#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

Search by gene name


Search by NvERTx ID





Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.63578 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.68768 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71959 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.78022 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description gi|156332944|ref|XP_001619328.1|hypothetical protein NEMVEDRAFT_v1g224293 [Nematostella vectensis], 1e-06
other nr_hits NA
NvERTx.4.78323 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.79005 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.88400 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.88402 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.89831 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.89832 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90647 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94708 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96284 R-1 0.958822634925 E-3 0.54526488788 O64411 Polyamine oxidase gi|999975215|gb|KXJ14389.1|Polyamine oxidase [Exaiptasia pallida], 6e-31
other nr_hits gi|999984093|gb|KXJ23234.1|Polyamine oxidase [Exaiptasia pallida] 2e-29; gi|999975224|gb|KXJ14398.1|Polyamine oxidase [Exaiptasia pallida] 2e-28; gi|999990104|gb|KXJ29132.1|Polyamine oxidase [Exaiptasia pallida] 2e-25; gi|999973017|gb|KXJ12191.1|Polyamine oxidase [Exaiptasia pallida] 5e-25; gi|1005422580|ref|XP_015767248.1|PREDICTED: polyamine oxidase-like isoform X2 [Acropora digitifera] 1e-24; gi|1005422583|ref|XP_015767254.1|PREDICTED: polyamine oxidase-like isoform X3 [Acropora digitifera] 1e-24; gi|1005422589|ref|XP_015767267.1|PREDICTED: polyamine oxidase-like isoform X5 [Acropora digitifera] 1e-24; gi|1005422578|ref|XP_015767243.1|PREDICTED: polyamine oxidase-like isoform X1 [Acropora digitifera] 2e-24; gi|1005422586|ref|XP_015767260.1|PREDICTED: polyamine oxidase-like isoform X4 [Acropora digitifera] 2e-24;
NvERTx.4.96285 R-1 0.958822634925 E-3 0.54526488788 O64411 Polyamine oxidase gi|999975215|gb|KXJ14389.1|Polyamine oxidase [Exaiptasia pallida], 6e-31
other nr_hits gi|999984093|gb|KXJ23234.1|Polyamine oxidase [Exaiptasia pallida] 2e-29; gi|999975224|gb|KXJ14398.1|Polyamine oxidase [Exaiptasia pallida] 2e-28; gi|999990104|gb|KXJ29132.1|Polyamine oxidase [Exaiptasia pallida] 2e-25; gi|999973017|gb|KXJ12191.1|Polyamine oxidase [Exaiptasia pallida] 5e-25; gi|1005422580|ref|XP_015767248.1|PREDICTED: polyamine oxidase-like isoform X2 [Acropora digitifera] 1e-24; gi|1005422583|ref|XP_015767254.1|PREDICTED: polyamine oxidase-like isoform X3 [Acropora digitifera] 1e-24; gi|1005422589|ref|XP_015767267.1|PREDICTED: polyamine oxidase-like isoform X5 [Acropora digitifera] 1e-24; gi|1005422578|ref|XP_015767243.1|PREDICTED: polyamine oxidase-like isoform X1 [Acropora digitifera] 2e-24; gi|1005422586|ref|XP_015767260.1|PREDICTED: polyamine oxidase-like isoform X4 [Acropora digitifera] 2e-24;
NvERTx.4.101338 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.127668 R-1 0.958822634925 E-3 0.54526488788 Q96AY4 Tetratricopeptide repeat protein 28 gi|156342046|ref|XP_001620860.1|hypothetical protein NEMVEDRAFT_v1g222634 [Nematostella vectensis], 9e-69
other nr_hits gi|156346795|ref|XP_001621532.1|hypothetical protein NEMVEDRAFT_v1g221878 [Nematostella vectensis] 8e-67; gi|156384208|ref|XP_001633223.1|predicted protein [Nematostella vectensis] 1e-59; gi|156341942|ref|XP_001620825.1|hypothetical protein NEMVEDRAFT_v1g222670 [Nematostella vectensis] 7e-50; gi|156396785|ref|XP_001637573.1|predicted protein [Nematostella vectensis] 4e-49; gi|156396813|ref|XP_001637587.1|predicted protein [Nematostella vectensis] 2e-48; gi|156386824|ref|XP_001634111.1|predicted protein [Nematostella vectensis] 3e-47; gi|156356414|ref|XP_001623919.1|predicted protein [Nematostella vectensis] 8e-46; gi|156356408|ref|XP_001623916.1|predicted protein [Nematostella vectensis] 3e-44; gi|156356406|ref|XP_001623915.1|predicted protein [Nematostella vectensis] 1e-43;
NvERTx.4.131582 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131583 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131588 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131589 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131590 R-1 0.958822634925 E-3 0.54526488788 Q06185 ATP synthase subunit e, mitochondrial gi|1005480775|ref|XP_015777119.1|PREDICTED: ATP synthase subunit e, mitochondrial-like, partial [Acropora digitifera], 3e-17
