#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.218883 R-8 0.996184436171 E-7 0.999999986931 A1A5Q4 Cilia- and flagella-associated protein 206 {ECO:0000305} gi|999986220|gb|KXJ25361.1|UPF0704 protein C6orf165-like [Exaiptasia pallida], 3e-26
other nr_hits gi|1126187457|ref|XP_019626491.1|PREDICTED: cilia- and flagella-associated protein 206-like [Branchiostoma belcheri] 2e-22; gi|260817850|ref|XP_002603798.1|hypothetical protein BRAFLDRAFT_114989 [Branchiostoma floridae] 2e-22; gi|1087804399|ref|XP_018670839.1|PREDICTED: cilia- and flagella-associated protein 206-like [Ciona intestinalis] 8e-22; gi|919027852|ref|XP_013397751.1|PREDICTED: UPF0704 protein C6orf165 homolog [Lingula anatina] 2e-21; gi|762118540|ref|XP_011442159.1|PREDICTED: cilia- and flagella-associated protein 206 [Crassostrea gigas] 7e-21; gi|296531431|ref|NP_001171855.1|uncharacterized protein LOC100369566 [Saccoglossus kowalevskii] 2e-20; gi|72085806|ref|XP_780272.1|PREDICTED: UPF0704 protein C6orf165 homolog [Strongylocentrotus purpuratus] 6e-20; gi|676472776|ref|XP_009059600.1|hypothetical protein LOTGIDRAFT_218665 [Lottia gigantea] 6e-20; gi|1005469280|ref|XP_015771549.1|PREDICTED: UPF0704 protein C6orf165 homolog [Acropora digitifera] 2e-19;
NvERTx.4.68562 R-8 0.994745053562 E-7 0.99999998623 Q8VIG3 Radial spoke head 1 homolog gi|156389388|ref|XP_001634973.1|predicted protein [Nematostella vectensis], 2e-136
other nr_hits gi|999989318|gb|KXJ28360.1|Radial spoke head 1-like [Exaiptasia pallida] 9e-116; gi|1126220342|ref|XP_019644364.1|PREDICTED: radial spoke head 1 homolog [Branchiostoma belcheri] 9e-90; gi|586521529|ref|XP_006916786.1|PREDICTED: radial spoke head 1 homolog [Pteropus alecto] 2e-86; gi|759157062|ref|XP_011371169.1|PREDICTED: radial spoke head 1 homolog [Pteropus vampyrus] 2e-86; gi|676492523|ref|XP_009065945.1|hypothetical protein LOTGIDRAFT_133598 [Lottia gigantea] 2e-86; gi|431901454|gb|ELK08476.1|Radial spoke head 1 like protein [Pteropus alecto] 2e-86; gi|1016640510|ref|XP_016076845.1|PREDICTED: radial spoke head 1 homolog [Miniopterus natalensis] 2e-86; gi|1012117874|ref|XP_015998950.1|PREDICTED: radial spoke head 1 homolog isoform X2 [Rousettus aegyptiacus] 1e-85; gi|58865924|ref|NP_001012176.1|radial spoke head 1 homolog [Rattus norvegicus] 2e-85;
NvERTx.4.225365 R-8 0.994745053562 E-7 0.99999998623 Q6VTH5 Radial spoke head 1 homolog gi|1025000543|ref|XP_016319196.1|PREDICTED: radial spoke head 1 homolog isoform X2 [Sinocyclocheilus anshuiensis], 7e-31
other nr_hits gi|260828071|ref|XP_002608987.1|hypothetical protein BRAFLDRAFT_130958 [Branchiostoma floridae] 1e-30; gi|1049253565|ref|XP_017566272.1|PREDICTED: radial spoke head 1 homolog [Pygocentrus nattereri] 1e-30; gi|823405275|ref|XP_012413440.1|PREDICTED: radial spoke head 1 homolog isoform X2 [Trichechus manatus latirostris] 2e-30; gi|634866156|ref|XP_007945464.1|PREDICTED: radial spoke head 1 homolog isoform X2 [Orycteropus afer afer] 2e-30; gi|780158049|ref|XP_011682654.1|PREDICTED: radial spoke head 1 homolog [Strongylocentrotus purpuratus] 4e-30; gi|731243033|ref|XP_010634798.1|PREDICTED: radial spoke head 1 homolog isoform X3 [Fukomys damarensis] 6e-30; gi|795276463|ref|XP_011857951.1|PREDICTED: radial spoke head 1 homolog isoform X2 [Mandrillus leucophaeus] 8e-30; gi|908499111|ref|XP_013061575.1|PREDICTED: radial spoke head 1 homolog [Biomphalaria glabrata] 3e-29; gi|47215789|embl|CAG02585.1|unnamed protein product, partial [Tetraodon nigroviridis] 5e-29;
