#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

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Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.159445 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159446 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159448 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161387 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.163105 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162797 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.167984 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168377 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171952 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173163 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173826 R-1 0.640809439554 E-3 0.999999988531 Q8IUL8 Cartilage intermediate layer protein 2 gi|999973074|gb|KXJ12248.1|Protein SpAN [Exaiptasia pallida], 7e-07
other nr_hits NA
NvERTx.4.173828 R-1 0.640809439554 E-3 0.999999988531 Q8IUL8 Cartilage intermediate layer protein 2 gi|999973074|gb|KXJ12248.1|Protein SpAN [Exaiptasia pallida], 4e-07
other nr_hits NA
NvERTx.4.173832 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174075 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177615 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177616 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177748 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177749 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179279 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179280 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179282 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179335 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179945 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179948 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185174 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185176 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185576 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185564 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188621 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188622 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189611 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189613 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189614 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194868 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194869 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199715 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199707 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.205719 R-1 0.640809439554 E-3 0.999999988531 B8VIU6 Uncharacterized skeletal organic matrix protein 5 {ECO:0000303|PubMed:23765379} gi|156371290|ref|XP_001628697.1|predicted protein [Nematostella vectensis], 4e-49
other nr_hits gi|156356122|ref|XP_001623779.1|predicted protein [Nematostella vectensis] 4e-46; gi|999974176|gb|KXJ13350.1|putative skeletal organic matrix protein 5 [Exaiptasia pallida] 1e-43; gi|999976859|gb|KXJ16033.1|putative skeletal organic matrix protein 5 [Exaiptasia pallida] 7e-43; gi|999971876|gb|KXJ11050.1|putative skeletal organic matrix protein 5 [Exaiptasia pallida] 9e-43; gi|1005470184|ref|XP_015771974.1|PREDICTED: uncharacterized skeletal organic matrix protein 5-like isoform X1 [Acropora digitifera] 6e-42; gi|1005470186|ref|XP_015771975.1|PREDICTED: uncharacterized skeletal organic matrix protein 5-like isoform X2 [Acropora digitifera] 6e-42; gi|1005470188|ref|XP_015771977.1|PREDICTED: uncharacterized skeletal organic matrix protein 5-like isoform X3 [Acropora digitifera] 6e-42; gi|1005486364|ref|XP_015779783.1|PREDICTED: protein crumbs-like [Acropora digitifera] 2e-41; gi|156405948|ref|XP_001640993.1|predicted protein [Nematostella vectensis] 2e-41;
