#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.186918 R-5 0.434585716014 E-8 0.351677390235 T2ME56_HYDVU Mevalonate kinase {ECO:0000313|EMBL:CDG70376.1} gi|828225838|ref|XP_012563444.1|PREDICTED: uncharacterized protein LOC105848056 [Hydra vulgaris], 2e-41
other nr_hits gi|156350048|ref|XP_001622119.1|predicted protein [Nematostella vectensis] 2e-32; gi|999978838|gb|KXJ18012.1|hypothetical protein AC249_AIPGENE27483 [Exaiptasia pallida] 8e-27; gi|1005438090|ref|XP_015756456.1|PREDICTED: uncharacterized protein LOC107335916 [Acropora digitifera] 9e-24; gi|828204698|ref|XP_012556347.1|PREDICTED: uncharacterized protein LOC105844360, partial [Hydra vulgaris] 2e-19; gi|675883930|ref|XP_009027467.1|hypothetical protein HELRODRAFT_164225 [Helobdella robusta] 1e-16; gi|1007768933|ref|XP_015822834.1|PREDICTED: uncharacterized protein LOC107390551 [Nothobranchius furzeri] 6e-15; gi|828207581|ref|XP_012557332.1|PREDICTED: uncharacterized protein LOC105844830 [Hydra vulgaris] 6e-15; gi|675854290|ref|XP_009012705.1|hypothetical protein HELRODRAFT_168624 [Helobdella robusta] 7e-15; gi|928038856|ref|XP_013868123.1|PREDICTED: uncharacterized protein LOC106520513 [Austrofundulus limnaeus] 1e-14;
NvERTx.4.186920 R-5 0.434585716014 E-8 0.351677390235 T2ME56_HYDVU Mevalonate kinase {ECO:0000313|EMBL:CDG70376.1} gi|828225838|ref|XP_012563444.1|PREDICTED: uncharacterized protein LOC105848056 [Hydra vulgaris], 2e-38
other nr_hits gi|156350048|ref|XP_001622119.1|predicted protein [Nematostella vectensis] 4e-29; gi|999978838|gb|KXJ18012.1|hypothetical protein AC249_AIPGENE27483 [Exaiptasia pallida] 2e-22; gi|1005438090|ref|XP_015756456.1|PREDICTED: uncharacterized protein LOC107335916 [Acropora digitifera] 2e-19; gi|828204698|ref|XP_012556347.1|PREDICTED: uncharacterized protein LOC105844360, partial [Hydra vulgaris] 2e-16; gi|675883930|ref|XP_009027467.1|hypothetical protein HELRODRAFT_164225 [Helobdella robusta] 9e-15; gi|443701757|gb|ELU00056.1|hypothetical protein CAPTEDRAFT_195211 [Capitella teleta] 1e-13; gi|675854290|ref|XP_009012705.1|hypothetical protein HELRODRAFT_168624 [Helobdella robusta] 2e-13; gi|443688933|gb|ELT91461.1|hypothetical protein CAPTEDRAFT_196521, partial [Capitella teleta] 2e-13; gi|443699728|gb|ELT99048.1|hypothetical protein CAPTEDRAFT_209938, partial [Capitella teleta] 2e-13;
NvERTx.4.106273 NA NA E-8 0.335977685779 No_Uniprotmatch No_Description gi|156388925|ref|XP_001634743.1|predicted protein [Nematostella vectensis], 1e-08
other nr_hits NA
NvERTx.4.106288 NA NA E-8 0.335977685779 Q0V8T5 Contactin-associated protein like 5-2 gi|156382768|ref|XP_001632724.1|predicted protein [Nematostella vectensis], 5e-28
other nr_hits gi|156388923|ref|XP_001634742.1|predicted protein [Nematostella vectensis] 6e-28; gi|156407446|ref|XP_001641555.1|predicted protein [Nematostella vectensis] 8e-22; gi|156388925|ref|XP_001634743.1|predicted protein [Nematostella vectensis] 9e-19; gi|156366953|ref|XP_001627185.1|predicted protein [Nematostella vectensis] 2e-13; gi|156386711|ref|XP_001634055.1|predicted protein [Nematostella vectensis] 1e-12; gi|156386709|ref|XP_001634054.1|predicted protein [Nematostella vectensis] 1e-11; gi|156350248|ref|XP_001622206.1|predicted protein [Nematostella vectensis] 1e-11; gi|156349362|ref|XP_001622026.1|hypothetical protein NEMVEDRAFT_v1g142840 [Nematostella vectensis] 1e-11; gi|999979632|gb|KXJ18806.1|Contactin-associated protein-like 5 [Exaiptasia pallida] 9e-11;