#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.64450 R-6 0.404626125429 E-8 0.831443722138 Q5PQZ3 Zinc transporter 9 gi|156382413|ref|XP_001632548.1|predicted protein [Nematostella vectensis], 1e-121
other nr_hits gi|196004787|ref|XP_002112260.1|hypothetical protein TRIADDRAFT_25311 [Trichoplax adhaerens] 2e-83; gi|828190248|ref|XP_012566700.1|PREDICTED: zinc transporter 9-like [Hydra vulgaris] 2e-77; gi|1005438625|ref|XP_015756716.1|PREDICTED: zinc transporter 9-like [Acropora digitifera] 2e-71; gi|1133469767|ref|XP_019854953.1|PREDICTED: zinc transporter 9-like [Amphimedon queenslandica] 3e-71; gi|1126185177|ref|XP_019625245.1|PREDICTED: zinc transporter 9-like [Branchiostoma belcheri] 1e-68; gi|823460190|ref|XP_012429013.1|PREDICTED: zinc transporter 9 [Taeniopygia guttata] 5e-65; gi|975107543|ref|XP_015269223.1|PREDICTED: zinc transporter 9 [Gekko japonicus] 2e-64; gi|705684310|ref|XP_010119853.1|PREDICTED: zinc transporter 9 [Chlamydotis macqueenii] 3e-64; gi|704590032|ref|XP_010191256.1|PREDICTED: zinc transporter 9 [Mesitornis unicolor] 3e-64;
NvERTx.4.64451 R-6 0.404626125429 E-8 0.831443722138 Q6PML9 Zinc transporter 9 gi|156382413|ref|XP_001632548.1|predicted protein [Nematostella vectensis], 1e-16
other nr_hits gi|1005438625|ref|XP_015756716.1|PREDICTED: zinc transporter 9-like [Acropora digitifera] 3e-11; gi|196004787|ref|XP_002112260.1|hypothetical protein TRIADDRAFT_25311 [Trichoplax adhaerens] 6e-09; gi|828190248|ref|XP_012566700.1|PREDICTED: zinc transporter 9-like [Hydra vulgaris] 5e-08; gi|1133491323|ref|XP_019862586.1|PREDICTED: zinc transporter 9-like, partial [Amphimedon queenslandica] 7e-08; gi|1133469767|ref|XP_019854953.1|PREDICTED: zinc transporter 9-like [Amphimedon queenslandica] 7e-08; gi|443693722|gb|ELT95016.1|hypothetical protein CAPTEDRAFT_183911 [Capitella teleta] 2e-07; gi|470407657|ref|XP_004336058.1|cation efflux family superfamily protein [Acanthamoeba castellanii str. Neff] 3e-07; gi|909136744|gb|KNE62549.1|cation diffusion facilitator family transporter [Allomyces macrogynus ATCC 38327] 1e-06; gi|909140820|gb|KNE65762.1|cation diffusion facilitator family transporter, partial [Allomyces macrogynus ATCC 38327] 1e-06;
NvERTx.4.64452 R-6 0.404626125429 E-8 0.831443722138 Q5PQZ3 Zinc transporter 9 gi|156382413|ref|XP_001632548.1|predicted protein [Nematostella vectensis], 1e-121
other nr_hits gi|196004787|ref|XP_002112260.1|hypothetical protein TRIADDRAFT_25311 [Trichoplax adhaerens] 2e-83; gi|828190248|ref|XP_012566700.1|PREDICTED: zinc transporter 9-like [Hydra vulgaris] 2e-77; gi|1005438625|ref|XP_015756716.1|PREDICTED: zinc transporter 9-like [Acropora digitifera] 2e-71; gi|1133469767|ref|XP_019854953.1|PREDICTED: zinc transporter 9-like [Amphimedon queenslandica] 3e-71; gi|1126185177|ref|XP_019625245.1|PREDICTED: zinc transporter 9-like [Branchiostoma belcheri] 1e-68; gi|823460190|ref|XP_012429013.1|PREDICTED: zinc transporter 9 [Taeniopygia guttata] 5e-65; gi|975107543|ref|XP_015269223.1|PREDICTED: zinc transporter 9 [Gekko japonicus] 2e-64; gi|705684310|ref|XP_010119853.1|PREDICTED: zinc transporter 9 [Chlamydotis macqueenii] 3e-64; gi|704590032|ref|XP_010191256.1|PREDICTED: zinc transporter 9 [Mesitornis unicolor] 3e-64;
NvERTx.4.64453 R-6 0.404626125429 E-8 0.831443722138 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.64454 R-6 0.404626125429 E-8 0.831443722138 Q5PQZ3 Zinc transporter 9 gi|156382413|ref|XP_001632548.1|predicted protein [Nematostella vectensis], 3e-151