NvERTx.4.4331 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.224821 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.226066 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.228391 R-1 0.640809439554 E-3 0.999999988531 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121720 R-1 0.640749227977 E-4 0.52509063326 X1WWK2_ACYPI Uncharacterized protein {ECO:0000313|EnsemblMetazoa:ACYPI068902-PA} gi|156385121|ref|XP_001633480.1|predicted protein [Nematostella vectensis], 3e-50
other nr_hits gi|156357429|ref|XP_001624221.1|predicted protein [Nematostella vectensis] 1e-46; gi|156377954|ref|XP_001630910.1|predicted protein [Nematostella vectensis] 5e-45; gi|156348648|ref|XP_001621927.1|hypothetical protein NEMVEDRAFT_v1g221400 [Nematostella vectensis] 2e-32; gi|156357412|ref|XP_001624213.1|predicted protein [Nematostella vectensis] 2e-18; gi|999965904|gb|KXJ05082.1|hypothetical protein AC249_AIPGENE1937, partial [Exaiptasia pallida] 1e-15; gi|999974055|gb|KXJ13229.1|hypothetical protein AC249_AIPGENE7025 [Exaiptasia pallida] 2e-15; gi|999985179|gb|KXJ24320.1|hypothetical protein AC249_AIPGENE24537 [Exaiptasia pallida] 7e-15; gi|1005491962|ref|XP_015748654.1|PREDICTED: uncharacterized protein LOC107328435 [Acropora digitifera] 9e-13; gi|1005478481|ref|XP_015775952.1|PREDICTED: uncharacterized protein LOC107354063 [Acropora digitifera] 4e-08;
NvERTx.4.121721 R-1 0.640749227977 E-4 0.52509063326 X1WWK2_ACYPI Uncharacterized protein {ECO:0000313|EnsemblMetazoa:ACYPI068902-PA} gi|156385121|ref|XP_001633480.1|predicted protein [Nematostella vectensis], 3e-50
other nr_hits gi|156357429|ref|XP_001624221.1|predicted protein [Nematostella vectensis] 1e-46; gi|156377954|ref|XP_001630910.1|predicted protein [Nematostella vectensis] 5e-45; gi|156348648|ref|XP_001621927.1|hypothetical protein NEMVEDRAFT_v1g221400 [Nematostella vectensis] 2e-32; gi|156357412|ref|XP_001624213.1|predicted protein [Nematostella vectensis] 2e-18; gi|999965904|gb|KXJ05082.1|hypothetical protein AC249_AIPGENE1937, partial [Exaiptasia pallida] 1e-15; gi|999974055|gb|KXJ13229.1|hypothetical protein AC249_AIPGENE7025 [Exaiptasia pallida] 2e-15; gi|999985179|gb|KXJ24320.1|hypothetical protein AC249_AIPGENE24537 [Exaiptasia pallida] 7e-15; gi|1005491962|ref|XP_015748654.1|PREDICTED: uncharacterized protein LOC107328435 [Acropora digitifera] 9e-13; gi|1005478481|ref|XP_015775952.1|PREDICTED: uncharacterized protein LOC107354063 [Acropora digitifera] 4e-08;
NvERTx.4.121722 R-1 0.640749227977 E-4 0.52509063326 No_Uniprotmatch No_Description gi|156348648|ref|XP_001621927.1|hypothetical protein NEMVEDRAFT_v1g221400 [Nematostella vectensis], 2e-34
other nr_hits gi|156385121|ref|XP_001633480.1|predicted protein [Nematostella vectensis] 1e-33; gi|156357429|ref|XP_001624221.1|predicted protein [Nematostella vectensis] 1e-32; gi|156377954|ref|XP_001630910.1|predicted protein [Nematostella vectensis] 6e-31; gi|156357412|ref|XP_001624213.1|predicted protein [Nematostella vectensis] 1e-21; gi|999965904|gb|KXJ05082.1|hypothetical protein AC249_AIPGENE1937, partial [Exaiptasia pallida] 4e-09; gi|999974055|gb|KXJ13229.1|hypothetical protein AC249_AIPGENE7025 [Exaiptasia pallida] 5e-09; gi|999978719|gb|KXJ17893.1|hypothetical protein AC249_AIPGENE21837 [Exaiptasia pallida] 8e-09; gi|999985179|gb|KXJ24320.1|hypothetical protein AC249_AIPGENE24537 [Exaiptasia pallida] 1e-08; gi|1005491962|ref|XP_015748654.1|PREDICTED: uncharacterized protein LOC107328435 [Acropora digitifera] 3e-06;
NvERTx.4.121723 R-1 0.640749227977 E-4 0.52509063326 X1WWK2_ACYPI Uncharacterized protein {ECO:0000313|EnsemblMetazoa:ACYPI068902-PA} gi|156385121|ref|XP_001633480.1|predicted protein [Nematostella vectensis], 3e-50
