#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.143463 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143464 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143466 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173257 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173258 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.175546 R-1 0.725046988892 E-6 0.999999988614 C3XT78_BRAFL Putative uncharacterized protein {ECO:0000313|EMBL:EEN68811.1} gi|1005475069|ref|XP_015774310.1|PREDICTED: Bloom syndrome protein homolog [Acropora digitifera], 7e-08
other nr_hits gi|260835612|ref|XP_002612802.1|hypothetical protein BRAFLDRAFT_128262 [Branchiostoma floridae] 4e-07; gi|999967797|gb|KXJ06971.1|ATP-dependent DNA helicase RecQ [Exaiptasia pallida] 3e-06; gi|999969123|gb|KXJ08297.1|Werner syndrome ATP-dependent helicase-like [Exaiptasia pallida] 3e-06; gi|1126184536|ref|XP_019624895.1|PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X2 [Branchiostoma belcheri] 4e-06; gi|1126184534|ref|XP_019624894.1|PREDICTED: ATP-dependent DNA helicase Q-like SIM isoform X1 [Branchiostoma belcheri] 4e-06; gi|999968296|gb|KXJ07470.1|ATP-dependent DNA helicase Q-like 4A, partial [Exaiptasia pallida] 2e-05; gi|260796163|ref|XP_002593074.1|hypothetical protein BRAFLDRAFT_72852 [Branchiostoma floridae] 2e-05;
NvERTx.4.185618 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185622 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185623 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201264 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201278 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201282 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204230 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204234 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204237 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204239 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204241 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204247 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204248 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204233 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204235 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204243 R-1 0.725046988892 E-6 0.999999988614 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.34805 R-1 0.72314386827 E-3 0.998209429947 Q13585 Melatonin-related receptor gi|156397179|ref|XP_001637769.1|predicted protein [Nematostella vectensis], 3e-10
other nr_hits NA
NvERTx.4.94858 R-1 0.72314386827 E-3 0.998209429947 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94862 R-1 0.72314386827 E-3 0.998209429947 Q1RMR0 DNA-directed RNA polymerase III subunit RPC7-like gi|156370809|ref|XP_001628460.1|predicted protein [Nematostella vectensis], 6e-58
other nr_hits gi|1005453564|ref|XP_015763942.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Acropora digitifera] 3e-30; gi|1005453566|ref|XP_015763943.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X2 [Acropora digitifera] 3e-30; gi|999971132|gb|KXJ10306.1|DNA-directed RNA polymerase III subunit RPC7-like [Exaiptasia pallida] 3e-26; gi|1121807093|ref|XP_019411563.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like [Crocodylus porosus] 1e-22; gi|170172536|ref|NP_081517.2|DNA-directed RNA polymerase III subunit RPC7-like isoform 1 [Mus musculus] 1e-22; gi|148706949|gb|EDL38896.1|polymerase (RNA) III (DNA directed) polypeptide G like, isoform CRA_b, partial [Mus musculus] 1e-22; gi|586461503|ref|XP_006861400.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like [Chrysochloris asiatica] 1e-22; gi|951017895|ref|XP_014460143.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like [Alligator mississippiensis] 1e-22; gi|20073329|gb|AAH27083.1|Polr3gl protein [Mus musculus] 1e-22;
NvERTx.4.94863 R-1 0.72314386827 E-3 0.998209429947 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94864 R-1 0.72314386827 E-3 0.998209429947 Q1RMR0 DNA-directed RNA polymerase III subunit RPC7-like gi|156370809|ref|XP_001628460.1|predicted protein [Nematostella vectensis], 5e-58
