#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.92786 R-1 0.657515164954 E-4 0.999999210763 Q8L7C8 Protein REDUCED WALL ACETYLATION 1 {ECO:0000303|PubMed:21212300, ECO:0000303|PubMed:21673009} gi|999969204|gb|KXJ08378.1|putative O-acetyltransferase CAS1 [Exaiptasia pallida], 4e-66
other nr_hits gi|1005462434|ref|XP_015768264.1|PREDICTED: protein REDUCED WALL ACETYLATION 1-like [Acropora digitifera] 2e-49; gi|156375566|ref|XP_001630151.1|predicted protein [Nematostella vectensis] 2e-21; gi|828205868|ref|XP_002169412.3|PREDICTED: probable O-acetyltransferase CAS1 [Hydra vulgaris] 1e-17; gi|1126206846|ref|XP_019637018.1|PREDICTED: protein REDUCED WALL ACETYLATION 2-like [Branchiostoma belcheri] 7e-17; gi|585690320|ref|XP_006821042.1|PREDICTED: CAS1 domain-containing protein 1-like [Saccoglossus kowalevskii] 2e-16; gi|919075335|ref|XP_013418784.1|PREDICTED: CAS1 domain-containing protein 1-like [Lingula anatina] 1e-15; gi|1126206850|ref|XP_019637020.1|PREDICTED: protein REDUCED WALL ACETYLATION 4-like [Branchiostoma belcheri] 3e-14; gi|260827533|ref|XP_002608719.1|hypothetical protein BRAFLDRAFT_120589 [Branchiostoma floridae] 7e-14; gi|779984815|ref|XP_011663529.1|PREDICTED: CAS1 domain-containing protein 1 isoform X2 [Strongylocentrotus purpuratus] 2e-11;
NvERTx.4.92788 R-1 0.657515164954 E-4 0.999999210763 Q8L7C8 Protein REDUCED WALL ACETYLATION 1 {ECO:0000303|PubMed:21212300, ECO:0000303|PubMed:21673009} gi|999969204|gb|KXJ08378.1|putative O-acetyltransferase CAS1 [Exaiptasia pallida], 4e-66
other nr_hits gi|1005462434|ref|XP_015768264.1|PREDICTED: protein REDUCED WALL ACETYLATION 1-like [Acropora digitifera] 2e-49; gi|156375566|ref|XP_001630151.1|predicted protein [Nematostella vectensis] 2e-21; gi|828205868|ref|XP_002169412.3|PREDICTED: probable O-acetyltransferase CAS1 [Hydra vulgaris] 1e-17; gi|1126206846|ref|XP_019637018.1|PREDICTED: protein REDUCED WALL ACETYLATION 2-like [Branchiostoma belcheri] 7e-17; gi|585690320|ref|XP_006821042.1|PREDICTED: CAS1 domain-containing protein 1-like [Saccoglossus kowalevskii] 2e-16; gi|919075335|ref|XP_013418784.1|PREDICTED: CAS1 domain-containing protein 1-like [Lingula anatina] 1e-15; gi|1126206850|ref|XP_019637020.1|PREDICTED: protein REDUCED WALL ACETYLATION 4-like [Branchiostoma belcheri] 3e-14; gi|260827533|ref|XP_002608719.1|hypothetical protein BRAFLDRAFT_120589 [Branchiostoma floridae] 7e-14; gi|779984815|ref|XP_011663529.1|PREDICTED: CAS1 domain-containing protein 1 isoform X2 [Strongylocentrotus purpuratus] 2e-11;
NvERTx.4.92772 R-1 0.657515164954 E-4 0.999999210763 Q8L7C8 Protein REDUCED WALL ACETYLATION 1 {ECO:0000303|PubMed:21212300, ECO:0000303|PubMed:21673009} gi|156375566|ref|XP_001630151.1|predicted protein [Nematostella vectensis], 2e-241
other nr_hits gi|828205868|ref|XP_002169412.3|PREDICTED: probable O-acetyltransferase CAS1 [Hydra vulgaris] 2e-146; gi|1126206846|ref|XP_019637018.1|PREDICTED: protein REDUCED WALL ACETYLATION 2-like [Branchiostoma belcheri] 2e-134; gi|1005462434|ref|XP_015768264.1|PREDICTED: protein REDUCED WALL ACETYLATION 1-like [Acropora digitifera] 1e-132; gi|260827533|ref|XP_002608719.1|hypothetical protein BRAFLDRAFT_120589 [Branchiostoma floridae] 1e-130; gi|1126206850|ref|XP_019637020.1|PREDICTED: protein REDUCED WALL ACETYLATION 4-like [Branchiostoma belcheri] 2e-130; gi|585690320|ref|XP_006821042.1|PREDICTED: CAS1 domain-containing protein 1-like [Saccoglossus kowalevskii] 8e-126; gi|919075335|ref|XP_013418784.1|PREDICTED: CAS1 domain-containing protein 1-like [Lingula anatina] 2e-124; gi|260827535|ref|XP_002608720.1|hypothetical protein BRAFLDRAFT_73941 [Branchiostoma floridae] 6e-124; gi|779984815|ref|XP_011663529.1|PREDICTED: CAS1 domain-containing protein 1 isoform X2 [Strongylocentrotus purpuratus] 1e-122;
