#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.166810 R-4 0.711028180705 E-7 0.99999999701 NA NA None
other nr_hits NA
NvERTx.4.166811 R-4 0.711028180705 E-7 0.99999999701 Q3UHK3 Protein GREB1 gi|156367138|ref|XP_001627276.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999972037|gb|KXJ11211.1|GREB1-like protein [Exaiptasia pallida] 0e+00; gi|1005449725|ref|XP_015762074.1|PREDICTED: GREB1-like protein [Acropora digitifera] 0e+00; gi|156367140|ref|XP_001627277.1|predicted protein [Nematostella vectensis] 1e-250; gi|1083326095|ref|XP_018613388.1|PREDICTED: LOW QUALITY PROTEIN: GREB1-like protein [Scleropages formosus] 1e-180; gi|984089121|ref|XP_015335457.1|PREDICTED: protein GREB1 isoform X2 [Marmota marmota marmota] 2e-165; gi|928061920|ref|XP_013880478.1|PREDICTED: protein GREB1 isoform X1 [Austrofundulus limnaeus] 6e-154; gi|768956703|ref|XP_011616889.1|PREDICTED: protein GREB1 [Takifugu rubripes] 8e-148; gi|928061924|ref|XP_013880480.1|PREDICTED: protein GREB1 isoform X2 [Austrofundulus limnaeus] 1e-144; gi|1158905068|ref|XP_020357317.1|protein GREB1 [Oncorhynchus kisutch] 3e-141;
NvERTx.4.166812 R-4 0.711028180705 E-7 0.99999999701 No_Uniprotmatch No_Description gi|156367138|ref|XP_001627276.1|predicted protein [Nematostella vectensis], 2e-58
other nr_hits NA
NvERTx.4.166813 R-4 0.711028180705 E-7 0.99999999701 Q3UHK3 Protein GREB1 gi|156367138|ref|XP_001627276.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999972037|gb|KXJ11211.1|GREB1-like protein [Exaiptasia pallida] 0e+00; gi|1005449725|ref|XP_015762074.1|PREDICTED: GREB1-like protein [Acropora digitifera] 0e+00; gi|156367140|ref|XP_001627277.1|predicted protein [Nematostella vectensis] 1e-250; gi|1083326095|ref|XP_018613388.1|PREDICTED: LOW QUALITY PROTEIN: GREB1-like protein [Scleropages formosus] 1e-180; gi|984089121|ref|XP_015335457.1|PREDICTED: protein GREB1 isoform X2 [Marmota marmota marmota] 4e-165; gi|928061920|ref|XP_013880478.1|PREDICTED: protein GREB1 isoform X1 [Austrofundulus limnaeus] 4e-154; gi|768956703|ref|XP_011616889.1|PREDICTED: protein GREB1 [Takifugu rubripes] 1e-147; gi|928061924|ref|XP_013880480.1|PREDICTED: protein GREB1 isoform X2 [Austrofundulus limnaeus] 8e-145; gi|1158905068|ref|XP_020357317.1|protein GREB1 [Oncorhynchus kisutch] 3e-141;
NvERTx.4.166814 R-4 0.711028180705 E-7 0.99999999701 Q9C091 GREB1-like protein gi|156367138|ref|XP_001627276.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999972037|gb|KXJ11211.1|GREB1-like protein [Exaiptasia pallida] 0e+00; gi|1005449725|ref|XP_015762074.1|PREDICTED: GREB1-like protein [Acropora digitifera] 3e-263; gi|1126210238|ref|XP_019638868.1|PREDICTED: GREB1-like protein isoform X2 [Branchiostoma belcheri] 4e-129; gi|260829285|ref|XP_002609592.1|hypothetical protein BRAFLDRAFT_125018 [Branchiostoma floridae] 2e-127; gi|1126210236|ref|XP_019638866.1|PREDICTED: GREB1-like protein isoform X1 [Branchiostoma belcheri] 2e-122; gi|1126210240|ref|XP_019638869.1|PREDICTED: GREB1-like protein isoform X3 [Branchiostoma belcheri] 2e-122; gi|927134817|ref|XP_013911146.1|PREDICTED: GREB1-like protein isoform X6 [Thamnophis sirtalis] 1e-121; gi|584084363|ref|XP_006761944.1|PREDICTED: GREB1-like protein isoform X2 [Myotis davidii] 2e-117; gi|148691052|gb|EDL22999.1|mCG14672 [Mus musculus] 3e-117;
NvERTx.4.206580 R-4 0.711028180705 E-7 0.99999999701 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.217466 R-4 0.711028180705 E-7 0.99999999701 Q9C091 GREB1-like protein gi|156367138|ref|XP_001627276.1|predicted protein [Nematostella vectensis], 2e-35
other nr_hits gi|1005449725|ref|XP_015762074.1|PREDICTED: GREB1-like protein [Acropora digitifera] 1e-30; gi|999972037|gb|KXJ11211.1|GREB1-like protein [Exaiptasia pallida] 5e-30; gi|884927537|ref|XP_013012646.1|PREDICTED: GREB1-like protein isoform X1 [Cavia porcellus] 8e-09; gi|884927539|ref|XP_013012647.1|PREDICTED: GREB1-like protein isoform X2 [Cavia porcellus] 8e-09; gi|260829285|ref|XP_002609592.1|hypothetical protein BRAFLDRAFT_125018 [Branchiostoma floridae] 8e-09; gi|1126210236|ref|XP_019638866.1|PREDICTED: GREB1-like protein isoform X1 [Branchiostoma belcheri] 1e-08; gi|1126210238|ref|XP_019638868.1|PREDICTED: GREB1-like protein isoform X2 [Branchiostoma belcheri] 1e-08; gi|1126210240|ref|XP_019638869.1|PREDICTED: GREB1-like protein isoform X3 [Branchiostoma belcheri] 1e-08; gi|821144227|ref|XP_012377323.1|PREDICTED: GREB1-like protein [Dasypus novemcinctus] 2e-08;
NvERTx.4.225982 R-4 0.711028180705 E-7 0.99999999701 Q9C091 GREB1-like protein gi|156367138|ref|XP_001627276.1|predicted protein [Nematostella vectensis], 4e-17
