#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.71283 NA NA E-7 0.91345247009 A0A0L8GKB2_OCTBM Uncharacterized protein {ECO:0000313|EMBL:KOF76980.1} gi|961115455|ref|XP_014780580.1|PREDICTED: serine-rich adhesin for platelets-like [Octopus bimaculoides], 3e-16
other nr_hits gi|676484348|ref|XP_009063317.1|hypothetical protein LOTGIDRAFT_130006, partial [Lottia gigantea] 5e-10; gi|521037568|gb|EPQ19346.1|PAX-interacting protein 1 [Myotis brandtii] 4e-09; gi|817060233|ref|XP_012251660.1|PREDICTED: nuclear pore complex protein DDB_G0274915 isoform X1 [Athalia rosae] 2e-08; gi|817060235|ref|XP_012251661.1|PREDICTED: nuclear pore complex protein DDB_G0274915 isoform X2 [Athalia rosae] 2e-08; gi|344251792|gb|EGW07896.1|Transmembrane protein C9orf144B-like [Cricetulus griseus] 5e-08; gi|502166573|ref|XP_004513928.1|PREDICTED: nuclear pore complex protein NUP62 [Cicer arietinum] 8e-08; gi|1134824068|gb|OMJ27784.1|hypothetical protein AYI69_g2768 [Smittium culicis] 3e-07; gi|677308475|gb|KFP90903.1|DBF4-type zinc finger-containing protein 2, partial [Apaloderma vittatum] 5e-07; gi|1105281956|gb|OJG18687.1|hypothetical protein RR47_GL001736 [Enterococcus columbae DSM 7374 = ATCC 51263] 1e-06;
NvERTx.4.71284 NA NA E-7 0.91345247009 A0A0L8GKB2_OCTBM Uncharacterized protein {ECO:0000313|EMBL:KOF76980.1} gi|961115455|ref|XP_014780580.1|PREDICTED: serine-rich adhesin for platelets-like [Octopus bimaculoides], 2e-17
other nr_hits gi|676484348|ref|XP_009063317.1|hypothetical protein LOTGIDRAFT_130006, partial [Lottia gigantea] 6e-10; gi|521037568|gb|EPQ19346.1|PAX-interacting protein 1 [Myotis brandtii] 6e-10; gi|502166573|ref|XP_004513928.1|PREDICTED: nuclear pore complex protein NUP62 [Cicer arietinum] 5e-09; gi|817060233|ref|XP_012251660.1|PREDICTED: nuclear pore complex protein DDB_G0274915 isoform X1 [Athalia rosae] 9e-09; gi|817060235|ref|XP_012251661.1|PREDICTED: nuclear pore complex protein DDB_G0274915 isoform X2 [Athalia rosae] 9e-09; gi|1134824068|gb|OMJ27784.1|hypothetical protein AYI69_g2768 [Smittium culicis] 3e-08; gi|344251792|gb|EGW07896.1|Transmembrane protein C9orf144B-like [Cricetulus griseus] 1e-07; gi|1105281956|gb|OJG18687.1|hypothetical protein RR47_GL001736 [Enterococcus columbae DSM 7374 = ATCC 51263] 4e-07; gi|1150687738|ref|XP_020255027.1|nuclear pore complex protein NUP98A isoform X1 [Asparagus officinalis] 5e-07;
NvERTx.4.71285 NA NA E-7 0.91345247009 A0A0L8GKB2_OCTBM Uncharacterized protein {ECO:0000313|EMBL:KOF76980.1} gi|961115455|ref|XP_014780580.1|PREDICTED: serine-rich adhesin for platelets-like [Octopus bimaculoides], 8e-15
other nr_hits gi|817060233|ref|XP_012251660.1|PREDICTED: nuclear pore complex protein DDB_G0274915 isoform X1 [Athalia rosae] 1e-08; gi|817060235|ref|XP_012251661.1|PREDICTED: nuclear pore complex protein DDB_G0274915 isoform X2 [Athalia rosae] 1e-08; gi|521037568|gb|EPQ19346.1|PAX-interacting protein 1 [Myotis brandtii] 1e-07; gi|502166573|ref|XP_004513928.1|PREDICTED: nuclear pore complex protein NUP62 [Cicer arietinum] 1e-06; gi|676484348|ref|XP_009063317.1|hypothetical protein LOTGIDRAFT_130006, partial [Lottia gigantea] 1e-06; gi|1134824068|gb|OMJ27784.1|hypothetical protein AYI69_g2768 [Smittium culicis] 2e-06; gi|778712216|ref|XP_011656864.1|PREDICTED: LOW QUALITY PROTEIN: nuclear pore complex protein NUP62 [Cucumis sativus] 7e-06; gi|700191351|gb|KGN46555.1|hypothetical protein Csa_6G108530 [Cucumis sativus] 7e-06; gi|344251792|gb|EGW07896.1|Transmembrane protein C9orf144B-like [Cricetulus griseus] 9e-06;