NvERTx.4.92794 R-1 0.657515164954 E-4 0.999999210763 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92776 R-1 0.657515164954 E-4 0.999999210763 Q8L7C8 Protein REDUCED WALL ACETYLATION 1 {ECO:0000303|PubMed:21212300, ECO:0000303|PubMed:21673009} gi|1005462434|ref|XP_015768264.1|PREDICTED: protein REDUCED WALL ACETYLATION 1-like [Acropora digitifera], 7e-108
other nr_hits gi|999969204|gb|KXJ08378.1|putative O-acetyltransferase CAS1 [Exaiptasia pallida] 8e-86; gi|156375566|ref|XP_001630151.1|predicted protein [Nematostella vectensis] 9e-85; gi|828205868|ref|XP_002169412.3|PREDICTED: probable O-acetyltransferase CAS1 [Hydra vulgaris] 3e-67; gi|1126206846|ref|XP_019637018.1|PREDICTED: protein REDUCED WALL ACETYLATION 2-like [Branchiostoma belcheri] 3e-61; gi|919075335|ref|XP_013418784.1|PREDICTED: CAS1 domain-containing protein 1-like [Lingula anatina] 6e-60; gi|1126206850|ref|XP_019637020.1|PREDICTED: protein REDUCED WALL ACETYLATION 4-like [Branchiostoma belcheri] 8e-59; gi|260827533|ref|XP_002608719.1|hypothetical protein BRAFLDRAFT_120589 [Branchiostoma floridae] 2e-58; gi|585690320|ref|XP_006821042.1|PREDICTED: CAS1 domain-containing protein 1-like [Saccoglossus kowalevskii] 9e-58; gi|779984815|ref|XP_011663529.1|PREDICTED: CAS1 domain-containing protein 1 isoform X2 [Strongylocentrotus purpuratus] 3e-54;
NvERTx.4.92777 R-1 0.657515164954 E-4 0.999999210763 Q0WW17 Protein REDUCED WALL ACETYLATION 2 {ECO:0000303|PubMed:21212300, ECO:0000303|PubMed:21673009} gi|156375566|ref|XP_001630151.1|predicted protein [Nematostella vectensis], 3e-54
other nr_hits gi|1005462434|ref|XP_015768264.1|PREDICTED: protein REDUCED WALL ACETYLATION 1-like [Acropora digitifera] 2e-49; gi|828205868|ref|XP_002169412.3|PREDICTED: probable O-acetyltransferase CAS1 [Hydra vulgaris] 1e-40; gi|260827535|ref|XP_002608720.1|hypothetical protein BRAFLDRAFT_73941 [Branchiostoma floridae] 1e-35; gi|1126206850|ref|XP_019637020.1|PREDICTED: protein REDUCED WALL ACETYLATION 4-like [Branchiostoma belcheri] 2e-35; gi|260827533|ref|XP_002608719.1|hypothetical protein BRAFLDRAFT_120589 [Branchiostoma floridae] 2e-35; gi|1126206846|ref|XP_019637018.1|PREDICTED: protein REDUCED WALL ACETYLATION 2-like [Branchiostoma belcheri] 2e-35; gi|919075335|ref|XP_013418784.1|PREDICTED: CAS1 domain-containing protein 1-like [Lingula anatina] 3e-35; gi|676484005|ref|XP_009063206.1|hypothetical protein LOTGIDRAFT_63982, partial [Lottia gigantea] 4e-34; gi|443683754|gb|ELT87905.1|hypothetical protein CAPTEDRAFT_145222, partial [Capitella teleta] 6e-34;
NvERTx.4.27871 R-1 0.657479259584 E-7 0.999985698642 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.27872 R-1 0.657479259584 E-7 0.999985698642 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.27873 R-1 0.657479259584 E-7 0.999985698642 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140358 R-1 0.657479259584 E-7 0.999985698642 A0A1I7V4S0_9PELO Uncharacterized protein {ECO:0000313|WBParaSite:Csp11.Scaffold71.g453.t1} gi|156395135|ref|XP_001636967.1|predicted protein [Nematostella vectensis], 2e-63