other nr_hits gi|999972037|gb|KXJ11211.1|GREB1-like protein [Exaiptasia pallida] 6e-13; gi|975126034|ref|XP_015278789.1|PREDICTED: GREB1-like protein [Gekko japonicus] 7e-06; gi|697446754|ref|XP_009665373.1|PREDICTED: GREB1-like protein isoform X1 [Struthio camelus australis] 4e-05; gi|697446757|ref|XP_009665374.1|PREDICTED: GREB1-like protein isoform X2 [Struthio camelus australis] 4e-05; gi|697446763|ref|XP_009665375.1|PREDICTED: GREB1-like protein isoform X3 [Struthio camelus australis] 4e-05; gi|697446769|ref|XP_009665376.1|PREDICTED: GREB1-like protein isoform X4 [Struthio camelus australis] 4e-05; gi|697446773|ref|XP_009665377.1|PREDICTED: GREB1-like protein isoform X5 [Struthio camelus australis] 4e-05; gi|697446809|ref|XP_009665378.1|PREDICTED: GREB1-like protein isoform X6 [Struthio camelus australis] 4e-05; gi|697446812|ref|XP_009665379.1|PREDICTED: GREB1-like protein isoform X7 [Struthio camelus australis] 4e-05;
NvERTx.4.109544 NA NA E-7 0.999999997 No_Uniprotmatch No_Description gi|156389064|ref|XP_001634812.1|predicted protein [Nematostella vectensis], 4e-36
other nr_hits gi|156336444|ref|XP_001619727.1|hypothetical protein NEMVEDRAFT_v1g248833 [Nematostella vectensis] 4e-19; gi|999983930|gb|KXJ23071.1|Glutaredoxin-3 [Exaiptasia pallida] 2e-12;
NvERTx.4.19120 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.19121 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.51483 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.63009 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.63010 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.67375 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.67380 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.73568 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.89993 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98830 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.99295 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.99977 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105238 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.109577 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.109578 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112453 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111393 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111394 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.114248 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.114249 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.114252 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116870 R-7 0.309152362111 E-7 0.999999996918 Q08DJ7 Protein AAR2 homolog gi|156405024|ref|XP_001640532.1|predicted protein [Nematostella vectensis], 6e-204
other nr_hits gi|999986589|gb|KXJ25722.1|Protein AAR2-like [Exaiptasia pallida] 7e-123; gi|1005452861|ref|XP_015763585.1|PREDICTED: protein AAR2 homolog [Acropora digitifera] 2e-116; gi|676492561|ref|XP_009065958.1|hypothetical protein LOTGIDRAFT_222755 [Lottia gigantea] 1e-101; gi|919067949|ref|XP_013415495.1|PREDICTED: protein AAR2 homolog, partial [Lingula anatina] 2e-101; gi|961088854|ref|XP_014771259.1|PREDICTED: protein AAR2 homolog isoform X1 [Octopus bimaculoides] 6e-100; gi|524908100|ref|XP_005109157.1|PREDICTED: protein AAR2 homolog [Aplysia californica] 1e-96; gi|762089120|ref|XP_011426898.1|PREDICTED: protein AAR2 homolog [Crassostrea gigas] 2e-96; gi|926491195|ref|XP_013816993.1|PREDICTED: protein AAR2 homolog [Apteryx australis mantelli] 1e-94; gi|637345341|ref|XP_008117273.1|PREDICTED: protein AAR2 homolog [Anolis carolinensis] 4e-94;
NvERTx.4.122171 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122173 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122174 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122175 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123328 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123329 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125752 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125753 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125755 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125756 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125757 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125758 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125759 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125760 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125761 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136828 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141422 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141935 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141936 R-7 0.309152362111 E-7 0.999999996918 No_Uniprotmatch No_Description None
other nr_hits NA
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