NvERTx.4.71286 NA NA E-7 0.91345247009 A0A0L8GKB2_OCTBM Uncharacterized protein {ECO:0000313|EMBL:KOF76980.1} gi|961115455|ref|XP_014780580.1|PREDICTED: serine-rich adhesin for platelets-like [Octopus bimaculoides], 8e-12
other nr_hits gi|676484348|ref|XP_009063317.1|hypothetical protein LOTGIDRAFT_130006, partial [Lottia gigantea] 2e-07; gi|521037568|gb|EPQ19346.1|PAX-interacting protein 1 [Myotis brandtii] 5e-06; gi|817060233|ref|XP_012251660.1|PREDICTED: nuclear pore complex protein DDB_G0274915 isoform X1 [Athalia rosae] 2e-05; gi|817060235|ref|XP_012251661.1|PREDICTED: nuclear pore complex protein DDB_G0274915 isoform X2 [Athalia rosae] 2e-05; gi|971514234|dbj|GAQ83987.1|structural constituent of nuclear pore [Klebsormidium flaccidum] 2e-05; gi|926778116|ref|XP_013897532.1|hypothetical protein MNEG_9449 [Monoraphidium neglectum] 2e-05;
NvERTx.4.71287 NA NA E-7 0.91345247009 No_Uniprotmatch No_Description gi|908494457|ref|XP_013096564.1|PREDICTED: protein PBMUCL2-like [Biomphalaria glabrata], 9e-08
other nr_hits NA
NvERTx.4.71291 NA NA E-7 0.91345247009 A0A0L8GKB2_OCTBM Uncharacterized protein {ECO:0000313|EMBL:KOF76980.1} gi|961115455|ref|XP_014780580.1|PREDICTED: serine-rich adhesin for platelets-like [Octopus bimaculoides], 2e-11
other nr_hits gi|676484348|ref|XP_009063317.1|hypothetical protein LOTGIDRAFT_130006, partial [Lottia gigantea] 1e-05; gi|344251792|gb|EGW07896.1|Transmembrane protein C9orf144B-like [Cricetulus griseus] 2e-05; gi|677308475|gb|KFP90903.1|DBF4-type zinc finger-containing protein 2, partial [Apaloderma vittatum] 2e-05; gi|504502659|ref|WP_014689761.1|hypothetical protein [Actinoplanes sp. SE50/110] 3e-05; gi|521037568|gb|EPQ19346.1|PAX-interacting protein 1 [Myotis brandtii] 3e-05;
NvERTx.4.71294 NA NA E-7 0.91345247009 A0A182YVV1_BIOGL Uncharacterized protein {ECO:0000313|VectorBase:BGLB001009-PA} gi|1058052311|gb|JAS29817.1|hypothetical protein g.13103, partial [Clastoptera arizonana], 1e-05
other nr_hits gi|675370545|gb|KFM63447.1|hypothetical protein X975_12277, partial [Stegodyphus mimosarum] 1e-05; gi|657937141|ref|WP_029638241.1|hypothetical protein [[Scytonema hofmanni] 4e-05;
NvERTx.4.71295 NA NA E-7 0.91345247009 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71296 NA NA E-7 0.91345247009 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.232276 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.9830 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.18103 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description gi|156395912|ref|XP_001637354.1|predicted protein [Nematostella vectensis], 2e-29
other nr_hits gi|999971935|gb|KXJ11109.1|Beta-amyloid-like protein [Exaiptasia pallida] 2e-05;
NvERTx.4.37389 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.3393 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90398 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90400 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92506 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92510 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101858 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122763 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125373 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143287 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145525 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145534 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146792 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.155972 R-6 0.670865975418 E-7 0.911420353657 P79307 Amyloid beta A4 protein gi|156395912|ref|XP_001637354.1|predicted protein [Nematostella vectensis], 5e-166
