#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.107740 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.107744 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.108270 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.108450 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.117363 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118594 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118604 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118608 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118753 R-7 0.983511605386 E-7 0.999999998918 Q9V3J1 V-type proton ATPase subunit H gi|156389195|ref|XP_001634877.1|predicted protein [Nematostella vectensis], 8e-254
other nr_hits gi|999976050|gb|KXJ15224.1|V-type proton ATPase subunit H [Exaiptasia pallida] 5e-215; gi|1126199288|ref|XP_019632903.1|PREDICTED: V-type proton ATPase subunit H-like [Branchiostoma belcheri] 4e-141; gi|1131309512|gb|JAV05116.1|putative vacuolar h+-atpase v1 sector subunit h [Nyssomyia neivai] 1e-138; gi|1131309508|gb|JAV05114.1|putative vacuolar h+-atpase v1 sector subunit h [Nyssomyia neivai] 2e-138; gi|1131309510|gb|JAV05115.1|putative vacuolar h+-atpase v1 sector subunit h [Nyssomyia neivai] 2e-138; gi|291232889|ref|XP_002736386.1|PREDICTED: V-type proton ATPase subunit H-like [Saccoglossus kowalevskii] 2e-138; gi|260790008|ref|XP_002590036.1|hypothetical protein BRAFLDRAFT_281437 [Branchiostoma floridae] 9e-138; gi|762151426|ref|XP_011413697.1|PREDICTED: V-type proton ATPase subunit H isoform X2 [Crassostrea gigas] 1e-136; gi|751774650|ref|XP_011213954.1|PREDICTED: V-type proton ATPase subunit H isoform X2 [Bactrocera dorsalis] 8e-136;
NvERTx.4.118754 R-7 0.983511605386 E-7 0.999999998918 Q9TVC1 V-type proton ATPase subunit H gi|156389195|ref|XP_001634877.1|predicted protein [Nematostella vectensis], 5e-66
other nr_hits gi|1005439972|ref|XP_015757334.1|PREDICTED: V-type proton ATPase subunit H-like, partial [Acropora digitifera] 1e-55; gi|999976050|gb|KXJ15224.1|V-type proton ATPase subunit H [Exaiptasia pallida] 1e-54; gi|390362113|ref|XP_783560.3|PREDICTED: V-type proton ATPase subunit H [Strongylocentrotus purpuratus] 4e-49; gi|291232889|ref|XP_002736386.1|PREDICTED: V-type proton ATPase subunit H-like [Saccoglossus kowalevskii] 1e-48; gi|762151424|ref|XP_011413696.1|PREDICTED: V-type proton ATPase subunit H isoform X1 [Crassostrea gigas] 5e-48; gi|762151430|ref|XP_011413699.1|PREDICTED: V-type proton ATPase subunit H isoform X4 [Crassostrea gigas] 5e-48; gi|762151426|ref|XP_011413697.1|PREDICTED: V-type proton ATPase subunit H isoform X2 [Crassostrea gigas] 5e-48; gi|762151428|ref|XP_011413698.1|PREDICTED: V-type proton ATPase subunit H isoform X3 [Crassostrea gigas] 5e-48; gi|961109616|ref|XP_014778419.1|PREDICTED: V-type proton ATPase subunit H-like isoform X2 [Octopus bimaculoides] 1e-47;
NvERTx.4.119054 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.119884 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.119886 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.119887 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.119890 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122061 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122073 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122071 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122072 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122074 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.127841 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.129474 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146915 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.157372 R-7 0.983511605386 E-7 0.999999998918 Q9WTP2 Protein sprouty homolog 4 gi|999973040|gb|KXJ12214.1|Protein sprouty-like 4 [Exaiptasia pallida], 2e-23
other nr_hits gi|1005430507|ref|XP_015752991.1|PREDICTED: uncharacterized protein LOC107332755 [Acropora digitifera] 1e-10; gi|156390276|ref|XP_001635197.1|predicted protein [Nematostella vectensis] 4e-05; gi|126015623|gb|ABN70842.1|sprouty [Nematostella vectensis] 4e-05;
NvERTx.4.158030 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158036 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158037 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166633 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168242 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171638 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171653 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171657 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.172239 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176206 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181647 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181648 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181744 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181745 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.187599 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192936 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192937 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194322 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194323 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194325 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194327 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194330 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194332 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194310 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202971 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204353 R-7 0.983511605386 E-7 0.999999998918 No_Uniprotmatch No_Description None
other nr_hits NA
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