other nr_hits gi|808861515|gb|KKF13335.1|putative keratin-associated protein 10-like ENSP00000375147 [Larimichthys crocea] 2e-11; gi|1122246013|ref|WP_073982503.1|hypothetical protein [Actinomyces sp. Marseille-P2825] 4e-08; gi|1158947722|ref|XP_020322383.1|serine/threonine-protein kinase NIM1-like [Oncorhynchus kisutch] 7e-08; gi|908447081|ref|XP_013081010.1|PREDICTED: uncharacterized protein LOC106066500 [Biomphalaria glabrata] 7e-08; gi|1046834741|ref|XP_017458833.1|PREDICTED: keratin-associated protein 5-3-like [Rattus norvegicus] 3e-07; gi|1043412177|gb|OCA24810.1|hypothetical protein XENTR_v90020256mg [Xenopus tropicalis] 3e-07; gi|1108922939|ref|XP_019116189.1|PREDICTED: lysyl oxidase homolog 3 isoform X3 [Larimichthys crocea] 3e-06; gi|676417152|gb|KFO60377.1|hypothetical protein N302_03680, partial [Corvus brachyrhynchos] 3e-06; gi|929288196|ref|XP_014021180.1|PREDICTED: fibronectin-like isoform X2 [Salmo salar] 6e-06;
NvERTx.4.156216 R-1 0.657479259584 E-7 0.999985698642 A0A0U1EHR7_STACP No_description gi|1045846674|ref|WP_065533037.1|hypothetical protein [Lactobacillus reuteri], 5e-08
other nr_hits gi|739767900|ref|WP_037620228.1|hypothetical protein, partial [Streptococcus sp. HSISS1] 1e-06; gi|880913770|ref|WP_048674167.1|hypothetical protein [Streptococcus sp. 449_SSPC] 4e-06; gi|1115232314|ref|WP_072098660.1|adhesin [Staphylococcus capitis] 8e-06; gi|488980509|ref|WP_002891349.1|flagellar biosynthesis protein FliS [Streptococcus salivarius] 1e-05; gi|1037038434|ref|XP_017080119.1|PREDICTED: flocculation protein FLO11 [Drosophila eugracilis] 2e-05; gi|968559759|ref|WP_058586752.1|adhesin [Staphylococcus capitis] 2e-05; gi|1121745569|ref|WP_073951130.1|flagellar biosynthesis protein FliS, partial [Streptococcus salivarius] 3e-05; gi|1105513351|embl|SGZ47043.1|CIC11C00000001218 [[Candida] 4e-05; gi|1055246465|ref|WP_066915539.1|hypothetical protein [Streptococcus sp. DD12] 4e-05;
NvERTx.4.11967 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.19661 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.53225 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.53226 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.53228 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.53229 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.55768 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.55770 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.58554 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.77242 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.77243 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.78666 R-1 0.657345609225 E-1 0.999999999999 Q9VX98 Density-regulated protein homolog {ECO:0000303|PubMed:25043021} gi|156384920|ref|XP_001633380.1|predicted protein [Nematostella vectensis], 3e-92