NvERTx.4.189267 R-3 0.999576174499 E-7 0.999999984912 O54905 Beta-1,3-galactosyltransferase 2 gi|156361957|ref|XP_001625549.1|predicted protein [Nematostella vectensis], 2e-110
other nr_hits gi|156359308|ref|XP_001624712.1|predicted protein [Nematostella vectensis] 2e-40; gi|156380895|ref|XP_001632002.1|predicted protein [Nematostella vectensis] 1e-37; gi|999975899|gb|KXJ15073.1|Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase [Exaiptasia pallida] 9e-37; gi|999969934|gb|KXJ09108.1|putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842 [Exaiptasia pallida] 3e-36; gi|156383842|ref|XP_001633041.1|predicted protein [Nematostella vectensis] 7e-34; gi|1005433377|ref|XP_015754236.1|PREDICTED: UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1-like [Acropora digitifera] 1e-32; gi|156376579|ref|XP_001630437.1|predicted protein [Nematostella vectensis] 2e-30; gi|585719546|ref|XP_006826082.1|PREDICTED: beta-1,3-galactosyltransferase 1-like [Saccoglossus kowalevskii] 1e-29; gi|156396729|ref|XP_001637545.1|predicted protein [Nematostella vectensis] 3e-29;
NvERTx.4.224849 R-3 0.999576174499 E-7 0.999999984912 O54905 Beta-1,3-galactosyltransferase 2 gi|156361957|ref|XP_001625549.1|predicted protein [Nematostella vectensis], 9e-29
other nr_hits gi|156359308|ref|XP_001624712.1|predicted protein [Nematostella vectensis] 1e-05;
NvERTx.4.38975 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.49827 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94759 R-2 0.99392117942 E-7 0.999999984783 Q6J8I9 Lens fiber major intrinsic protein gi|156384136|ref|XP_001633187.1|predicted protein [Nematostella vectensis], 3e-94
other nr_hits gi|1005479325|ref|XP_015776391.1|PREDICTED: aquaporin-4-like [Acropora digitifera] 2e-66; gi|1005479315|ref|XP_015776386.1|PREDICTED: aquaporin-5-like [Acropora digitifera] 7e-58; gi|590713403|gb|AHL29028.1|aquaporin, partial [Stagnicola palustris] 4e-50; gi|564113767|gb|AHB64460.1|aquaporin [Portunus trituberculatus] 7e-50; gi|590713144|gb|AHL29026.1|aquaporin, partial [Lymnaea stagnalis] 9e-50; gi|590713289|gb|AHL29027.1|aquaporin, partial [Catascopia terebra] 3e-49; gi|676495895|ref|XP_009067035.1|hypothetical protein LOTGIDRAFT_170145 [Lottia gigantea] 5e-48; gi|336169734|gb|AEI25531.1|aquaporin 1 [Penaeus monodon] 2e-47; gi|999976835|gb|KXJ16009.1|Aquaporin AQPAe.a [Exaiptasia pallida] 7e-47;
NvERTx.4.94761 R-2 0.99392117942 E-7 0.999999984783 P55567 Uncharacterized protein y4mH gi|156386226|ref|XP_001633814.1|predicted protein [Nematostella vectensis], 5e-149
other nr_hits gi|999987560|gb|KXJ26673.1|Uncharacterized protein y4mH [Exaiptasia pallida] 1e-79; gi|1126218916|ref|XP_019643580.1|PREDICTED: uncharacterized protein LOC109484674 [Branchiostoma belcheri] 9e-77; gi|260828817|ref|XP_002609359.1|hypothetical protein BRAFLDRAFT_99018 [Branchiostoma floridae] 8e-72; gi|20302775|gb|AF391295_5|AAM18896.1|unknown [Branchiostoma floridae] 8e-72; gi|1005457661|ref|XP_015765954.1|PREDICTED: uncharacterized protein y4mH-like isoform X3 [Acropora digitifera] 1e-66; gi|1005457657|ref|XP_015765952.1|PREDICTED: uncharacterized protein y4mH-like isoform X1 [Acropora digitifera] 3e-65; gi|1005457659|ref|XP_015765953.1|PREDICTED: uncharacterized protein y4mH-like isoform X2 [Acropora digitifera] 3e-65; gi|762119119|ref|XP_011442459.1|PREDICTED: uncharacterized protein LOC105338874 [Crassostrea gigas] 8e-65; gi|919071794|ref|XP_013417215.1|PREDICTED: uncharacterized protein y4mH-like isoform X1 [Lingula anatina] 2e-64;