other nr_hits gi|196004787|ref|XP_002112260.1|hypothetical protein TRIADDRAFT_25311 [Trichoplax adhaerens] 1e-103; gi|828190248|ref|XP_012566700.1|PREDICTED: zinc transporter 9-like [Hydra vulgaris] 5e-100; gi|1133469767|ref|XP_019854953.1|PREDICTED: zinc transporter 9-like [Amphimedon queenslandica] 1e-91; gi|1126185177|ref|XP_019625245.1|PREDICTED: zinc transporter 9-like [Branchiostoma belcheri] 3e-88; gi|823460190|ref|XP_012429013.1|PREDICTED: zinc transporter 9 [Taeniopygia guttata] 2e-84; gi|975107543|ref|XP_015269223.1|PREDICTED: zinc transporter 9 [Gekko japonicus] 5e-84; gi|1048407759|ref|XP_017525708.1|PREDICTED: zinc transporter 9, partial [Manis javanica] 7e-84; gi|705684310|ref|XP_010119853.1|PREDICTED: zinc transporter 9 [Chlamydotis macqueenii] 9e-84; gi|704590032|ref|XP_010191256.1|PREDICTED: zinc transporter 9 [Mesitornis unicolor] 9e-84;
NvERTx.4.64457 R-6 0.404626125429 E-8 0.831443722138 NA NA None
other nr_hits NA
NvERTx.4.23013 R-1 0.338550426091 E-8 0.830494525928 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.78542 R-1 0.338550426091 E-8 0.830494525928 No_Uniprotmatch No_Description gi|156379825|ref|XP_001631656.1|predicted protein [Nematostella vectensis], 7e-32
other nr_hits gi|156350082|ref|XP_001622134.1|hypothetical protein NEMVEDRAFT_v1g248556 [Nematostella vectensis] 2e-09; gi|156393557|ref|XP_001636394.1|predicted protein [Nematostella vectensis] 2e-06; gi|156354395|ref|XP_001623380.1|predicted protein [Nematostella vectensis] 8e-06; gi|1005425900|ref|XP_015749244.1|PREDICTED: trace amine-associated receptor 8b-like [Acropora digitifera] 2e-05;
NvERTx.4.78543 R-1 0.338550426091 E-8 0.830494525928 Q9WU25 Alpha-1A adrenergic receptor gi|156379825|ref|XP_001631656.1|predicted protein [Nematostella vectensis], 1e-200
other nr_hits gi|156350082|ref|XP_001622134.1|hypothetical protein NEMVEDRAFT_v1g248556 [Nematostella vectensis] 2e-62; gi|156408784|ref|XP_001642036.1|predicted protein [Nematostella vectensis] 5e-44; gi|1005443909|ref|XP_015759290.1|PREDICTED: melanocyte-stimulating hormone receptor-like [Acropora digitifera] 6e-41; gi|1005465918|ref|XP_015769942.1|PREDICTED: melanocyte-stimulating hormone receptor-like [Acropora digitifera] 5e-40; gi|1005440555|ref|XP_015757616.1|PREDICTED: adenosine receptor A3-like [Acropora digitifera] 1e-39; gi|156374315|ref|XP_001629753.1|predicted protein [Nematostella vectensis] 9e-39; gi|156402907|ref|XP_001639831.1|predicted protein [Nematostella vectensis] 5e-37; gi|1005425900|ref|XP_015749244.1|PREDICTED: trace amine-associated receptor 8b-like [Acropora digitifera] 1e-36; gi|1005452213|ref|XP_015763255.1|PREDICTED: histamine H2 receptor-like [Acropora digitifera] 2e-36;
NvERTx.4.7662 R-4 0.662063695097 E-8 0.830426345646 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154578 R-4 0.662063695097 E-8 0.830426345646 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.69924 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 7e-18
other nr_hits NA
NvERTx.4.69925 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 5e-16
other nr_hits NA
NvERTx.4.69934 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 2e-19
other nr_hits NA
NvERTx.4.69935 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 1e-09
other nr_hits NA
NvERTx.4.69936 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 3e-20
other nr_hits NA
NvERTx.4.69937 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 2e-27
other nr_hits NA
