#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.202343 R-6 0.98721831671 E-7 0.999862948117 Q9H583 HEAT repeat-containing protein 1 gi|156366129|ref|XP_001626993.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|585681179|ref|XP_002737451.2|PREDICTED: LOW QUALITY PROTEIN: HEAT repeat-containing protein 1 [Saccoglossus kowalevskii] 0e+00; gi|1126198437|ref|XP_019632440.1|PREDICTED: HEAT repeat-containing protein 1-like [Branchiostoma belcheri] 0e+00; gi|260818051|ref|XP_002603898.1|hypothetical protein BRAFLDRAFT_129998 [Branchiostoma floridae] 0e+00; gi|959037753|ref|XP_014730144.1|PREDICTED: HEAT repeat-containing protein 1 [Sturnus vulgaris] 0e+00; gi|929414805|ref|XP_014118938.1|PREDICTED: HEAT repeat-containing protein 1 [Pseudopodoces humilis] 0e+00; gi|998679962|ref|XP_015477439.1|PREDICTED: HEAT repeat-containing protein 1 [Parus major] 0e+00; gi|1062887752|ref|XP_017940825.1|PREDICTED: HEAT repeat-containing protein 1 [Manacus vitellinus] 0e+00; gi|1020970588|ref|XP_016152468.1|PREDICTED: HEAT repeat-containing protein 1 [Ficedula albicollis] 0e+00; gi|726999071|ref|XP_010389818.1|PREDICTED: HEAT repeat-containing protein 1 isoform X2 [Corvus cornix cornix] 0e+00;
NvERTx.4.206614 R-6 0.98721831671 E-7 0.999862948117 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.222298 R-6 0.98721831671 E-7 0.999862948117 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.45990 R-8 0.999823837575 E-7 0.999862740416 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.45991 R-8 0.999823837575 E-7 0.999862740416 Q61187 Tumor susceptibility gene 101 protein gi|156378621|ref|XP_001631240.1|predicted protein [Nematostella vectensis], 3e-101
other nr_hits gi|999971291|gb|KXJ10465.1|Tumor susceptibility gene 101 protein [Exaiptasia pallida] 1e-71; gi|1005438775|ref|XP_015756792.1|PREDICTED: tumor susceptibility gene 101 protein-like isoform X2 [Acropora digitifera] 2e-64; gi|1005438773|ref|XP_015756791.1|PREDICTED: tumor susceptibility gene 101 protein-like isoform X1 [Acropora digitifera] 6e-64; gi|1005496220|ref|XP_015750707.1|PREDICTED: tumor susceptibility gene 101 protein-like [Acropora digitifera] 8e-64; gi|1126177482|ref|XP_019621055.1|PREDICTED: tumor susceptibility gene 101 protein-like [Branchiostoma belcheri] 1e-56; gi|261289639|ref|XP_002604796.1|hypothetical protein BRAFLDRAFT_276977 [Branchiostoma floridae] 4e-56; gi|585678305|ref|XP_006819298.1|PREDICTED: tumor susceptibility gene 101 protein-like [Saccoglossus kowalevskii] 1e-53; gi|1020484534|ref|XP_016147829.1|PREDICTED: tumor susceptibility gene 101 protein-like isoform X2 [Sinocyclocheilus grahami] 6e-53; gi|1025223339|ref|XP_016430481.1|PREDICTED: tumor susceptibility gene 101 protein [Sinocyclocheilus rhinocerous] 1e-52;
NvERTx.4.45992 R-8 0.999823837575 E-7 0.999862740416 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.45993 R-8 0.999823837575 E-7 0.999862740416 Q61187 Tumor susceptibility gene 101 protein gi|156378621|ref|XP_001631240.1|predicted protein [Nematostella vectensis], 3e-101
other nr_hits gi|999971291|gb|KXJ10465.1|Tumor susceptibility gene 101 protein [Exaiptasia pallida] 1e-71; gi|1005438775|ref|XP_015756792.1|PREDICTED: tumor susceptibility gene 101 protein-like isoform X2 [Acropora digitifera] 2e-64; gi|1005438773|ref|XP_015756791.1|PREDICTED: tumor susceptibility gene 101 protein-like isoform X1 [Acropora digitifera] 6e-64; gi|1005496220|ref|XP_015750707.1|PREDICTED: tumor susceptibility gene 101 protein-like [Acropora digitifera] 8e-64; gi|1126177482|ref|XP_019621055.1|PREDICTED: tumor susceptibility gene 101 protein-like [Branchiostoma belcheri] 1e-56; gi|261289639|ref|XP_002604796.1|hypothetical protein BRAFLDRAFT_276977 [Branchiostoma floridae] 4e-56; gi|585678305|ref|XP_006819298.1|PREDICTED: tumor susceptibility gene 101 protein-like [Saccoglossus kowalevskii] 1e-53; gi|1020484534|ref|XP_016147829.1|PREDICTED: tumor susceptibility gene 101 protein-like isoform X2 [Sinocyclocheilus grahami] 6e-53; gi|1025223339|ref|XP_016430481.1|PREDICTED: tumor susceptibility gene 101 protein [Sinocyclocheilus rhinocerous] 1e-52;
NvERTx.4.155499 R-8 0.857730709518 E-7 0.999857169637 Q91VN6 Probable ATP-dependent RNA helicase DDX41 gi|156406955|ref|XP_001641310.1|predicted protein [Nematostella vectensis], 6e-271
other nr_hits gi|999989131|gb|KXJ28183.1|putative ATP-dependent RNA helicase DDX41 [Exaiptasia pallida] 2e-260; gi|1126187165|ref|XP_019626332.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Branchiostoma belcheri] 3e-231; gi|1005424758|ref|XP_015777607.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Acropora digitifera] 1e-230; gi|676468889|ref|XP_009058354.1|hypothetical protein LOTGIDRAFT_163615 [Lottia gigantea] 9e-229; gi|957819960|ref|XP_014677345.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Priapulus caudatus] 6e-228; gi|675377022|gb|KFM69924.1|ATP-dependent RNA helicase abstrakt, partial [Stegodyphus mimosarum] 4e-226; gi|961106311|ref|XP_014777272.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Octopus bimaculoides] 5e-225; gi|390351458|ref|XP_796437.3|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Strongylocentrotus purpuratus] 8e-225; gi|1079724459|ref|XP_018531125.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Lates calcarifer] 4e-224;
NvERTx.4.155500 R-8 0.857730709518 E-7 0.999857169637 Q91VN6 Probable ATP-dependent RNA helicase DDX41 gi|999989131|gb|KXJ28183.1|putative ATP-dependent RNA helicase DDX41 [Exaiptasia pallida], 2e-291
