#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.186909 R-3 0.639714161315 E-7 0.404017107262 No_Uniprotmatch No_Description gi|156375245|ref|XP_001629992.1|predicted protein [Nematostella vectensis], 2e-06
other nr_hits NA
NvERTx.4.203085 R-3 0.639714161315 E-7 0.404017107262 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203086 R-3 0.639714161315 E-7 0.404017107262 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203088 R-3 0.639714161315 E-7 0.404017107262 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116384 NA NA E-7 0.394209549588 Q7TN88 Polycystic kidney disease protein 1-like 2 gi|156331123|ref|XP_001619147.1|hypothetical protein NEMVEDRAFT_v1g224451 [Nematostella vectensis], 4e-104
other nr_hits gi|156378477|ref|XP_001631169.1|predicted protein [Nematostella vectensis] 5e-86; gi|999979548|gb|KXJ18722.1|Polycystic kidney disease protein 1-like 2 [Exaiptasia pallida] 2e-62; gi|999989465|gb|KXJ28501.1|Polycystic kidney disease protein 1-like 2 [Exaiptasia pallida] 2e-51; gi|999979557|gb|KXJ18731.1|Polycystic kidney disease protein 1-like 2 [Exaiptasia pallida] 4e-51; gi|1005419098|ref|XP_015750976.1|PREDICTED: polycystic kidney disease protein 1-like 2 [Acropora digitifera] 5e-46; gi|156403668|ref|XP_001640030.1|predicted protein [Nematostella vectensis] 7e-45; gi|1005439512|ref|XP_015757139.1|PREDICTED: location of vulva defective 1-like [Acropora digitifera] 2e-44; gi|1005439558|ref|XP_015757159.1|PREDICTED: polycystic kidney disease protein 1-like 2 [Acropora digitifera] 1e-41; gi|1005485034|ref|XP_015779129.1|PREDICTED: polycystic kidney disease protein 1-like 2 [Acropora digitifera] 2e-41;
NvERTx.4.118179 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118180 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118196 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118197 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118199 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118191 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118192 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118193 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118195 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131313 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131314 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131315 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131326 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133543 R-4 0.999619234299 E-7 0.348458919899 Q68D91 Metallo-beta-lactamase domain-containing protein 2 gi|156402680|ref|XP_001639718.1|predicted protein [Nematostella vectensis], 7e-188
other nr_hits gi|156402862|ref|XP_001639809.1|predicted protein [Nematostella vectensis] 3e-78; gi|1005475903|ref|XP_015774718.1|PREDICTED: metallo-beta-lactamase domain-containing protein 2-like [Acropora digitifera] 6e-64; gi|1126204960|ref|XP_019635990.1|PREDICTED: metallo-beta-lactamase domain-containing protein 2-like [Branchiostoma belcheri] 3e-63; gi|999983536|gb|KXJ22677.1|Metallo-beta-lactamase domain-containing protein 2 [Exaiptasia pallida] 1e-60; gi|156359928|ref|XP_001625015.1|predicted protein [Nematostella vectensis] 3e-54; gi|632951515|ref|XP_007891335.1|PREDICTED: LOW QUALITY PROTEIN: metallo-beta-lactamase domain-containing protein 2 [Callorhinchus milii] 3e-51; gi|938062468|gb|KPP64227.1|metallo-beta-lactamase domain-containing protein 2-like, partial [Scleropages formosus] 2e-50; gi|929300985|ref|XP_014027930.1|PREDICTED: metallo-beta-lactamase domain-containing protein 2-like [Salmo salar] 8e-50; gi|831303927|ref|XP_012684084.1|PREDICTED: metallo-beta-lactamase domain-containing protein 2 [Clupea harengus] 2e-49;
NvERTx.4.133546 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133547 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133548 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133549 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133558 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133561 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133562 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145233 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145234 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156468 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156470 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156469 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156473 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156477 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198948 R-4 0.999619234299 E-7 0.348458919899 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.220699 R-4 0.999619234299 E-7 0.348458919899 Q68D91 Metallo-beta-lactamase domain-containing protein 2 gi|156402680|ref|XP_001639718.1|predicted protein [Nematostella vectensis], 5e-124