NvERTx.4.69938 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 2e-21
other nr_hits NA
NvERTx.4.69926 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 2e-25
other nr_hits NA
NvERTx.4.69927 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 2e-19
other nr_hits NA
NvERTx.4.69928 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 4e-11
other nr_hits NA
NvERTx.4.69929 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 1e-15
other nr_hits NA
NvERTx.4.69930 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 1e-23
other nr_hits NA
NvERTx.4.69931 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 4e-27
other nr_hits NA
NvERTx.4.69932 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 4e-23
other nr_hits NA
NvERTx.4.69933 R-6 0.974897625437 E-8 0.830251183855 No_Uniprotmatch No_Description gi|156380578|ref|XP_001631845.1|predicted protein [Nematostella vectensis], 7e-26
other nr_hits NA
NvERTx.4.69910 R-2 0.993472603655 E-8 0.829885661608 Q12466 Tricalbin-1 gi|999989180|gb|KXJ28222.1|Tricalbin-1 [Exaiptasia pallida], 0e+00
other nr_hits gi|156373036|ref|XP_001629340.1|predicted protein [Nematostella vectensis] 0e+00; gi|1005430107|ref|XP_015752801.1|PREDICTED: extended synaptotagmin-1-like [Acropora digitifera] 9e-230; gi|828224859|ref|XP_012563127.1|PREDICTED: uncharacterized protein PYUK71.03c-like isoform X1 [Hydra vulgaris] 6e-131; gi|828224861|ref|XP_002160309.3|PREDICTED: uncharacterized protein PYUK71.03c-like isoform X2 [Hydra vulgaris] 6e-131; gi|1005492824|ref|XP_015749082.1|PREDICTED: rabphilin-1-like, partial [Acropora digitifera] 9e-129; gi|585655581|ref|XP_006815506.1|PREDICTED: uncharacterized protein LOC102802144 [Saccoglossus kowalevskii] 2e-120; gi|919099094|ref|XP_013386081.1|PREDICTED: uncharacterized protein LOC106155687 isoform X3 [Lingula anatina] 3e-115; gi|961088680|ref|XP_014771195.1|PREDICTED: extended synaptotagmin-1-like isoform X2 [Octopus bimaculoides] 2e-114; gi|961088683|ref|XP_014771196.1|PREDICTED: extended synaptotagmin-1-like isoform X3 [Octopus bimaculoides] 1e-113;
NvERTx.4.69911 R-2 0.993472603655 E-8 0.829885661608 Q8L706 Synaptotagmin-5 gi|999989180|gb|KXJ28222.1|Tricalbin-1 [Exaiptasia pallida], 1e-135
other nr_hits gi|1005430107|ref|XP_015752801.1|PREDICTED: extended synaptotagmin-1-like [Acropora digitifera] 5e-95; gi|443684114|gb|ELT88133.1|hypothetical protein CAPTEDRAFT_221179 [Capitella teleta] 4e-21; gi|828224859|ref|XP_012563127.1|PREDICTED: uncharacterized protein PYUK71.03c-like isoform X1 [Hydra vulgaris] 5e-21; gi|828224861|ref|XP_002160309.3|PREDICTED: uncharacterized protein PYUK71.03c-like isoform X2 [Hydra vulgaris] 5e-21; gi|1126214370|ref|XP_019641096.1|PREDICTED: uncharacterized protein LOC109482718 [Branchiostoma belcheri] 1e-20; gi|919099088|ref|XP_013386079.1|PREDICTED: uncharacterized protein LOC106155687 isoform X1 [Lingula anatina] 1e-20; gi|919099092|ref|XP_013386080.1|PREDICTED: uncharacterized protein LOC106155687 isoform X2 [Lingula anatina] 1e-20; gi|919099094|ref|XP_013386081.1|PREDICTED: uncharacterized protein LOC106155687 isoform X3 [Lingula anatina] 1e-20; gi|260837041|ref|XP_002613514.1|hypothetical protein BRAFLDRAFT_71873 [Branchiostoma floridae] 1e-20;
NvERTx.4.69913 R-2 0.993472603655 E-8 0.829885661608 Q12466 Tricalbin-1 gi|999989180|gb|KXJ28222.1|Tricalbin-1 [Exaiptasia pallida], 0e+00