other nr_hits gi|999990348|gb|KXJ29372.1|Density-regulated protein [Exaiptasia pallida] 3e-68; gi|1005418954|ref|XP_015777692.1|PREDICTED: density-regulated protein homolog [Acropora digitifera] 3e-56; gi|1036789919|ref|XP_017135918.1|PREDICTED: density-regulated protein homolog [Drosophila miranda] 7e-48; gi|195393934|ref|XP_002055607.1|uncharacterized protein Dvir_GJ18691 [Drosophila virilis] 1e-47; gi|195129986|ref|XP_002009435.1|uncharacterized protein Dmoj_GI15232 [Drosophila mojavensis] 2e-47; gi|125980625|ref|XP_001354336.1|uncharacterized protein Dpse_GA21541 [Drosophila pseudoobscura pseudoobscura] 2e-47; gi|195043765|ref|XP_001991685.1|GH12791 [Drosophila grimshawi] 3e-47; gi|1060261866|ref|XP_017869661.1|PREDICTED: density-regulated protein homolog [Drosophila arizonae] 5e-47; gi|665808412|ref|XP_008552526.1|PREDICTED: density-regulated protein homolog [Microplitis demolitor] 5e-47;
NvERTx.4.78667 R-1 0.657345609225 E-1 0.999999999999 Q9VX98 Density-regulated protein homolog {ECO:0000303|PubMed:25043021} gi|156384920|ref|XP_001633380.1|predicted protein [Nematostella vectensis], 4e-73
other nr_hits gi|999990348|gb|KXJ29372.1|Density-regulated protein [Exaiptasia pallida] 4e-60; gi|1005418954|ref|XP_015777692.1|PREDICTED: density-regulated protein homolog [Acropora digitifera] 1e-48; gi|1036789919|ref|XP_017135918.1|PREDICTED: density-regulated protein homolog [Drosophila miranda] 9e-43; gi|125980625|ref|XP_001354336.1|uncharacterized protein Dpse_GA21541 [Drosophila pseudoobscura pseudoobscura] 3e-42; gi|195393934|ref|XP_002055607.1|uncharacterized protein Dvir_GJ18691 [Drosophila virilis] 6e-42; gi|1037034955|ref|XP_017056241.1|PREDICTED: density-regulated protein homolog [Drosophila ficusphila] 8e-42; gi|1036689363|ref|XP_017025050.1|PREDICTED: density-regulated protein homolog [Drosophila kikkawai] 8e-42; gi|195043765|ref|XP_001991685.1|GH12791 [Drosophila grimshawi] 8e-42; gi|195129986|ref|XP_002009435.1|uncharacterized protein Dmoj_GI15232 [Drosophila mojavensis] 1e-41;
NvERTx.4.97497 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97498 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97499 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97691 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101431 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.107544 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112629 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112913 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112921 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112923 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112925 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113922 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118854 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131996 R-1 0.657345609225 E-1 0.999999999999 NA NA None
other nr_hits NA
NvERTx.4.134143 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.134720 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.134736 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.134738 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137688 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137691 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140017 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143025 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147191 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.155917 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.155918 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.163120 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
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