#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.160752 R-1 0.391970160313 E-8 0.737307526344 Q5STE3 Follistatin-related protein 4 gi|156335383|ref|XP_001619567.1|hypothetical protein NEMVEDRAFT_v1g44446 [Nematostella vectensis], 2e-24
other nr_hits gi|156382194|ref|XP_001632439.1|predicted protein [Nematostella vectensis] 2e-23; gi|156382192|ref|XP_001632438.1|predicted protein [Nematostella vectensis] 3e-21; gi|156382196|ref|XP_001632440.1|predicted protein [Nematostella vectensis] 5e-19; gi|156382190|ref|XP_001632437.1|predicted protein [Nematostella vectensis] 9e-13; gi|156382176|ref|XP_001632430.1|predicted protein [Nematostella vectensis] 1e-10; gi|999973959|gb|KXJ13133.1|Agrin [Exaiptasia pallida] 2e-10; gi|156364719|ref|XP_001626493.1|predicted protein [Nematostella vectensis] 3e-10; gi|1005431877|ref|XP_015753595.1|PREDICTED: neurogenic locus Notch protein-like isoform X1 [Acropora digitifera] 6e-09; gi|1005431882|ref|XP_015753597.1|PREDICTED: neurogenic locus Notch protein-like isoform X3 [Acropora digitifera] 6e-09;
NvERTx.4.160758 R-1 0.391970160313 E-8 0.737307526344 A2ASQ1 Agrin gi|156382194|ref|XP_001632439.1|predicted protein [Nematostella vectensis], 5e-17
other nr_hits gi|999973959|gb|KXJ13133.1|Agrin [Exaiptasia pallida] 2e-13; gi|999978468|gb|KXJ17642.1|Agrin [Exaiptasia pallida] 6e-13; gi|999991148|gb|KXJ30164.1|Agrin [Exaiptasia pallida] 1e-09; gi|1009550993|ref|XP_015911094.1|PREDICTED: agrin-like [Parasteatoda tepidariorum] 5e-09; gi|999971910|gb|KXJ11084.1|Agrin [Exaiptasia pallida] 2e-08; gi|936594879|ref|XP_014210808.1|PREDICTED: agrin-like [Copidosoma floridanum] 3e-08; gi|1130211578|ref|XP_019754748.1|PREDICTED: agrin-like [Dendroctonus ponderosae] 5e-08; gi|1059413332|ref|XP_017779558.1|PREDICTED: agrin isoform X1 [Nicrophorus vespilloides] 1e-07; gi|1059413334|ref|XP_017779560.1|PREDICTED: agrin isoform X2 [Nicrophorus vespilloides] 1e-07;
NvERTx.4.32554 R-5 0.402237583893 E-8 0.735855058333 No_Uniprotmatch No_Description gi|156407392|ref|XP_001641528.1|predicted protein [Nematostella vectensis], 7e-17
other nr_hits NA
NvERTx.4.179739 R-5 0.402237583893 E-8 0.735855058333 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.224815 R-5 0.402237583893 E-8 0.735855058333 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137477 R-9 0.806472683901 E-8 0.73177871512 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137478 R-9 0.806472683901 E-8 0.73177871512 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137480 R-9 0.806472683901 E-8 0.73177871512 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137481 R-9 0.806472683901 E-8 0.73177871512 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137483 R-9 0.806472683901 E-8 0.73177871512 G4SLH0 Titin homolog {ECO:0000303|PubMed:12381307} gi|999981090|gb|KXJ20264.1|Flagellar attachment zone protein 1 [Exaiptasia pallida], 0e+00
