#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.169727 R-7 0.998164159878 E-7 0.999998793356 No_Uniprotmatch No_Description gi|156352434|ref|XP_001622759.1|predicted protein [Nematostella vectensis], 2e-133
other nr_hits gi|156352438|ref|XP_001622761.1|predicted protein [Nematostella vectensis] 1e-123;
NvERTx.4.7061 NA NA E-7 0.999998770742 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.10101 NA NA E-7 0.999998770742 Q810U4 Neuronal cell adhesion molecule None
other nr_hits NA
NvERTx.4.199079 R-3 0.832795386346 E-7 0.999998751824 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199086 R-3 0.832795386346 E-7 0.999998751824 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199092 R-3 0.832795386346 E-7 0.999998751824 A0A146QKY9_FUNHE Uncharacterized protein {ECO:0000313|EMBL:JAQ56902.1} gi|999976425|gb|KXJ15599.1|putative RNA-directed DNA polymerase from transposon BS [Exaiptasia pallida], 1e-08
other nr_hits gi|999980095|gb|KXJ19269.1|Diphthine methyl ester synthase [Exaiptasia pallida] 1e-08; gi|999971461|gb|KXJ10635.1|putative RNA-directed DNA polymerase from transposon BS [Exaiptasia pallida] 1e-08; gi|999972980|gb|KXJ12154.1|Arachidonate 5-lipoxygenase [Exaiptasia pallida] 1e-08; gi|999989699|gb|KXJ28733.1|Histidine N-acetyltransferase [Exaiptasia pallida] 1e-08; gi|999968017|gb|KXJ07191.1|putative RNA-directed DNA polymerase from transposon BS [Exaiptasia pallida] 2e-08; gi|999980833|gb|KXJ20007.1|putative RNA-directed DNA polymerase from transposon BS [Exaiptasia pallida] 5e-08; gi|999976608|gb|KXJ15782.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 2e-07; gi|999983182|gb|KXJ22323.1|putative RNA-directed DNA polymerase from transposon BS [Exaiptasia pallida] 2e-07; gi|736289867|ref|XP_010790534.1|PREDICTED: vacuolar protein sorting-associated protein 13D-like [Notothenia coriiceps] 3e-07;
NvERTx.4.46565 R-9 0.315749256568 E-7 0.999998687048 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85272 R-9 0.315749256568 E-7 0.999998687048 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177714 R-9 0.315749256568 E-7 0.999998687048 Q09811 ATP-dependent DNA helicase hus2/rqh1 gi|156399357|ref|XP_001638468.1|predicted protein [Nematostella vectensis], 3e-136
other nr_hits gi|156401501|ref|XP_001639329.1|predicted protein [Nematostella vectensis] 1e-105; gi|999988445|gb|KXJ27531.1|ATP-dependent DNA helicase Q-like 1 [Exaiptasia pallida] 6e-51; gi|999968547|gb|KXJ07721.1|ATP-dependent DNA helicase RecQ [Exaiptasia pallida] 5e-37; gi|1007745752|ref|XP_015812890.1|PREDICTED: putative ATP-dependent DNA helicase Q1 [Nothobranchius furzeri] 1e-30; gi|1007798419|ref|XP_015797640.1|PREDICTED: ATP-dependent DNA helicase Q1-like [Nothobranchius furzeri] 1e-29; gi|260796163|ref|XP_002593074.1|hypothetical protein BRAFLDRAFT_72852 [Branchiostoma floridae] 1e-29; gi|260835612|ref|XP_002612802.1|hypothetical protein BRAFLDRAFT_128262 [Branchiostoma floridae] 2e-29; gi|1005449026|ref|XP_015761750.1|PREDICTED: ATP-dependent DNA helicase Q-like 3 [Acropora digitifera] 3e-29; gi|1126184534|ref|XP_019624894.1|PREDICTED: ATP-dependent DNA helicase Q-like SIM isoform X1 [Branchiostoma belcheri] 1e-28;
NvERTx.4.177715 R-9 0.315749256568 E-7 0.999998687048 Q09811 ATP-dependent DNA helicase hus2/rqh1 gi|156399357|ref|XP_001638468.1|predicted protein [Nematostella vectensis], 2e-162