other nr_hits gi|156402862|ref|XP_001639809.1|predicted protein [Nematostella vectensis] 8e-51; gi|999983536|gb|KXJ22677.1|Metallo-beta-lactamase domain-containing protein 2 [Exaiptasia pallida] 8e-48; gi|1005475903|ref|XP_015774718.1|PREDICTED: metallo-beta-lactamase domain-containing protein 2-like [Acropora digitifera] 4e-46; gi|156359928|ref|XP_001625015.1|predicted protein [Nematostella vectensis] 8e-43; gi|156402864|ref|XP_001639810.1|predicted protein [Nematostella vectensis] 3e-40; gi|632951515|ref|XP_007891335.1|PREDICTED: LOW QUALITY PROTEIN: metallo-beta-lactamase domain-containing protein 2 [Callorhinchus milii] 1e-39; gi|929300985|ref|XP_014027930.1|PREDICTED: metallo-beta-lactamase domain-containing protein 2-like [Salmo salar] 4e-39; gi|1072259026|ref|XP_018414736.1|PREDICTED: metallo-beta-lactamase domain-containing protein 2 [Nanorana parkeri] 5e-39; gi|1158860056|ref|XP_020323722.1|metallo-beta-lactamase domain-containing protein 2-like [Oncorhynchus kisutch] 9e-39;
NvERTx.4.109289 R-3 0.645785806795 E-7 0.262719313018 P59722 Egl nine homolog 1 gi|156379198|ref|XP_001631345.1|predicted protein [Nematostella vectensis], 3e-38
other nr_hits gi|354801528|gb|AER39530.1|egl nine 1-like protein, partial [Acipenser gueldenstaedtii] 7e-21; gi|919020974|ref|XP_013394386.1|PREDICTED: egl nine homolog 3-like [Lingula anatina] 9e-21; gi|1104690825|gb|APD76527.1|egl-9 family hypoxia-inducible factor 1a [Megalobrama amblycephala] 2e-20; gi|1025366884|ref|XP_016396695.1|PREDICTED: egl nine homolog 1-like isoform X1 [Sinocyclocheilus rhinocerous] 3e-20; gi|1025366887|ref|XP_016396696.1|PREDICTED: egl nine homolog 1-like isoform X2 [Sinocyclocheilus rhinocerous] 3e-20; gi|1025366891|ref|XP_016396697.1|PREDICTED: egl nine homolog 1-like isoform X3 [Sinocyclocheilus rhinocerous] 3e-20; gi|1020514978|ref|XP_016096741.1|PREDICTED: egl nine homolog 1-like isoform X1 [Sinocyclocheilus grahami] 3e-20; gi|1020514980|ref|XP_016096742.1|PREDICTED: egl nine homolog 1-like isoform X2 [Sinocyclocheilus grahami] 3e-20; gi|1020514982|ref|XP_016096743.1|PREDICTED: egl nine homolog 1-like isoform X3 [Sinocyclocheilus grahami] 3e-20;
NvERTx.4.219765 R-3 0.645785806795 E-7 0.262719313018 Q9H6Z9 Egl nine homolog 3 gi|156379198|ref|XP_001631345.1|predicted protein [Nematostella vectensis], 2e-28
other nr_hits gi|1158878487|ref|XP_020343338.1|egl nine homolog 3 [Oncorhynchus kisutch] 1e-16; gi|642123771|embl|CDQ62710.1|unnamed protein product [Oncorhynchus mykiss] 1e-16; gi|1005966003|ref|XP_015791015.1|PREDICTED: egl nine homolog 1-like [Tetranychus urticae] 2e-16; gi|831300571|ref|XP_012682251.1|PREDICTED: egl nine homolog 3 isoform X1 [Clupea harengus] 2e-16; gi|831300573|ref|XP_012682252.1|PREDICTED: egl nine homolog 3 isoform X2 [Clupea harengus] 2e-16; gi|632951929|ref|XP_007891568.1|PREDICTED: egl nine homolog 3 [Callorhinchus milii] 2e-16; gi|742193355|ref|XP_010891256.1|PREDICTED: egl nine homolog 3 [Esox lucius] 3e-16; gi|1021311921|ref|NP_001310714.1|egl nine homolog 3 [Cyprinodon variegatus] 3e-16; gi|1042374767|ref|XP_017331746.1|PREDICTED: egl nine homolog 3 isoform X1 [Ictalurus punctatus] 4e-16;
NvERTx.4.29825 R-1 0.221035284157 E-7 0.254228280692 No_Uniprotmatch No_Description gi|156380048|ref|XP_001631767.1|predicted protein [Nematostella vectensis], 1e-20
other nr_hits NA
NvERTx.4.34990 R-1 0.221035284157 E-7 0.254228280692 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.119969 R-1 0.221035284157 E-7 0.254228280692 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.187959 R-1 0.221035284157 E-7 0.254228280692 Q86YW9 Mediator of RNA polymerase II transcription subunit 12-like protein gi|999978129|gb|KXJ17303.1|Mediator of RNA polymerase II transcription subunit 12 [Exaiptasia pallida], 2e-41
other nr_hits gi|1005447627|ref|XP_015761097.1|PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein [Acropora digitifera] 3e-31; gi|971411746|ref|XP_015147314.1|PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X1 [Gallus gallus] 6e-24; gi|971411748|ref|XP_015147315.1|PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X2 [Gallus gallus] 6e-24; gi|971411750|ref|XP_015147316.1|PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X3 [Gallus gallus] 6e-24; gi|971411752|ref|XP_015147317.1|PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X4 [Gallus gallus] 6e-24; gi|971411754|ref|XP_015147318.1|PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X5 [Gallus gallus] 6e-24; gi|971411756|ref|XP_015147319.1|PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X6 [Gallus gallus] 6e-24; gi|971411758|ref|XP_015147320.1|PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X7 [Gallus gallus] 6e-24; gi|971411760|ref|XP_015147321.1|PREDICTED: mediator of RNA polymerase II transcription subunit 12-like protein isoform X8 [Gallus gallus] 6e-24;