other nr_hits gi|1005467947|ref|XP_015770883.1|PREDICTED: golgin subfamily B member 1-like [Acropora digitifera] 5e-201; gi|999981066|gb|KXJ20240.1|hypothetical protein AC249_AIPGENE16604 [Exaiptasia pallida] 6e-111; gi|156363753|ref|XP_001626205.1|predicted protein [Nematostella vectensis] 5e-84; gi|1005460437|ref|XP_015767300.1|PREDICTED: myosin-9-like [Acropora digitifera] 6e-75; gi|1005460413|ref|XP_015767287.1|PREDICTED: LOW QUALITY PROTEIN: centromere-associated protein E-like [Acropora digitifera] 3e-56; gi|123469906|ref|XP_001318162.1|viral A-type inclusion protein [Trichomonas vaginalis G3] 2e-48; gi|831285152|ref|XP_012673833.1|PREDICTED: trichohyalin-like, partial [Clupea harengus] 2e-45; gi|528510297|ref|XP_005159739.1|PREDICTED: nesprin-1 isoform X2 [Danio rerio] 3e-45; gi|688600508|ref|XP_009292627.1|PREDICTED: nesprin-1 isoform X3 [Danio rerio] 4e-44;
NvERTx.4.55387 R-4 0.855639940753 E-8 0.729795431882 Q90YI8 T-cell acute lymphocytic leukemia protein 1 gi|156398562|ref|XP_001638257.1|predicted protein [Nematostella vectensis], 2e-56
other nr_hits gi|999977537|gb|KXJ16711.1|T-cell acute lymphocytic leukemia protein 1-like [Exaiptasia pallida] 2e-18; gi|1035264535|ref|XP_008332182.2|PREDICTED: T-cell acute lymphocytic leukemia protein 1-like isoform X1 [Cynoglossus semilaevis] 8e-18; gi|1035264537|ref|XP_008332183.2|PREDICTED: T-cell acute lymphocytic leukemia protein 1-like isoform X2 [Cynoglossus semilaevis] 8e-18; gi|1079726577|ref|XP_018532249.1|PREDICTED: T-cell acute lymphocytic leukemia protein 1 [Lates calcarifer] 2e-17; gi|1143359688|ref|XP_019960613.1|PREDICTED: T-cell acute lymphocytic leukemia protein 1 isoform X1 [Paralichthys olivaceus] 5e-17; gi|1143359690|ref|XP_019960622.1|PREDICTED: T-cell acute lymphocytic leukemia protein 1 isoform X2 [Paralichthys olivaceus] 5e-17; gi|156398454|ref|XP_001638203.1|predicted protein [Nematostella vectensis] 5e-17; gi|928016684|ref|XP_013887390.1|PREDICTED: T-cell acute lymphocytic leukemia protein 1 [Austrofundulus limnaeus] 5e-17; gi|1108932442|ref|XP_019117666.1|PREDICTED: T-cell acute lymphocytic leukemia protein 1 isoform X1 [Larimichthys crocea] 7e-17;
NvERTx.4.3308 NA NA E-8 0.728714787341 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94961 R-3 0.927784361784 E-8 0.7276488537 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94962 R-3 0.927784361784 E-8 0.7276488537 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94965 R-3 0.927784361784 E-8 0.7276488537 No_Uniprotmatch No_Description gi|156398943|ref|XP_001638447.1|predicted protein [Nematostella vectensis], 6e-74
other nr_hits NA
NvERTx.4.94966 R-3 0.927784361784 E-8 0.7276488537 No_Uniprotmatch No_Description gi|156398943|ref|XP_001638447.1|predicted protein [Nematostella vectensis], 5e-75
other nr_hits NA
NvERTx.4.94967 R-3 0.927784361784 E-8 0.7276488537 No_Uniprotmatch No_Description gi|156398943|ref|XP_001638447.1|predicted protein [Nematostella vectensis], 4e-54
other nr_hits NA
NvERTx.4.94968 R-3 0.927784361784 E-8 0.7276488537 No_Uniprotmatch No_Description gi|156398943|ref|XP_001638447.1|predicted protein [Nematostella vectensis], 4e-79
other nr_hits NA
NvERTx.4.94969 R-3 0.927784361784 E-8 0.7276488537 No_Uniprotmatch No_Description gi|156398943|ref|XP_001638447.1|predicted protein [Nematostella vectensis], 5e-75
other nr_hits NA
NvERTx.4.94970 R-3 0.927784361784 E-8 0.7276488537 No_Uniprotmatch No_Description gi|156398943|ref|XP_001638447.1|predicted protein [Nematostella vectensis], 5e-50
other nr_hits NA
NvERTx.4.94971 R-3 0.927784361784 E-8 0.7276488537 No_Uniprotmatch No_Description gi|156398943|ref|XP_001638447.1|predicted protein [Nematostella vectensis], 2e-16