other nr_hits gi|156401501|ref|XP_001639329.1|predicted protein [Nematostella vectensis] 1e-102; gi|999988445|gb|KXJ27531.1|ATP-dependent DNA helicase Q-like 1 [Exaiptasia pallida] 4e-61; gi|999968547|gb|KXJ07721.1|ATP-dependent DNA helicase RecQ [Exaiptasia pallida] 3e-48; gi|1005449026|ref|XP_015761750.1|PREDICTED: ATP-dependent DNA helicase Q-like 3 [Acropora digitifera] 2e-44; gi|1005423628|ref|XP_015772510.1|PREDICTED: ATP-dependent DNA helicase RecQ-like [Acropora digitifera] 1e-34; gi|1126184534|ref|XP_019624894.1|PREDICTED: ATP-dependent DNA helicase Q-like SIM isoform X1 [Branchiostoma belcheri] 1e-33; gi|260796163|ref|XP_002593074.1|hypothetical protein BRAFLDRAFT_72852 [Branchiostoma floridae] 1e-32; gi|260835612|ref|XP_002612802.1|hypothetical protein BRAFLDRAFT_128262 [Branchiostoma floridae] 7e-32; gi|1005428621|ref|XP_015752036.1|PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Acropora digitifera] 1e-31;
NvERTx.4.177716 R-9 0.315749256568 E-7 0.999998687048 Q09811 ATP-dependent DNA helicase hus2/rqh1 gi|156399357|ref|XP_001638468.1|predicted protein [Nematostella vectensis], 5e-169
other nr_hits gi|156401501|ref|XP_001639329.1|predicted protein [Nematostella vectensis] 1e-102; gi|999988445|gb|KXJ27531.1|ATP-dependent DNA helicase Q-like 1 [Exaiptasia pallida] 1e-62; gi|999968547|gb|KXJ07721.1|ATP-dependent DNA helicase RecQ [Exaiptasia pallida] 6e-51; gi|1005449026|ref|XP_015761750.1|PREDICTED: ATP-dependent DNA helicase Q-like 3 [Acropora digitifera] 1e-47; gi|1005423628|ref|XP_015772510.1|PREDICTED: ATP-dependent DNA helicase RecQ-like [Acropora digitifera] 2e-36; gi|1126184534|ref|XP_019624894.1|PREDICTED: ATP-dependent DNA helicase Q-like SIM isoform X1 [Branchiostoma belcheri] 1e-33; gi|1005428621|ref|XP_015752036.1|PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Acropora digitifera] 2e-33; gi|260796163|ref|XP_002593074.1|hypothetical protein BRAFLDRAFT_72852 [Branchiostoma floridae] 1e-32; gi|260835612|ref|XP_002612802.1|hypothetical protein BRAFLDRAFT_128262 [Branchiostoma floridae] 8e-32;
NvERTx.4.177717 R-9 0.315749256568 E-7 0.999998687048 P35187 ATP-dependent helicase SGS1 {ECO:0000303|PubMed:7969174} gi|156399357|ref|XP_001638468.1|predicted protein [Nematostella vectensis], 4e-49
other nr_hits gi|156401501|ref|XP_001639329.1|predicted protein [Nematostella vectensis] 2e-46; gi|999988445|gb|KXJ27531.1|ATP-dependent DNA helicase Q-like 1 [Exaiptasia pallida] 2e-16; gi|999968547|gb|KXJ07721.1|ATP-dependent DNA helicase RecQ [Exaiptasia pallida] 8e-14; gi|1133478093|ref|XP_019858144.1|PREDICTED: ATP-dependent DNA helicase Q-like SIM [Amphimedon queenslandica] 2e-09; gi|913429960|ref|WP_050412069.1|ATP-dependent DNA helicase RecQ [Massilia sp. NR 4-1] 5e-08; gi|909846049|gb|AKU25164.1|ATP-dependent DNA helicase RecQ [Massilia sp. NR 4-1] 5e-08; gi|514692739|ref|XP_004993942.1|hypothetical protein PTSG_12303 [Salpingoeca rosetta] 5e-08; gi|999988397|gb|KXJ27489.1|ATP-dependent DNA helicase Q-like 3 [Exaiptasia pallida] 9e-08; gi|950033658|ref|WP_057157665.1|hypothetical protein [Massilia sp. Root351] 9e-08;
NvERTx.4.230333 R-4 0.465900570305 E-7 0.999998681163 No_Uniprotmatch No_Description gi|156408235|ref|XP_001641762.1|predicted protein [Nematostella vectensis], 5e-16
other nr_hits gi|999966928|gb|KXJ06102.1|hypothetical protein AC249_AIPGENE15607 [Exaiptasia pallida] 8e-08;
NvERTx.4.19010 R-4 0.465900570305 E-7 0.999998681163 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87712 R-4 0.465900570305 E-7 0.999998681163 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87713 R-4 0.465900570305 E-7 0.999998681163 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87714 R-4 0.465900570305 E-7 0.999998681163 C3ZUF8_BRAFL Putative uncharacterized protein {ECO:0000313|EMBL:EEN43797.1} gi|156408235|ref|XP_001641762.1|predicted protein [Nematostella vectensis], 2e-109