other nr_hits gi|156406955|ref|XP_001641310.1|predicted protein [Nematostella vectensis] 8e-271; gi|1126187165|ref|XP_019626332.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Branchiostoma belcheri] 9e-254; gi|676468889|ref|XP_009058354.1|hypothetical protein LOTGIDRAFT_163615 [Lottia gigantea] 1e-252; gi|1005424758|ref|XP_015777607.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Acropora digitifera] 2e-249; gi|675377022|gb|KFM69924.1|ATP-dependent RNA helicase abstrakt, partial [Stegodyphus mimosarum] 1e-247; gi|1079724459|ref|XP_018531125.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Lates calcarifer] 2e-245; gi|926641030|ref|XP_013786635.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Limulus polyphemus] 2e-245; gi|390351458|ref|XP_796437.3|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Strongylocentrotus purpuratus] 2e-245; gi|432879043|ref|XP_004073424.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Oryzias latipes] 6e-245;
NvERTx.4.155502 R-8 0.857730709518 E-7 0.999857169637 Q91VN6 Probable ATP-dependent RNA helicase DDX41 gi|999989131|gb|KXJ28183.1|putative ATP-dependent RNA helicase DDX41 [Exaiptasia pallida], 1e-54
other nr_hits gi|156406955|ref|XP_001641310.1|predicted protein [Nematostella vectensis] 2e-52; gi|676468889|ref|XP_009058354.1|hypothetical protein LOTGIDRAFT_163615 [Lottia gigantea] 3e-50; gi|1005424758|ref|XP_015777607.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Acropora digitifera] 3e-49; gi|852748288|ref|XP_012871523.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform X1 [Dipodomys ordii] 1e-48; gi|852748291|ref|XP_012871524.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform X2 [Dipodomys ordii] 1e-48; gi|686720471|ref|XP_009239607.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 [Pongo abelii] 2e-48; gi|1147273449|ref|XP_020018286.1|probable ATP-dependent RNA helicase DDX41 [Castor canadensis] 2e-48; gi|1104654290|ref|XP_019062743.1|PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform X2 [Fukomys damarensis] 2e-48; gi|1040122039|gb|OBS65470.1|hypothetical protein A6R68_05989 [Neotoma lepida] 2e-48;
NvERTx.4.233691 R-7 0.364374361759 E-7 0.999855603243 NA NA None
other nr_hits NA
NvERTx.4.20249 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.2126 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85096 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85097 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139227 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139230 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139233 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139234 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139235 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139229 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139232 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139237 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160633 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169903 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174943 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174950 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174951 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174952 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174954 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174955 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174956 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174957 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174958 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174959 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174961 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184350 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184351 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184355 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184360 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184384 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184374 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184376 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.191023 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.191033 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.191034 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.191035 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.191036 R-7 0.364374361759 E-7 0.999855603243 Q9W6F8 Wnt inhibitory factor 1 gi|156378005|ref|XP_001630935.1|predicted protein [Nematostella vectensis], 4e-127
other nr_hits gi|999981072|gb|KXJ20246.1|Protein shifted [Exaiptasia pallida] 4e-94; gi|1005460487|ref|XP_015767326.1|PREDICTED: uncharacterized protein LOC107346072 isoform X2 [Acropora digitifera] 6e-78; gi|1005460485|ref|XP_015767325.1|PREDICTED: uncharacterized protein LOC107346072 isoform X1 [Acropora digitifera] 8e-74; gi|828190758|ref|XP_004205574.2|PREDICTED: uncharacterized protein LOC101240594 [Hydra vulgaris] 1e-19; gi|831297970|ref|XP_012680829.1|PREDICTED: tyrosine-protein kinase RYK isoform X1 [Clupea harengus] 3e-10; gi|831297972|ref|XP_012680830.1|PREDICTED: tyrosine-protein kinase RYK isoform X2 [Clupea harengus] 3e-10; gi|973185742|ref|XP_015216755.1|PREDICTED: tyrosine-protein kinase RYK isoform X2 [Lepisosteus oculatus] 6e-09; gi|573900148|ref|XP_006637803.1|PREDICTED: tyrosine-protein kinase RYK isoform X1 [Lepisosteus oculatus] 6e-09; gi|1113761017|ref|XP_014460099.2|PREDICTED: tyrosine-protein kinase RYK isoform X1 [Alligator mississippiensis] 2e-08;
NvERTx.4.191037 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.191038 R-7 0.364374361759 E-7 0.999855603243 No_Uniprotmatch No_Description None
other nr_hits NA
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