other nr_hits NA
NvERTx.4.94964 R-3 0.516707940543 E-8 0.726125974255 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92050 R-3 0.919627962284 E-8 0.723260907272 Q5UQN4 Uncharacterized protein L432 gi|156374076|ref|XP_001629635.1|predicted protein [Nematostella vectensis], 8e-86
other nr_hits gi|156340930|ref|XP_001620598.1|hypothetical protein NEMVEDRAFT_v1g222934 [Nematostella vectensis] 6e-67; gi|999986517|gb|KXJ25652.1|Uncharacterized protein L432 [Exaiptasia pallida] 1e-50; gi|1126195900|ref|XP_019631088.1|PREDICTED: uncharacterized protein LOC109475006 [Branchiostoma belcheri] 4e-39; gi|260836715|ref|XP_002613351.1|hypothetical protein BRAFLDRAFT_118738 [Branchiostoma floridae] 4e-39; gi|296434281|ref|NP_001171807.1|HD phosphohydrolase-like [Saccoglossus kowalevskii] 8e-38; gi|390334457|ref|XP_003723933.1|PREDICTED: uncharacterized protein LOC100894127 [Strongylocentrotus purpuratus] 3e-37; gi|1094942875|embl|SEJ04155.1|phosphonate degradation operons associated HDIG domain protein [Cyclobacterium halophilum] 4e-33; gi|919102296|ref|XP_013387539.1|PREDICTED: uncharacterized protein LOC106156700 [Lingula anatina] 4e-33; gi|1123499106|ref|WP_074223281.1|phosphohydrolase [Algoriphagus halophilus] 1e-32;
NvERTx.4.92051 R-3 0.919627962284 E-8 0.723260907272 W4YBN1_STRPU Uncharacterized protein {ECO:0000313|EnsemblMetazoa:SPU_013156-tr} gi|156374076|ref|XP_001629635.1|predicted protein [Nematostella vectensis], 1e-22
other nr_hits gi|999986517|gb|KXJ25652.1|Uncharacterized protein L432 [Exaiptasia pallida] 8e-08; gi|919102296|ref|XP_013387539.1|PREDICTED: uncharacterized protein LOC106156700 [Lingula anatina] 5e-05; gi|390334457|ref|XP_003723933.1|PREDICTED: uncharacterized protein LOC100894127 [Strongylocentrotus purpuratus] 5e-05;
NvERTx.4.92052 R-3 0.919627962284 E-8 0.723260907272 Q5UQN4 Uncharacterized protein L432 gi|156374076|ref|XP_001629635.1|predicted protein [Nematostella vectensis], 7e-108
other nr_hits gi|999986517|gb|KXJ25652.1|Uncharacterized protein L432 [Exaiptasia pallida] 5e-67; gi|156340930|ref|XP_001620598.1|hypothetical protein NEMVEDRAFT_v1g222934 [Nematostella vectensis] 8e-67; gi|260836715|ref|XP_002613351.1|hypothetical protein BRAFLDRAFT_118738 [Branchiostoma floridae] 1e-53; gi|1126195900|ref|XP_019631088.1|PREDICTED: uncharacterized protein LOC109475006 [Branchiostoma belcheri] 2e-53; gi|296434281|ref|NP_001171807.1|HD phosphohydrolase-like [Saccoglossus kowalevskii] 9e-53; gi|390334457|ref|XP_003723933.1|PREDICTED: uncharacterized protein LOC100894127 [Strongylocentrotus purpuratus] 7e-52; gi|1121256927|ref|WP_073573130.1|phosphohydrolase [Algoriphagus zhangzhouensis] 3e-48; gi|919102296|ref|XP_013387539.1|PREDICTED: uncharacterized protein LOC106156700 [Lingula anatina] 3e-48; gi|873991934|ref|WP_048644421.1|phosphohydrolase [Cyclobacterium amurskyense] 3e-46;
NvERTx.4.52800 R-2 0.984604667898 E-8 0.72292197557 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.82008 R-2 0.984604667898 E-8 0.72292197557 P55075 Fibroblast growth factor 8 gi|156390278|ref|XP_001635198.1|predicted protein [Nematostella vectensis], 3e-90
