#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster R-1

Cluster R-2

Cluster R-3

Cluster R-4

Cluster R-5

Cluster R-6

Cluster R-7

Cluster R-8

Cluster R-9

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.77977 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.77978 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90587 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90586 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90593 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96784 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.99930 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.115208 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121040 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123068 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.128875 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131955 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description gi|999980385|gb|KXJ19559.1|Werner syndrome ATP-dependent helicase [Exaiptasia pallida], 4e-10
other nr_hits gi|1005470585|ref|XP_015772178.1|PREDICTED: ATP-dependent DNA helicase RecQ-like [Acropora digitifera] 1e-09; gi|1005445572|ref|XP_015760079.1|PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Acropora digitifera] 2e-09; gi|1005478757|ref|XP_015776090.1|PREDICTED: ATP-dependent DNA helicase RecQ-like [Acropora digitifera] 1e-08; gi|999969673|gb|KXJ08847.1|Mediator of RNA polymerase II transcription subunit 34 [Exaiptasia pallida] 5e-08; gi|999967511|gb|KXJ06685.1|Werner syndrome ATP-dependent helicase [Exaiptasia pallida] 1e-07; gi|999980557|gb|KXJ19731.1|ATP-dependent DNA helicase Q5 [Exaiptasia pallida] 4e-05;
NvERTx.4.136947 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description gi|999968875|gb|KXJ08049.1|hypothetical protein AC249_AIPGENE18723 [Exaiptasia pallida], 3e-08
other nr_hits gi|999969109|gb|KXJ08283.1|hypothetical protein AC249_AIPGENE22226 [Exaiptasia pallida] 5e-07;
NvERTx.4.136949 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136951 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description gi|999968875|gb|KXJ08049.1|hypothetical protein AC249_AIPGENE18723 [Exaiptasia pallida], 3e-08
other nr_hits gi|999969109|gb|KXJ08283.1|hypothetical protein AC249_AIPGENE22226 [Exaiptasia pallida] 5e-07;
NvERTx.4.142767 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142769 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147901 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159532 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159540 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159542 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159541 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159543 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162182 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162185 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162187 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162191 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162184 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162200 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162202 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162207 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165384 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170067 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170076 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.172577 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.172578 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.172582 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.172729 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176188 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180378 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180380 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.183264 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.183259 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.3958 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196859 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196868 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196869 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196870 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196871 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196872 R-1 0.775708792935 E-4 0.999895080807 No_Uniprotmatch No_Description None
other nr_hits NA
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