other nr_hits gi|999966928|gb|KXJ06102.1|hypothetical protein AC249_AIPGENE15607 [Exaiptasia pallida] 2e-70; gi|1005490861|ref|XP_015748111.1|PREDICTED: uncharacterized protein LOC107327901 [Acropora digitifera] 1e-41; gi|260785474|ref|XP_002587786.1|hypothetical protein BRAFLDRAFT_126576 [Branchiostoma floridae] 2e-13; gi|1126224892|ref|XP_019646823.1|PREDICTED: uncharacterized protein LOC109487277 [Branchiostoma belcheri] 1e-11; gi|919010283|ref|XP_013389588.1|PREDICTED: uncharacterized protein LOC106158226 [Lingula anatina] 4e-06; gi|919063475|ref|XP_013413377.1|PREDICTED: uncharacterized protein LOC106175782 [Lingula anatina] 6e-06; gi|632962600|ref|XP_007897408.1|PREDICTED: uncharacterized protein LOC103182270 [Callorhinchus milii] 2e-05; gi|585648394|ref|XP_006814207.1|PREDICTED: uncharacterized protein LOC102807959 [Saccoglossus kowalevskii] 5e-05;
NvERTx.4.87715 R-4 0.465900570305 E-7 0.999998681163 A0A1S3HU92_LINUN uncharacterized protein LOC106158226 {ECO:0000313|RefSeq:XP_013389588.1} gi|156408235|ref|XP_001641762.1|predicted protein [Nematostella vectensis], 4e-147
other nr_hits gi|999966928|gb|KXJ06102.1|hypothetical protein AC249_AIPGENE15607 [Exaiptasia pallida] 2e-113; gi|1005490861|ref|XP_015748111.1|PREDICTED: uncharacterized protein LOC107327901 [Acropora digitifera] 3e-84; gi|1126224892|ref|XP_019646823.1|PREDICTED: uncharacterized protein LOC109487277 [Branchiostoma belcheri] 2e-22; gi|919010283|ref|XP_013389588.1|PREDICTED: uncharacterized protein LOC106158226 [Lingula anatina] 6e-18; gi|919063475|ref|XP_013413377.1|PREDICTED: uncharacterized protein LOC106175782 [Lingula anatina] 8e-18; gi|632962600|ref|XP_007897408.1|PREDICTED: uncharacterized protein LOC103182270 [Callorhinchus milii] 8e-17; gi|972965878|ref|XP_015200171.1|PREDICTED: uncharacterized protein LOC107077082 isoform X1 [Lepisosteus oculatus] 3e-14; gi|676469868|ref|XP_009058671.1|hypothetical protein LOTGIDRAFT_233686 [Lottia gigantea] 3e-14; gi|260785474|ref|XP_002587786.1|hypothetical protein BRAFLDRAFT_126576 [Branchiostoma floridae] 3e-13;
NvERTx.4.87717 R-4 0.465900570305 E-7 0.999998681163 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.60199 R-7 0.995170222236 E-7 0.999998674811 A6QQ21 COP9 signalosome complex subunit 6 gi|156367546|ref|XP_001627477.1|predicted protein [Nematostella vectensis], 4e-167
other nr_hits gi|999987056|gb|KXJ26179.1|COP9 signalosome complex subunit 6 [Exaiptasia pallida] 7e-150; gi|1005419690|ref|XP_015753754.1|PREDICTED: COP9 signalosome complex subunit 6-like [Acropora digitifera] 3e-136; gi|762130924|ref|XP_011448612.1|PREDICTED: COP9 signalosome complex subunit 6 [Crassostrea gigas] 2e-111; gi|957841739|ref|XP_014671202.1|PREDICTED: COP9 signalosome complex subunit 6-like isoform X1 [Priapulus caudatus] 2e-110; gi|390361934|ref|XP_797139.3|PREDICTED: COP9 signalosome complex subunit 6 isoform X1 [Strongylocentrotus purpuratus] 1e-109; gi|657529157|ref|XP_008293526.1|PREDICTED: COP9 signalosome complex subunit 6 isoform X2 [Stegastes partitus] 1e-108; gi|1126168628|ref|XP_019616234.1|PREDICTED: COP9 signalosome complex subunit 6-like [Branchiostoma belcheri] 1e-108; gi|742246117|ref|XP_010864662.1|PREDICTED: COP9 signalosome complex subunit 6 [Esox lucius] 2e-108; gi|734626388|ref|XP_010741333.1|PREDICTED: COP9 signalosome complex subunit 6 [Larimichthys crocea] 2e-108;
NvERTx.4.120738 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.120741 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131340 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 1e-49
other nr_hits gi|156341006|ref|XP_001620623.1|hypothetical protein NEMVEDRAFT_v1g147539 [Nematostella vectensis] 1e-06;
