 [Nasonia vitripennis] 5e-77; gi|954576057|ref|XP_014612434.1|PREDICTED: protein O-mannosyltransferase 1 isoform X1 [Polistes canadensis] 5e-77;
NvERTx.4.118396 R-2 0.491149170636 E-4 1.0 Q99PR0 Protein O-mannosyl-transferase 1 gi|156352969|ref|XP_001622853.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|1126218852|ref|XP_019643544.1|PREDICTED: protein O-mannosyl-transferase 1-like [Branchiostoma belcheri] 8e-223; gi|1005431033|ref|XP_015753230.1|PREDICTED: protein O-mannosyl-transferase 1-like [Acropora digitifera] 2e-210; gi|908441974|ref|XP_013079380.1|PREDICTED: protein O-mannosyl-transferase 1-like [Biomphalaria glabrata] 4e-207; gi|999979519|gb|KXJ18693.1|Protein O-mannosyl-transferase 1 [Exaiptasia pallida] 6e-207; gi|817087741|ref|XP_012266663.1|PREDICTED: protein O-mannosyltransferase 1 [Athalia rosae] 1e-206; gi|936576494|ref|XP_014220042.1|PREDICTED: protein O-mannosyltransferase 1 [Copidosoma floridanum] 2e-206; gi|762097023|ref|XP_011431067.1|PREDICTED: protein O-mannosyl-transferase 1-like [Crassostrea gigas] 1e-204; gi|405969371|gb|EKC34345.1|Protein O-mannosyltransferase 1 [Crassostrea gigas] 4e-204; gi|91094823|ref|XP_971065.1|PREDICTED: protein O-mannosyltransferase 1 [Tribolium castaneum] 4e-204;
NvERTx.4.118397 R-2 0.491149170636 E-4 1.0 Q9VTK2 Protein O-mannosyltransferase 1 gi|156352969|ref|XP_001622853.1|predicted protein [Nematostella vectensis], 3e-113
other nr_hits gi|999966335|gb|KXJ05511.1|Protein O-mannosyltransferase 1, partial [Exaiptasia pallida] 1e-78; gi|1126218852|ref|XP_019643544.1|PREDICTED: protein O-mannosyl-transferase 1-like [Branchiostoma belcheri] 2e-57; gi|260828759|ref|XP_002609330.1|hypothetical protein BRAFLDRAFT_244620 [Branchiostoma floridae] 2e-55; gi|1005431033|ref|XP_015753230.1|PREDICTED: protein O-mannosyl-transferase 1-like [Acropora digitifera] 2e-48; gi|908441974|ref|XP_013079380.1|PREDICTED: protein O-mannosyl-transferase 1-like [Biomphalaria glabrata] 7e-47; gi|936576494|ref|XP_014220042.1|PREDICTED: protein O-mannosyltransferase 1 [Copidosoma floridanum] 1e-46; gi|762097023|ref|XP_011431067.1|PREDICTED: protein O-mannosyl-transferase 1-like [Crassostrea gigas] 3e-45; gi|405969371|gb|EKC34345.1|Protein O-mannosyltransferase 1 [Crassostrea gigas] 3e-45; gi|156538270|ref|XP_001603023.1|PREDICTED: protein O-mannosyltransferase 1 [Nasonia vitripennis] 1e-44;
NvERTx.4.220484 R-2 0.491149170636 E-4 1.0 Q9Y6A1 Protein O-mannosyl-transferase 1 gi|156352969|ref|XP_001622853.1|predicted protein [Nematostella vectensis], 8e-44
other nr_hits gi|1005431033|ref|XP_015753230.1|PREDICTED: protein O-mannosyl-transferase 1-like [Acropora digitifera] 7e-32; gi|1058104221|gb|JAS55760.1|hypothetical protein g.2979, partial [Cuerna arida] 9e-24; gi|1058171346|gb|JAS89321.1|hypothetical protein g.54973, partial [Homalodisca liturata] 1e-23; gi|585721104|ref|XP_006813212.1|PREDICTED: protein O-mannosyl-transferase 1-like [Saccoglossus kowalevskii] 2e-23; gi|1058216820|gb|JAT11926.1|hypothetical protein g.11849 [Graphocephala atropunctata] 3e-23; gi|828213133|ref|XP_002170095.3|PREDICTED: protein O-mannosyl-transferase 1-like, partial [Hydra vulgaris] 3e-23; gi|546677054|gb|ERL87963.1|hypothetical protein D910_05351 [Dendroctonus ponderosae] 7e-23; gi|478258332|gb|ENN78451.1|hypothetical protein YQE_05089, partial [Dendroctonus ponderosae] 7e-23; gi|1130222005|ref|XP_019757677.1|PREDICTED: protein O-mannosyltransferase 1 [Dendroctonus ponderosae] 7e-23;
NvERTx.4.228992 R-2 0.491149170636 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137157 R-2 0.490248330667 E-6 0.999996819041 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137166 R-2 0.490248330667 E-6 0.999996819041 B3RYB8_TRIAD Putative uncharacterized protein {ECO:0000313|EMBL:EDV24572.1} gi|1005467128|ref|XP_015770521.1|PREDICTED: uncharacterized protein LOC107348942 [Acropora digitifera], 1e-33
other nr_hits gi|999970566|gb|KXJ09740.1|Serine/threonine-protein kinase PknD [Exaiptasia pallida] 2e-32; gi|999968314|gb|KXJ07488.1|Serine/threonine-protein kinase PknD [Exaiptasia pallida] 3e-32; gi|196005191|ref|XP_002112462.1|hypothetical protein TRIADDRAFT_56503 [Trichoplax adhaerens] 2e-13;
NvERTx.4.137168 R-2 0.490248330667 E-6 0.999996819041 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137159 R-2 0.490248330667 E-6 0.999996819041 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137161 R-2 0.490248330667 E-6 0.999996819041 No_Uniprotmatch No_Description gi|999970566|gb|KXJ09740.1|Serine/threonine-protein kinase PknD [Exaiptasia pallida], 2e-16
other nr_hits gi|999968314|gb|KXJ07488.1|Serine/threonine-protein kinase PknD [Exaiptasia pallida] 4e-16; gi|1005467128|ref|XP_015770521.1|PREDICTED: uncharacterized protein LOC107348942 [Acropora digitifera] 4e-15;
NvERTx.4.49815 R-2 0.48757322571 E-1 0.999999912707 No_Uniprotmatch No_Description None
other nr_hits NA
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