other nr_hits gi|1005453566|ref|XP_015763943.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X2 [Acropora digitifera] 8e-32; gi|1005453564|ref|XP_015763942.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Acropora digitifera] 3e-30; gi|999971132|gb|KXJ10306.1|DNA-directed RNA polymerase III subunit RPC7-like [Exaiptasia pallida] 2e-26; gi|1121807093|ref|XP_019411563.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like [Crocodylus porosus] 9e-23; gi|170172536|ref|NP_081517.2|DNA-directed RNA polymerase III subunit RPC7-like isoform 1 [Mus musculus] 1e-22; gi|148706949|gb|EDL38896.1|polymerase (RNA) III (DNA directed) polypeptide G like, isoform CRA_b, partial [Mus musculus] 1e-22; gi|586461503|ref|XP_006861400.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like [Chrysochloris asiatica] 1e-22; gi|951017895|ref|XP_014460143.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like [Alligator mississippiensis] 1e-22; gi|20073329|gb|AAH27083.1|Polr3gl protein [Mus musculus] 1e-22;
NvERTx.4.94865 R-1 0.72314386827 E-3 0.998209429947 Q8R0C0 DNA-directed RNA polymerase III subunit RPC7-like gi|156370809|ref|XP_001628460.1|predicted protein [Nematostella vectensis], 2e-36
other nr_hits gi|1005453566|ref|XP_015763943.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X2 [Acropora digitifera] 5e-16; gi|1005453564|ref|XP_015763942.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Acropora digitifera] 2e-14; gi|170172536|ref|NP_081517.2|DNA-directed RNA polymerase III subunit RPC7-like isoform 1 [Mus musculus] 8e-14; gi|148706948|gb|EDL38895.1|polymerase (RNA) III (DNA directed) polypeptide G like, isoform CRA_a, partial [Mus musculus] 8e-14; gi|148706949|gb|EDL38896.1|polymerase (RNA) III (DNA directed) polypeptide G like, isoform CRA_b, partial [Mus musculus] 8e-14; gi|656214651|ref|NP_001280630.1|DNA-directed RNA polymerase III subunit RPC7-like isoform 2 [Mus musculus] 8e-14; gi|20073329|gb|AAH27083.1|Polr3gl protein [Mus musculus] 8e-14; gi|586461503|ref|XP_006861400.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like [Chrysochloris asiatica] 2e-13; gi|672043514|ref|XP_008759553.1|PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Rattus norvegicus] 2e-13;
NvERTx.4.213550 R-1 0.72314386827 E-3 0.998209429947 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102499 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102500 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102501 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102502 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102503 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102504 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102505 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102506 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102507 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102508 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102510 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102512 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102514 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102513 R-1 0.722809051524 E-4 0.999936613121 V3Z090_LOTGI Uncharacterized protein {ECO:0000313|EMBL:ESO83858.1} gi|156350184|ref|XP_001622178.1|hypothetical protein NEMVEDRAFT_v1g142226 [Nematostella vectensis], 5e-15
other nr_hits gi|156322090|ref|XP_001618287.1|hypothetical protein NEMVEDRAFT_v1g155059 [Nematostella vectensis] 3e-11; gi|676490959|ref|XP_009065437.1|hypothetical protein LOTGIDRAFT_132613, partial [Lottia gigantea] 2e-07; gi|676461939|ref|XP_009056106.1|hypothetical protein LOTGIDRAFT_119386, partial [Lottia gigantea] 2e-07; gi|676447136|ref|XP_009051309.1|hypothetical protein LOTGIDRAFT_147106, partial [Lottia gigantea] 2e-07; gi|676483168|ref|XP_009062935.1|hypothetical protein LOTGIDRAFT_129288, partial [Lottia gigantea] 3e-07; gi|676462864|ref|XP_009056408.1|hypothetical protein LOTGIDRAFT_120098, partial [Lottia gigantea] 3e-07; gi|676482849|ref|XP_009062836.1|hypothetical protein LOTGIDRAFT_148144 [Lottia gigantea] 4e-07; gi|676453344|ref|XP_009053325.1|hypothetical protein LOTGIDRAFT_144292 [Lottia gigantea] 4e-07; gi|676451318|ref|XP_009052666.1|hypothetical protein LOTGIDRAFT_71630, partial [Lottia gigantea] 4e-07;
NvERTx.4.102515 R-1 0.722809051524 E-4 0.999936613121 V3ZMW3_LOTGI Uncharacterized protein {ECO:0000313|EMBL:ESO92718.1} gi|156350184|ref|XP_001622178.1|hypothetical protein NEMVEDRAFT_v1g142226 [Nematostella vectensis], 7e-20