other nr_hits gi|156357429|ref|XP_001624221.1|predicted protein [Nematostella vectensis] 1e-46; gi|156377954|ref|XP_001630910.1|predicted protein [Nematostella vectensis] 5e-45; gi|156348648|ref|XP_001621927.1|hypothetical protein NEMVEDRAFT_v1g221400 [Nematostella vectensis] 2e-32; gi|156357412|ref|XP_001624213.1|predicted protein [Nematostella vectensis] 2e-18; gi|999965904|gb|KXJ05082.1|hypothetical protein AC249_AIPGENE1937, partial [Exaiptasia pallida] 1e-15; gi|999974055|gb|KXJ13229.1|hypothetical protein AC249_AIPGENE7025 [Exaiptasia pallida] 2e-15; gi|999985179|gb|KXJ24320.1|hypothetical protein AC249_AIPGENE24537 [Exaiptasia pallida] 7e-15; gi|1005491962|ref|XP_015748654.1|PREDICTED: uncharacterized protein LOC107328435 [Acropora digitifera] 9e-13; gi|1005478481|ref|XP_015775952.1|PREDICTED: uncharacterized protein LOC107354063 [Acropora digitifera] 4e-08;
NvERTx.4.121725 R-1 0.640749227977 E-4 0.52509063326 X1WWK2_ACYPI Uncharacterized protein {ECO:0000313|EnsemblMetazoa:ACYPI068902-PA} gi|156385121|ref|XP_001633480.1|predicted protein [Nematostella vectensis], 3e-50
other nr_hits gi|156357429|ref|XP_001624221.1|predicted protein [Nematostella vectensis] 1e-46; gi|156377954|ref|XP_001630910.1|predicted protein [Nematostella vectensis] 5e-45; gi|156348648|ref|XP_001621927.1|hypothetical protein NEMVEDRAFT_v1g221400 [Nematostella vectensis] 2e-32; gi|156357412|ref|XP_001624213.1|predicted protein [Nematostella vectensis] 2e-18; gi|999965904|gb|KXJ05082.1|hypothetical protein AC249_AIPGENE1937, partial [Exaiptasia pallida] 1e-15; gi|999974055|gb|KXJ13229.1|hypothetical protein AC249_AIPGENE7025 [Exaiptasia pallida] 2e-15; gi|999985179|gb|KXJ24320.1|hypothetical protein AC249_AIPGENE24537 [Exaiptasia pallida] 7e-15; gi|1005491962|ref|XP_015748654.1|PREDICTED: uncharacterized protein LOC107328435 [Acropora digitifera] 9e-13; gi|1005478481|ref|XP_015775952.1|PREDICTED: uncharacterized protein LOC107354063 [Acropora digitifera] 4e-08;
NvERTx.4.121726 R-1 0.640749227977 E-4 0.52509063326 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121727 R-1 0.640749227977 E-4 0.52509063326 A0A023FVM9_9ACAR Putative retrotransposon gag protein {ECO:0000313|EMBL:JAC24765.1} gi|156357429|ref|XP_001624221.1|predicted protein [Nematostella vectensis], 8e-49
other nr_hits gi|156385121|ref|XP_001633480.1|predicted protein [Nematostella vectensis] 4e-48; gi|156377954|ref|XP_001630910.1|predicted protein [Nematostella vectensis] 3e-47; gi|156348648|ref|XP_001621927.1|hypothetical protein NEMVEDRAFT_v1g221400 [Nematostella vectensis] 1e-34; gi|156357412|ref|XP_001624213.1|predicted protein [Nematostella vectensis] 7e-21; gi|999965904|gb|KXJ05082.1|hypothetical protein AC249_AIPGENE1937, partial [Exaiptasia pallida] 1e-16; gi|999974055|gb|KXJ13229.1|hypothetical protein AC249_AIPGENE7025 [Exaiptasia pallida] 2e-16; gi|999985179|gb|KXJ24320.1|hypothetical protein AC249_AIPGENE24537 [Exaiptasia pallida] 7e-16; gi|1005491962|ref|XP_015748654.1|PREDICTED: uncharacterized protein LOC107328435 [Acropora digitifera] 7e-15; gi|1005478481|ref|XP_015775952.1|PREDICTED: uncharacterized protein LOC107354063 [Acropora digitifera] 3e-10;
NvERTx.4.121728 R-1 0.640749227977 E-4 0.52509063326 A0A023FVM9_9ACAR Putative retrotransposon gag protein {ECO:0000313|EMBL:JAC24765.1} gi|156357429|ref|XP_001624221.1|predicted protein [Nematostella vectensis], 8e-49
other nr_hits gi|156385121|ref|XP_001633480.1|predicted protein [Nematostella vectensis] 4e-48; gi|156377954|ref|XP_001630910.1|predicted protein [Nematostella vectensis] 3e-47; gi|156348648|ref|XP_001621927.1|hypothetical protein NEMVEDRAFT_v1g221400 [Nematostella vectensis] 1e-34; gi|156357412|ref|XP_001624213.1|predicted protein [Nematostella vectensis] 7e-21; gi|999965904|gb|KXJ05082.1|hypothetical protein AC249_AIPGENE1937, partial [Exaiptasia pallida] 1e-16; gi|999974055|gb|KXJ13229.1|hypothetical protein AC249_AIPGENE7025 [Exaiptasia pallida] 2e-16; gi|999985179|gb|KXJ24320.1|hypothetical protein AC249_AIPGENE24537 [Exaiptasia pallida] 7e-16; gi|1005491962|ref|XP_015748654.1|PREDICTED: uncharacterized protein LOC107328435 [Acropora digitifera] 7e-15; gi|1005478481|ref|XP_015775952.1|PREDICTED: uncharacterized protein LOC107354063 [Acropora digitifera] 3e-10;
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