NvERTx.4.131341 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131342 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131343 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131344 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131345 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 8e-47
other nr_hits gi|156341006|ref|XP_001620623.1|hypothetical protein NEMVEDRAFT_v1g147539 [Nematostella vectensis] 1e-06;
NvERTx.4.131346 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170931 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170933 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194786 R-8 0.998445753436 E-7 0.9999986606 W4GFM3_9STRA Uncharacterized protein {ECO:0000313|EMBL:ETV78475.1} gi|999966893|gb|KXJ06067.1|hypothetical protein AC249_AIPGENE6047, partial [Exaiptasia pallida], 2e-38
other nr_hits gi|156376387|ref|XP_001630342.1|predicted protein [Nematostella vectensis] 2e-38; gi|999966075|gb|KXJ05251.1|hypothetical protein AC249_AIPGENE12109, partial [Exaiptasia pallida] 1e-31; gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis] 6e-26; gi|698798054|ref|XP_009832056.1|hypothetical protein H257_07998 [Aphanomyces astaci] 3e-07; gi|999968723|gb|KXJ07897.1|hypothetical protein AC249_AIPGENE25247 [Exaiptasia pallida] 8e-07; gi|674103622|gb|KFJ92835.1|recombinase [Pseudomonas sp. 1-7] 1e-06; gi|491040037|ref|WP_004901706.1|hypothetical protein [Acinetobacter brisouii] 2e-06; gi|490890236|ref|WP_004752189.1|hypothetical protein [Acinetobacter sp. ANC 3789] 2e-06; gi|746558220|ref|WP_039588508.1|recombinase [Pseudomonas frederiksbergensis] 3e-06;
NvERTx.4.194791 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 3e-37
other nr_hits NA
NvERTx.4.197283 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 2e-33
other nr_hits NA
NvERTx.4.197284 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 3e-42
other nr_hits NA
NvERTx.4.197287 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 5e-46
other nr_hits NA
NvERTx.4.197296 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197297 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197298 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197299 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197301 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197302 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 4e-30
other nr_hits NA
NvERTx.4.197303 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 1e-30
other nr_hits NA
NvERTx.4.197288 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 4e-30
other nr_hits NA
NvERTx.4.197289 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 1e-07
other nr_hits NA
NvERTx.4.197290 R-8 0.998445753436 E-7 0.9999986606 No_Uniprotmatch No_Description gi|156376389|ref|XP_001630343.1|predicted protein [Nematostella vectensis], 5e-46
other nr_hits NA
NvERTx.4.1809 R-3 0.608620207176 E-7 0.999998646423 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.22994 R-3 0.608620207176 E-7 0.999998646423 No_Uniprotmatch No_Description gi|156367038|ref|XP_001627227.1|predicted protein [Nematostella vectensis], 7e-62
other nr_hits gi|156367034|ref|XP_001627225.1|predicted protein [Nematostella vectensis] 1e-11; gi|156367036|ref|XP_001627226.1|predicted protein [Nematostella vectensis] 1e-09; gi|999987955|gb|KXJ27058.1|hypothetical protein AC249_AIPGENE13756, partial [Exaiptasia pallida] 2e-08; gi|999974434|gb|KXJ13608.1|hypothetical protein AC249_AIPGENE20102 [Exaiptasia pallida] 2e-08; gi|999975926|gb|KXJ15100.1|hypothetical protein AC249_AIPGENE11375 [Exaiptasia pallida] 2e-05;
NvERTx.4.22995 R-3 0.608620207176 E-7 0.999998646423 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.47471 R-3 0.608620207176 E-7 0.999998646423 No_Uniprotmatch No_Description None
other nr_hits NA
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