other nr_hits gi|400621238|gb|AFP87435.1|fibroblast growth factor 8-17-like protein, partial [Nematostella vectensis] 4e-78; gi|999983957|gb|KXJ23098.1|Fibroblast growth factor 17 [Exaiptasia pallida] 6e-50; gi|1005438951|ref|XP_015756884.1|PREDICTED: fibroblast growth factor 18-like isoform X1 [Acropora digitifera] 4e-48; gi|1005438953|ref|XP_015756885.1|PREDICTED: fibroblast growth factor 18-like isoform X2 [Acropora digitifera] 1e-45; gi|116235657|gb|ABJ88945.1|fibroblast growth factor 8a [Nematostella vectensis] 2e-26; gi|126015611|gb|ABN70836.1|fibroblast growth factor 8A [Nematostella vectensis] 2e-26; gi|1072267239|ref|XP_018419206.1|PREDICTED: fibroblast growth factor 18 [Nanorana parkeri] 2e-23; gi|632948478|ref|XP_007889620.1|PREDICTED: fibroblast growth factor 18 [Callorhinchus milii] 2e-23; gi|829726528|ref|XP_012624843.1|fibroblast growth factor 8 isoform X2 [Microcebus murinus] 3e-23;
NvERTx.4.82009 R-2 0.984604667898 E-8 0.72292197557 P63076 Fibroblast growth factor 17 gi|156390278|ref|XP_001635198.1|predicted protein [Nematostella vectensis], 3e-82
other nr_hits gi|400621238|gb|AFP87435.1|fibroblast growth factor 8-17-like protein, partial [Nematostella vectensis] 4e-78; gi|999983957|gb|KXJ23098.1|Fibroblast growth factor 17 [Exaiptasia pallida] 8e-56; gi|1005438951|ref|XP_015756884.1|PREDICTED: fibroblast growth factor 18-like isoform X1 [Acropora digitifera] 5e-48; gi|1005438953|ref|XP_015756885.1|PREDICTED: fibroblast growth factor 18-like isoform X2 [Acropora digitifera] 1e-45; gi|116235657|gb|ABJ88945.1|fibroblast growth factor 8a [Nematostella vectensis] 2e-26; gi|126015611|gb|ABN70836.1|fibroblast growth factor 8A [Nematostella vectensis] 2e-26; gi|1123978469|ref|XP_019600203.1|PREDICTED: fibroblast growth factor 17 isoform X2 [Rhinolophus sinicus] 6e-24; gi|1123978464|ref|XP_019600200.1|PREDICTED: uncharacterized protein LOC109454215 isoform X1 [Rhinolophus sinicus] 6e-24; gi|765132715|ref|XP_011478501.1|PREDICTED: fibroblast growth factor 18-like isoform X2 [Oryzias latipes] 8e-24;
NvERTx.4.82010 R-2 0.984604667898 E-8 0.72292197557 No_Uniprotmatch No_Description gi|400621238|gb|AFP87435.1|fibroblast growth factor 8-17-like protein, partial [Nematostella vectensis], 2e-37
other nr_hits gi|1005438953|ref|XP_015756885.1|PREDICTED: fibroblast growth factor 18-like isoform X2 [Acropora digitifera] 8e-07; gi|1005438951|ref|XP_015756884.1|PREDICTED: fibroblast growth factor 18-like isoform X1 [Acropora digitifera] 8e-07; gi|999983957|gb|KXJ23098.1|Fibroblast growth factor 17 [Exaiptasia pallida] 8e-07; gi|156390278|ref|XP_001635198.1|predicted protein [Nematostella vectensis] 1e-06;
NvERTx.4.82017 R-2 0.984604667898 E-8 0.72292197557 P55075 Fibroblast growth factor 8 gi|156390278|ref|XP_001635198.1|predicted protein [Nematostella vectensis], 2e-33
other nr_hits gi|999983957|gb|KXJ23098.1|Fibroblast growth factor 17 [Exaiptasia pallida] 3e-12; gi|1005438951|ref|XP_015756884.1|PREDICTED: fibroblast growth factor 18-like isoform X1 [Acropora digitifera] 2e-11; gi|1005438953|ref|XP_015756885.1|PREDICTED: fibroblast growth factor 18-like isoform X2 [Acropora digitifera] 5e-09; gi|116235657|gb|ABJ88945.1|fibroblast growth factor 8a [Nematostella vectensis] 5e-06; gi|126015611|gb|ABN70836.1|fibroblast growth factor 8A [Nematostella vectensis] 5e-06;