other nr_hits gi|999971935|gb|KXJ11109.1|Beta-amyloid-like protein [Exaiptasia pallida] 3e-86; gi|221121236|ref|XP_002154415.1|PREDICTED: beta-amyloid-like protein [Hydra vulgaris] 1e-54; gi|1101527004|ref|XP_018929162.1|PREDICTED: amyloid beta A4 protein-like [Cyprinus carpio] 3e-43; gi|2760621|dbj|BAA24230.1|EL amyloid precursor protein 699 [Narke japonica] 1e-42; gi|1007766175|ref|XP_015821712.1|PREDICTED: amyloid beta A4 protein-like isoform X1 [Nothobranchius furzeri] 2e-42; gi|1007766178|ref|XP_015821713.1|PREDICTED: amyloid beta A4 protein-like isoform X2 [Nothobranchius furzeri] 2e-42; gi|1126206250|ref|XP_019636696.1|PREDICTED: amyloid-like protein 2 isoform X6 [Branchiostoma belcheri] 1e-41; gi|1126206244|ref|XP_019636693.1|PREDICTED: amyloid-like protein 2 isoform X3 [Branchiostoma belcheri] 1e-41; gi|1126206248|ref|XP_019636695.1|PREDICTED: amyloid beta A4 protein-like isoform X5 [Branchiostoma belcheri] 1e-41;
NvERTx.4.155973 R-6 0.670865975418 E-7 0.911420353657 Q10651 Beta-amyloid-like protein {ECO:0000305} gi|156395912|ref|XP_001637354.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999971935|gb|KXJ11109.1|Beta-amyloid-like protein [Exaiptasia pallida] 3e-155; gi|1005455876|ref|XP_015765072.1|PREDICTED: amyloid-like protein 2, partial [Acropora digitifera] 1e-96; gi|221121236|ref|XP_002154415.1|PREDICTED: beta-amyloid-like protein [Hydra vulgaris] 3e-83; gi|1126206246|ref|XP_019636694.1|PREDICTED: amyloid-like protein 2 isoform X4 [Branchiostoma belcheri] 2e-67; gi|1101527004|ref|XP_018929162.1|PREDICTED: amyloid beta A4 protein-like [Cyprinus carpio] 2e-67; gi|1126206244|ref|XP_019636693.1|PREDICTED: amyloid-like protein 2 isoform X3 [Branchiostoma belcheri] 9e-66; gi|1126206250|ref|XP_019636696.1|PREDICTED: amyloid-like protein 2 isoform X6 [Branchiostoma belcheri] 3e-65; gi|1126206248|ref|XP_019636695.1|PREDICTED: amyloid beta A4 protein-like isoform X5 [Branchiostoma belcheri] 3e-65; gi|1126206242|ref|XP_019636692.1|PREDICTED: amyloid beta A4 protein-like isoform X2 [Branchiostoma belcheri] 3e-65;
NvERTx.4.161856 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161858 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.178961 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.187263 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189184 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189187 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189188 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196083 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196084 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196085 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196088 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202359 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202362 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.214938 