other nr_hits gi|156322090|ref|XP_001618287.1|hypothetical protein NEMVEDRAFT_v1g155059 [Nematostella vectensis] 3e-11; gi|676462864|ref|XP_009056408.1|hypothetical protein LOTGIDRAFT_120098, partial [Lottia gigantea] 1e-07; gi|676490959|ref|XP_009065437.1|hypothetical protein LOTGIDRAFT_132613, partial [Lottia gigantea] 2e-07; gi|676461939|ref|XP_009056106.1|hypothetical protein LOTGIDRAFT_119386, partial [Lottia gigantea] 2e-07; gi|676447136|ref|XP_009051309.1|hypothetical protein LOTGIDRAFT_147106, partial [Lottia gigantea] 2e-07; gi|676483168|ref|XP_009062935.1|hypothetical protein LOTGIDRAFT_129288, partial [Lottia gigantea] 2e-07; gi|676482849|ref|XP_009062836.1|hypothetical protein LOTGIDRAFT_148144 [Lottia gigantea] 3e-07; gi|676453344|ref|XP_009053325.1|hypothetical protein LOTGIDRAFT_144292 [Lottia gigantea] 3e-07; gi|676451318|ref|XP_009052666.1|hypothetical protein LOTGIDRAFT_71630, partial [Lottia gigantea] 3e-07;
NvERTx.4.109675 R-1 0.722809051524 E-4 0.999936613121 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101267 R-1 0.721730277556 E-7 0.972233858995 Q5RHR6 Protein broad-minded gi|999972966|gb|KXJ12140.1|Protein broad-minded [Exaiptasia pallida], 7e-73
other nr_hits gi|156368130|ref|XP_001627549.1|predicted protein [Nematostella vectensis] 9e-59; gi|1005494025|ref|XP_015749646.1|PREDICTED: protein broad-minded-like, partial [Acropora digitifera] 3e-53; gi|1005492794|ref|XP_015749066.1|PREDICTED: protein broad-minded-like, partial [Acropora digitifera] 4e-33; gi|585672664|ref|XP_006818283.1|PREDICTED: protein broad-minded-like [Saccoglossus kowalevskii] 9e-28; gi|1087827350|ref|XP_018668106.1|PREDICTED: protein broad-minded-like [Ciona intestinalis] 1e-26; gi|919093398|ref|XP_013383524.1|PREDICTED: protein broad-minded-like [Lingula anatina] 2e-24; gi|1126193290|ref|XP_019629682.1|PREDICTED: protein broad-minded-like [Branchiostoma belcheri] 6e-24; gi|196011880|ref|XP_002115803.1|hypothetical protein TRIADDRAFT_59870 [Trichoplax adhaerens] 2e-23; gi|823458859|ref|XP_012428217.1|PREDICTED: protein broad-minded [Taeniopygia guttata] 3e-22;
NvERTx.4.224515 R-1 0.721730277556 E-7 0.972233858995 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.25443 R-1 0.721314209009 E-4 0.999999989545 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.95453 R-1 0.721314209009 E-4 0.999999989545 P04323 Retrovirus-related Pol polyprotein from transposon 17.6 gi|954587371|gb|KRZ65357.1|Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella papuae], 2e-300
other nr_hits gi|954474455|gb|KRZ04672.1|Retrovirus-related Pol polyprotein from transposon 17.6, partial [Trichinella zimbabwensis] 2e-290; gi|954394467|gb|KRY56749.1|Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella britovi] 3e-289; gi|954397838|gb|KRY59891.1|Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella britovi] 6e-281; gi|669320387|gb|KFD60727.1|hypothetical protein M514_27083 [Trichuris suis] 2e-280; gi|669304961|gb|KFD48519.1|hypothetical protein M513_10596 [Trichuris suis] 7e-271; gi|954267516|gb|KRX60095.1|Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella sp. T9] 2e-268; gi|1028724244|ref|XP_016664062.1|PREDICTED: uncharacterized protein LOC107885111 [Acyrthosiphon pisum] 7e-268; gi|449683878|ref|XP_004210482.1|PREDICTED: uncharacterized protein LOC101234622 [Hydra vulgaris] 1e-262; gi|732584655|gb|JAG07751.1|Retrovirus-related Pol polyprotein from transposon opus, partial [Lygus hesperus] 2e-262;
NvERTx.4.95454 R-1 0.721314209009 E-4 0.999999989545 P04323 Retrovirus-related Pol polyprotein from transposon 17.6 gi|954587371|gb|KRZ65357.1|Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella papuae], 2e-300
other nr_hits gi|954474455|gb|KRZ04672.1|Retrovirus-related Pol polyprotein from transposon 17.6, partial [Trichinella zimbabwensis] 2e-290; gi|954394467|gb|KRY56749.1|Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella britovi] 3e-289; gi|954397838|gb|KRY59891.1|Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella britovi] 6e-281; gi|669320387|gb|KFD60727.1|hypothetical protein M514_27083 [Trichuris suis] 2e-280; gi|669304961|gb|KFD48519.1|hypothetical protein M513_10596 [Trichuris suis] 7e-271; gi|954267516|gb|KRX60095.1|Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella sp. T9] 2e-268; gi|1028724244|ref|XP_016664062.1|PREDICTED: uncharacterized protein LOC107885111 [Acyrthosiphon pisum] 7e-268; gi|449683878|ref|XP_004210482.1|PREDICTED: uncharacterized protein LOC101234622 [Hydra vulgaris] 1e-262; gi|732584655|gb|JAG07751.1|Retrovirus-related Pol polyprotein from transposon opus, partial [Lygus hesperus] 2e-262;
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