NvERTx.4.130183 R-9 0.988223210137 E-8 0.722488608535 A0A182HBN7_AEDAL Uncharacterized protein {ECO:0000313|VectorBase:AALF026044-PA} gi|156407294|ref|XP_001641479.1|predicted protein [Nematostella vectensis], 2e-17
other nr_hits gi|156407296|ref|XP_001641480.1|predicted protein [Nematostella vectensis] 1e-14; gi|156407290|ref|XP_001641477.1|predicted protein [Nematostella vectensis] 3e-14; gi|156407288|ref|XP_001641476.1|predicted protein [Nematostella vectensis] 2e-13; gi|156407284|ref|XP_001641474.1|predicted protein [Nematostella vectensis] 2e-13; gi|1121110238|ref|XP_019544795.1|PREDICTED: flocculation protein FLO11-like [Aedes albopictus] 3e-13; gi|1000193704|gb|KXJ69716.1|hypothetical protein RP20_CCG026044 [Aedes albopictus] 3e-13; gi|1121107937|ref|XP_019543739.1|PREDICTED: flocculation protein FLO11-like [Aedes albopictus] 1e-12; gi|985484749|gb|AMD08918.1|secretory calcium-binding phosphosphoprotein proline-glutamine-rich 11, partial [Lepisosteus oculatus] 7e-12; gi|403338443|gb|EJY68461.1|hypothetical protein OXYTRI_10925 [Oxytricha trifallax] 2e-11;
NvERTx.4.88953 R-6 0.985526198131 E-8 0.71958980475 Q14112 Nidogen-2 gi|156331975|ref|XP_001619222.1|hypothetical protein NEMVEDRAFT_v1g48353 [Nematostella vectensis], 6e-24
other nr_hits gi|156389679|ref|XP_001635118.1|predicted protein [Nematostella vectensis] 4e-22; gi|830013485|ref|XP_012613458.1|nidogen-2 isoform X1 [Microcebus murinus] 8e-18; gi|830013490|ref|XP_012613459.1|nidogen-2 isoform X2 [Microcebus murinus] 8e-18; gi|1123934784|ref|XP_019581254.1|PREDICTED: nidogen-2 isoform X2 [Rhinolophus sinicus] 2e-17; gi|1123934782|ref|XP_019581253.1|PREDICTED: nidogen-2 isoform X1 [Rhinolophus sinicus] 2e-17; gi|946673437|ref|XP_014420221.1|PREDICTED: nidogen-2 [Camelus ferus] 2e-17; gi|744573070|ref|XP_010981218.1|PREDICTED: nidogen-2 [Camelus dromedarius] 2e-17; gi|743741683|ref|XP_010965353.1|PREDICTED: nidogen-2 [Camelus bactrianus] 2e-17; gi|602679488|ref|XP_007446055.1|PREDICTED: LOW QUALITY PROTEIN: nidogen-2 [Lipotes vexillifer] 2e-17;
NvERTx.4.74064 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.74066 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.74067 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.74068 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168974 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168976 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168977 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description gi|156391815|ref|XP_001635745.1|predicted protein [Nematostella vectensis], 3e-22
other nr_hits NA
NvERTx.4.168978 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168983 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168984 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168985 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168986 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168987 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168988 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168989 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168990 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170005 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170006 R-6 0.535081307458 E-8 0.719090941477 No_Uniprotmatch No_Description None
other nr_hits NA
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