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.225506 R-6 0.670865975418 E-7 0.911420353657 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.7441 NA NA E-7 0.911396611447 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169847 NA NA E-7 0.911396611447 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198029 NA NA E-7 0.911396611447 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.26601 R-3 0.931634060352 E-7 0.911315174707 Q86VD9 GPI mannosyltransferase 4 gi|156388171|ref|XP_001634575.1|predicted protein [Nematostella vectensis], 4e-250
other nr_hits gi|1005421391|ref|XP_015761623.1|PREDICTED: GPI mannosyltransferase 4-like [Acropora digitifera] 2e-108; gi|919035533|ref|XP_013401272.1|PREDICTED: GPI mannosyltransferase 4-like [Lingula anatina] 7e-82; gi|585642827|ref|XP_006811249.1|PREDICTED: GPI mannosyltransferase 4-like [Saccoglossus kowalevskii] 1e-77; gi|957830706|ref|XP_014665306.1|PREDICTED: GPI mannosyltransferase 4-like [Priapulus caudatus] 6e-77; gi|632934031|ref|XP_007896992.1|PREDICTED: GPI mannosyltransferase 4-like [Callorhinchus milii] 9e-77; gi|632934024|ref|XP_007896713.1|PREDICTED: GPI mannosyltransferase 4-like [Callorhinchus milii] 1e-76; gi|926645886|ref|XP_013789266.1|PREDICTED: GPI mannosyltransferase 4-like [Limulus polyphemus] 2e-74; gi|591384435|ref|XP_007066671.1|PREDICTED: LOW QUALITY PROTEIN: GPI mannosyltransferase 4 [Chelonia mydas] 2e-73; gi|260817114|ref|XP_002603432.1|hypothetical protein BRAFLDRAFT_136738 [Branchiostoma floridae] 1e-72;
NvERTx.4.206575 R-3 0.931634060352 E-7 0.911315174707 Q8BTP0 GPI mannosyltransferase 4 gi|156388171|ref|XP_001634575.1|predicted protein [Nematostella vectensis], 4e-67
other nr_hits gi|1005421391|ref|XP_015761623.1|PREDICTED: GPI mannosyltransferase 4-like [Acropora digitifera] 9e-25; gi|632934024|ref|XP_007896713.1|PREDICTED: GPI mannosyltransferase 4-like [Callorhinchus milii] 2e-24; gi|632934031|ref|XP_007896992.1|PREDICTED: GPI mannosyltransferase 4-like [Callorhinchus milii] 2e-23; gi|919035533|ref|XP_013401272.1|PREDICTED: GPI mannosyltransferase 4-like [Lingula anatina] 2e-23; gi|1023026257|ref|XP_016280181.1|PREDICTED: LOW QUALITY PROTEIN: GPI mannosyltransferase 4 [Monodelphis domestica] 8e-23; gi|685528281|ref|XP_009200281.1|PREDICTED: GPI mannosyltransferase 4 isoform X1 [Papio anubis] 1e-22; gi|402862015|ref|XP_003895367.1|PREDICTED: GPI mannosyltransferase 4 isoform X2 [Papio anubis] 1e-22; gi|795307720|ref|XP_011816577.1|PREDICTED: GPI mannosyltransferase 4 [Colobus angolensis palliatus] 2e-22; gi|1059182798|ref|XP_017747696.1|PREDICTED: nuclear cap-binding protein subunit 2 isoform X1 [Rhinopithecus bieti] 3e-22;
NvERTx.4.215947 R-3 0.931634060352 E-7 0.911315174707 No_Uniprotmatch No_Description gi|156388171|ref|XP_001634575.1|predicted protein [Nematostella vectensis], 5e-05
other nr_hits NA
NvERTx.4.220854 R-3 0.931634060352 E-7 0.911315174707 No_Uniprotmatch No_Description gi|156388171|ref|XP_001634575.1|predicted protein [Nematostella vectensis], 3e-32
other nr_hits NA
NvERTx.4.230409 R-9 0.900051825837 E-7 0.911191906603 No_Uniprotmatch No_Description gi|156383314|ref|XP_001632779.1|predicted protein [Nematostella vectensis], 2e-35
other nr_hits gi|156344604|ref|XP_001621247.1|hypothetical protein NEMVEDRAFT_v1g222206 [Nematostella vectensis] 2e-07;
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