NvERTx.4.94762 R-2 0.99392117942 E-7 0.999999984783 P55088 Aquaporin-4 gi|156384136|ref|XP_001633187.1|predicted protein [Nematostella vectensis], 1e-130
other nr_hits gi|1005479325|ref|XP_015776391.1|PREDICTED: aquaporin-4-like [Acropora digitifera] 2e-78; gi|1005479315|ref|XP_015776386.1|PREDICTED: aquaporin-5-like [Acropora digitifera] 2e-59; gi|590713144|gb|AHL29026.1|aquaporin, partial [Lymnaea stagnalis] 3e-53; gi|585665553|ref|XP_006816957.1|PREDICTED: aquaporin-4-like [Saccoglossus kowalevskii] 4e-53; gi|590713289|gb|AHL29027.1|aquaporin, partial [Catascopia terebra] 1e-52; gi|590713403|gb|AHL29028.1|aquaporin, partial [Stagnicola palustris] 1e-52; gi|676495895|ref|XP_009067035.1|hypothetical protein LOTGIDRAFT_170145 [Lottia gigantea] 2e-52; gi|1049215175|ref|XP_017543233.1|PREDICTED: aquaporin-4-like isoform X1 [Pygocentrus nattereri] 7e-52; gi|1049215177|ref|XP_017543242.1|PREDICTED: aquaporin-4-like isoform X2 [Pygocentrus nattereri] 7e-52;
NvERTx.4.94751 R-2 0.99392117942 E-7 0.999999984783 P55567 Uncharacterized protein y4mH gi|156386226|ref|XP_001633814.1|predicted protein [Nematostella vectensis], 3e-40
other nr_hits gi|999987560|gb|KXJ26673.1|Uncharacterized protein y4mH [Exaiptasia pallida] 5e-17; gi|503395559|ref|WP_013630220.1|amidohydrolase [Rubinisphaera brasiliensis] 1e-16; gi|1126218916|ref|XP_019643580.1|PREDICTED: uncharacterized protein LOC109484674 [Branchiostoma belcheri] 5e-16; gi|919071794|ref|XP_013417215.1|PREDICTED: uncharacterized protein y4mH-like isoform X1 [Lingula anatina] 2e-15; gi|919071797|ref|XP_013417216.1|PREDICTED: uncharacterized protein y4mH-like isoform X2 [Lingula anatina] 2e-15; gi|780189516|ref|XP_011663191.1|PREDICTED: uncharacterized protein LOC587804 [Strongylocentrotus purpuratus] 4e-15; gi|919019838|ref|XP_013393929.1|PREDICTED: uncharacterized protein y4mH-like isoform X1 [Lingula anatina] 4e-15; gi|919019840|ref|XP_013393930.1|PREDICTED: uncharacterized protein y4mH-like isoform X2 [Lingula anatina] 4e-15; gi|499900214|ref|WP_011580948.1|amidohydrolase [Chelativorans sp. BNC1] 6e-15;
NvERTx.4.94753 R-2 0.99392117942 E-7 0.999999984783 P55088 Aquaporin-4 gi|156384136|ref|XP_001633187.1|predicted protein [Nematostella vectensis], 1e-130
other nr_hits gi|1005479325|ref|XP_015776391.1|PREDICTED: aquaporin-4-like [Acropora digitifera] 2e-78; gi|1005479315|ref|XP_015776386.1|PREDICTED: aquaporin-5-like [Acropora digitifera] 2e-59; gi|590713144|gb|AHL29026.1|aquaporin, partial [Lymnaea stagnalis] 3e-53; gi|585665553|ref|XP_006816957.1|PREDICTED: aquaporin-4-like [Saccoglossus kowalevskii] 4e-53; gi|590713289|gb|AHL29027.1|aquaporin, partial [Catascopia terebra] 1e-52; gi|590713403|gb|AHL29028.1|aquaporin, partial [Stagnicola palustris] 1e-52; gi|676495895|ref|XP_009067035.1|hypothetical protein LOTGIDRAFT_170145 [Lottia gigantea] 2e-52; gi|1049215175|ref|XP_017543233.1|PREDICTED: aquaporin-4-like isoform X1 [Pygocentrus nattereri] 7e-52; gi|1049215177|ref|XP_017543242.1|PREDICTED: aquaporin-4-like isoform X2 [Pygocentrus nattereri] 7e-52;