other nr_hits gi|156373036|ref|XP_001629340.1|predicted protein [Nematostella vectensis] 0e+00; gi|1005430107|ref|XP_015752801.1|PREDICTED: extended synaptotagmin-1-like [Acropora digitifera] 8e-228; gi|828224859|ref|XP_012563127.1|PREDICTED: uncharacterized protein PYUK71.03c-like isoform X1 [Hydra vulgaris] 3e-131; gi|828224861|ref|XP_002160309.3|PREDICTED: uncharacterized protein PYUK71.03c-like isoform X2 [Hydra vulgaris] 3e-131; gi|1005492824|ref|XP_015749082.1|PREDICTED: rabphilin-1-like, partial [Acropora digitifera] 8e-129; gi|585655581|ref|XP_006815506.1|PREDICTED: uncharacterized protein LOC102802144 [Saccoglossus kowalevskii] 1e-120; gi|919099094|ref|XP_013386081.1|PREDICTED: uncharacterized protein LOC106155687 isoform X3 [Lingula anatina] 3e-115; gi|961088680|ref|XP_014771195.1|PREDICTED: extended synaptotagmin-1-like isoform X2 [Octopus bimaculoides] 1e-114; gi|961088683|ref|XP_014771196.1|PREDICTED: extended synaptotagmin-1-like isoform X3 [Octopus bimaculoides] 8e-114;
NvERTx.4.69914 R-2 0.993472603655 E-8 0.829885661608 Q12466 Tricalbin-1 gi|999989180|gb|KXJ28222.1|Tricalbin-1 [Exaiptasia pallida], 0e+00
other nr_hits gi|156373036|ref|XP_001629340.1|predicted protein [Nematostella vectensis] 0e+00; gi|1005430107|ref|XP_015752801.1|PREDICTED: extended synaptotagmin-1-like [Acropora digitifera] 9e-230; gi|828224859|ref|XP_012563127.1|PREDICTED: uncharacterized protein PYUK71.03c-like isoform X1 [Hydra vulgaris] 6e-131; gi|828224861|ref|XP_002160309.3|PREDICTED: uncharacterized protein PYUK71.03c-like isoform X2 [Hydra vulgaris] 6e-131; gi|1005492824|ref|XP_015749082.1|PREDICTED: rabphilin-1-like, partial [Acropora digitifera] 9e-129; gi|585655581|ref|XP_006815506.1|PREDICTED: uncharacterized protein LOC102802144 [Saccoglossus kowalevskii] 2e-120; gi|919099094|ref|XP_013386081.1|PREDICTED: uncharacterized protein LOC106155687 isoform X3 [Lingula anatina] 3e-115; gi|961088680|ref|XP_014771195.1|PREDICTED: extended synaptotagmin-1-like isoform X2 [Octopus bimaculoides] 2e-114; gi|961088683|ref|XP_014771196.1|PREDICTED: extended synaptotagmin-1-like isoform X3 [Octopus bimaculoides] 1e-113;
NvERTx.4.178943 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.178944 R-4 0.955663411517 E-8 0.829722030902 NA NA None
other nr_hits NA
NvERTx.4.178946 R-4 0.955663411517 E-8 0.829722030902 NA NA None
other nr_hits NA
NvERTx.4.178947 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.178948 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192613 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192614 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192615 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192626 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192616 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192618 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192619 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192622 R-4 0.955663411517 E-8 0.829722030902 NA NA None
other nr_hits NA
NvERTx.4.192623 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192624 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192625 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192621 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201727 R-4 0.955663411517 E-8 0.829722030902 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.61531 R-4 0.984343735593 E-8 0.825950361556 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.61532 R-4 0.984343735593 E-8 0.825950361556 No_Uniprotmatch No_Description None
other nr_hits NA
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