#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.44560 R-4 0.974400680442 E-6 0.386215597918 B0ENJ9_ENTDS Caldesmon, putative {ECO:0000313|EMBL:EDR23880.1} gi|156388216|ref|XP_001634597.1|predicted protein [Nematostella vectensis], 5e-94
other nr_hits gi|167391308|ref|XP_001739716.1|caldesmon [Entamoeba dispar SAW760] 1e-05; gi|1111498150|embl|CVL02698.1|related to kinesin-like protein [Fusarium mangiferae] 2e-05;
NvERTx.4.49338 R-4 0.974400680442 E-6 0.386215597918 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.54489 R-4 0.974400680442 E-6 0.386215597918 No_Uniprotmatch No_Description gi|156388216|ref|XP_001634597.1|predicted protein [Nematostella vectensis], 2e-128
other nr_hits NA
NvERTx.4.92001 R-4 0.713899715647 E-6 0.38413925133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92004 R-4 0.713899715647 E-6 0.38413925133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92005 R-4 0.713899715647 E-6 0.38413925133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92006 R-4 0.713899715647 E-6 0.38413925133 No_Uniprotmatch No_Description None
other nr_hits NA