NvERTx.4.94755 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94757 R-2 0.99392117942 E-7 0.999999984783 Q6J8I9 Lens fiber major intrinsic protein gi|156384136|ref|XP_001633187.1|predicted protein [Nematostella vectensis], 3e-94
other nr_hits gi|1005479325|ref|XP_015776391.1|PREDICTED: aquaporin-4-like [Acropora digitifera] 2e-66; gi|1005479315|ref|XP_015776386.1|PREDICTED: aquaporin-5-like [Acropora digitifera] 7e-58; gi|590713403|gb|AHL29028.1|aquaporin, partial [Stagnicola palustris] 4e-50; gi|564113767|gb|AHB64460.1|aquaporin [Portunus trituberculatus] 7e-50; gi|590713144|gb|AHL29026.1|aquaporin, partial [Lymnaea stagnalis] 9e-50; gi|590713289|gb|AHL29027.1|aquaporin, partial [Catascopia terebra] 3e-49; gi|676495895|ref|XP_009067035.1|hypothetical protein LOTGIDRAFT_170145 [Lottia gigantea] 5e-48; gi|336169734|gb|AEI25531.1|aquaporin 1 [Penaeus monodon] 2e-47; gi|999976835|gb|KXJ16009.1|Aquaporin AQPAe.a [Exaiptasia pallida] 7e-47;
NvERTx.4.112503 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.114977 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142060 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166838 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171366 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171368 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171369 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171370 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171371 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185818 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185819 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192786 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192788 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192794 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192798 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203631 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203632 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203633 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.214106 R-2 0.99392117942 E-7 0.999999984783 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.232769 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.234006 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.6779 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.10856 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.19547 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.21747 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.22507 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description gi|156407962|ref|XP_001641626.1|predicted protein [Nematostella vectensis], 3e-18
other nr_hits NA
NvERTx.4.26154 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.31430 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.31522 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.42021 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.46848 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.83229 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.83254 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87738 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113081 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113825 R-6 0.999958458525 E-7 0.999999984659 No_Uniprotmatch No_Description None
other nr_hits NA
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