other nr_hits gi|999976976|gb|KXJ16150.1|ATP synthase subunit e, mitochondrial [Exaiptasia pallida] 5e-16; gi|975101790|ref|XP_015266054.1|PREDICTED: ATP synthase subunit e, mitochondrial-like [Gekko japonicus] 3e-07; gi|543727061|ref|XP_005504639.1|PREDICTED: ATP synthase subunit e, mitochondrial [Columba livia] 2e-06; gi|449280618|gb|EMC87864.1|ATP synthase subunit e, mitochondrial [Columba livia] 3e-06; gi|1033365891|ref|XP_008112789.2|PREDICTED: ATP synthase subunit e, mitochondrial [Anolis carolinensis] 5e-06; gi|641779057|ref|XP_008172424.1|PREDICTED: ATP synthase subunit e, mitochondrial [Chrysemys picta bellii] 5e-06; gi|542154960|ref|XP_005486321.1|PREDICTED: ATP synthase subunit e, mitochondrial [Zonotrichia albicollis] 6e-06; gi|527274755|ref|XP_005155112.1|PREDICTED: ATP synthase subunit e, mitochondrial [Melopsittacus undulatus] 6e-06; gi|348558587|ref|XP_003465099.1|PREDICTED: ATP synthase subunit e, mitochondrial [Cavia porcellus] 6e-06;
NvERTx.4.136001 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136015 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139489 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139490 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141204 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147984 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.148237 R-1 0.958822634925 E-3 0.54526488788 V3ZHE8_LOTGI Uncharacterized protein {ECO:0000313|EMBL:ESO83622.1} gi|999975114|gb|KXJ14288.1|Coiled-coil domain-containing protein 50 [Exaiptasia pallida], 5e-37
other nr_hits gi|1126217847|ref|XP_019642990.1|PREDICTED: uncharacterized protein LOC109484193 [Branchiostoma belcheri] 7e-16; gi|676491613|ref|XP_009065652.1|hypothetical protein LOTGIDRAFT_236477 [Lottia gigantea] 7e-16; gi|1080064465|ref|XP_018574364.1|PREDICTED: uncharacterized protein LOC108913316 [Anoplophora glabripennis] 3e-15; gi|260841811|ref|XP_002614104.1|hypothetical protein BRAFLDRAFT_67309 [Branchiostoma floridae] 3e-15; gi|662183238|ref|XP_008478679.1|PREDICTED: coiled-coil domain-containing protein 50 [Diaphorina citri] 8e-14; gi|198415484|ref|XP_002120528.1|PREDICTED: coiled-coil domain-containing protein 50 [Ciona intestinalis] 1e-13; gi|675386023|gb|KFM78920.1|Coiled-coil domain-containing protein 50, partial [Stegodyphus mimosarum] 3e-13; gi|1042253016|ref|XP_017333183.1|PREDICTED: coiled-coil domain-containing protein 50 isoform X1 [Ictalurus punctatus] 4e-13; gi|1042253021|ref|XP_017333184.1|PREDICTED: coiled-coil domain-containing protein 50 isoform X2 [Ictalurus punctatus] 4e-13;
NvERTx.4.148231 R-1 0.958822634925 E-3 0.54526488788 V3ZHE8_LOTGI Uncharacterized protein {ECO:0000313|EMBL:ESO83622.1} gi|999975114|gb|KXJ14288.1|Coiled-coil domain-containing protein 50 [Exaiptasia pallida], 2e-36
other nr_hits gi|1126217847|ref|XP_019642990.1|PREDICTED: uncharacterized protein LOC109484193 [Branchiostoma belcheri] 4e-16; gi|676491613|ref|XP_009065652.1|hypothetical protein LOTGIDRAFT_236477 [Lottia gigantea] 1e-15; gi|1080064465|ref|XP_018574364.1|PREDICTED: uncharacterized protein LOC108913316 [Anoplophora glabripennis] 3e-15; gi|260841811|ref|XP_002614104.1|hypothetical protein BRAFLDRAFT_67309 [Branchiostoma floridae] 3e-15; gi|662183238|ref|XP_008478679.1|PREDICTED: coiled-coil domain-containing protein 50 [Diaphorina citri] 1e-13; gi|198415484|ref|XP_002120528.1|PREDICTED: coiled-coil domain-containing protein 50 [Ciona intestinalis] 2e-13; gi|1005429274|ref|XP_015752372.1|PREDICTED: uncharacterized protein LOC107332162 [Acropora digitifera] 4e-13; gi|675386023|gb|KFM78920.1|Coiled-coil domain-containing protein 50, partial [Stegodyphus mimosarum] 4e-13; gi|1139805190|ref|XP_019923596.1|PREDICTED: trichohyalin isoform X4 [Crassostrea gigas] 6e-13;
NvERTx.4.153318 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153367 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153374 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154408 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161341 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171668 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171669 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171670 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171671 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173284 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173285 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174567 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176254 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177464 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177467 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180127 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180612 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180619 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181081 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188471 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192953 R-1 0.958822634925 E-3 0.54526488788 No_Uniprotmatch No_Description None
other nr_hits NA
More