#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

Search by gene name


Search by NvERTx ID





Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.96904 R-1 0.584122226796 E-6 0.536005537071 No_Uniprotmatch No_Description gi|156359844|ref|XP_001624974.1|predicted protein [Nematostella vectensis], 5e-83
other nr_hits gi|156397386|ref|XP_001637872.1|predicted protein [Nematostella vectensis] 1e-80; gi|156355321|ref|XP_001623618.1|predicted protein [Nematostella vectensis] 2e-80; gi|156359971|ref|XP_001625036.1|predicted protein [Nematostella vectensis] 2e-78; gi|156355435|ref|XP_001623673.1|predicted protein [Nematostella vectensis] 2e-70; gi|999969870|gb|KXJ09044.1|hypothetical protein AC249_AIPGENE26930 [Exaiptasia pallida] 1e-62; gi|999968688|gb|KXJ07862.1|hypothetical protein AC249_AIPGENE9598 [Exaiptasia pallida] 7e-60; gi|156321113|ref|XP_001618212.1|hypothetical protein NEMVEDRAFT_v1g225385 [Nematostella vectensis] 1e-53; gi|156346857|ref|XP_001621552.1|hypothetical protein NEMVEDRAFT_v1g221848 [Nematostella vectensis] 1e-48; gi|999970270|gb|KXJ09444.1|hypothetical protein AC249_AIPGENE6090 [Exaiptasia pallida] 4e-46;
NvERTx.4.189681 R-1 0.584122226796 E-6 0.536005537071 Q5URB9 Putative ankyrin repeat protein R840 gi|156368235|ref|XP_001627601.1|predicted protein [Nematostella vectensis], 5e-30
other nr_hits NA
NvERTx.4.189682 R-1 0.584122226796 E-6 0.536005537071 Q5URB9 Putative ankyrin repeat protein R840 gi|156368235|ref|XP_001627601.1|predicted protein [Nematostella vectensis], 1e-21
other nr_hits NA
NvERTx.4.205441 R-1 0.584122226796 E-6 0.536005537071 No_Uniprotmatch No_Description gi|156392672|ref|XP_001636172.1|predicted protein [Nematostella vectensis], 2e-25
other nr_hits gi|156379835|ref|XP_001631661.1|predicted protein [Nematostella vectensis] 3e-25; gi|156359844|ref|XP_001624974.1|predicted protein [Nematostella vectensis] 9e-25;
NvERTx.4.126316 R-6 0.705800011834 E-6 0.535770878883 No_Uniprotmatch No_Description gi|156401452|ref|XP_001639305.1|predicted protein [Nematostella vectensis], 9e-121
other nr_hits NA
NvERTx.4.126317 R-6 0.705800011834 E-6 0.535770878883 No_Uniprotmatch No_Description gi|156401452|ref|XP_001639305.1|predicted protein [Nematostella vectensis], 4e-123
other nr_hits NA
NvERTx.4.126318 R-6 0.705800011834 E-6 0.535770878883 No_Uniprotmatch No_Description gi|156401452|ref|XP_001639305.1|predicted protein [Nematostella vectensis], 2e-70
other nr_hits NA
NvERTx.4.126319 R-6 0.705800011834 E-6 0.535770878883 A3TIU5_9MICO Putative iron-sulphur-binding reductase {ECO:0000313|EMBL:EAQ00759.1} gi|156401452|ref|XP_001639305.1|predicted protein [Nematostella vectensis], 7e-310
other nr_hits gi|84384879|gb|EAQ00759.1|putative iron-sulphur-binding reductase [Janibacter sp. HTCC2649] 4e-09; gi|389594453|ref|XP_003722449.1|proteophosphoglycan 5 [Leishmania major strain Friedlin] 3e-08; gi|632990881|ref|XP_007884372.1|PREDICTED: mucin-5AC-like, partial [Callorhinchus milii] 5e-08; gi|1069843644|gb|OEH78353.1|cyst germination specific acidic repeat protein precursor [Cyclospora cayetanensis] 6e-08; gi|396466221|ref|XP_003837642.1|predicted protein [Leptosphaeria maculans JN3] 2e-07; gi|1105523747|embl|SGZ57930.1|CIC11C00000004205 [[Candida] 5e-07; gi|389594451|ref|XP_003722448.1|proteophosphoglycan ppg4 [Leishmania major strain Friedlin] 7e-07; gi|389594455|ref|XP_003722450.1|proteophosphoglycan ppg1 [Leishmania major strain Friedlin] 9e-07; gi|939647236|ref|XP_014273334.1|PREDICTED: nuclear pore complex protein Nup214-like [Halyomorpha halys] 3e-06;
NvERTx.4.126320 R-6 0.705800011834 E-6 0.535770878883 S8A0L6_DACHA Uncharacterized protein {ECO:0000313|EMBL:EPS36229.1} gi|156401452|ref|XP_001639305.1|predicted protein [Nematostella vectensis], 6e-305
other nr_hits gi|748522108|ref|XP_011115766.1|hypothetical protein H072_10288 [Dactylellina haptotyla CBS 200.50] 1e-08; gi|632990881|ref|XP_007884372.1|PREDICTED: mucin-5AC-like, partial [Callorhinchus milii] 3e-08; gi|1069843644|gb|OEH78353.1|cyst germination specific acidic repeat protein precursor [Cyclospora cayetanensis] 8e-08; gi|389594453|ref|XP_003722449.1|proteophosphoglycan 5 [Leishmania major strain Friedlin] 1e-07; gi|1105523747|embl|SGZ57930.1|CIC11C00000004205 [[Candida] 3e-07; gi|84384879|gb|EAQ00759.1|putative iron-sulphur-binding reductase [Janibacter sp. HTCC2649] 8e-07; gi|389594451|ref|XP_003722448.1|proteophosphoglycan ppg4 [Leishmania major strain Friedlin] 2e-06; gi|813209273|dbj|GAO49726.1|hypothetical protein G7K_3869-t1 [Saitoella complicata NRRL Y-17804] 2e-06; gi|630181607|ref|XP_007845532.1|nucleoporin nup189 [Moniliophthora roreri MCA 2997] 4e-06;
NvERTx.4.126321 R-6 0.705800011834 E-6 0.535770878883 No_Uniprotmatch No_Description gi|156401452|ref|XP_001639305.1|predicted protein [Nematostella vectensis], 9e-42
other nr_hits NA
NvERTx.4.126322 R-6 0.705800011834 E-6 0.535770878883 No_Uniprotmatch No_Description gi|156401452|ref|XP_001639305.1|predicted protein [Nematostella vectensis], 6e-11
other nr_hits NA
NvERTx.4.126325 R-6 0.705800011834 E-6 0.535770878883 No_Uniprotmatch No_Description gi|156401452|ref|XP_001639305.1|predicted protein [Nematostella vectensis], 8e-14
other nr_hits NA
NvERTx.4.212106 R-6 0.705800011834 E-6 0.535770878883 No_Uniprotmatch No_Description gi|156401452|ref|XP_001639305.1|predicted protein [Nematostella vectensis], 1e-27
other nr_hits NA
NvERTx.4.234132 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165049 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165059 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165050 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165051 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165052 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165053 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165054 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165055 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165058 R-1 0.979113497526 E-6 0.535050401941 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91402 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91404 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103282 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103280 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103281 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.107350 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description gi|156394001|ref|XP_001636615.1|predicted protein [Nematostella vectensis], 5e-15
other nr_hits gi|156404420|ref|XP_001640405.1|predicted protein [Nematostella vectensis] 1e-13;
NvERTx.4.107351 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136533 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161407 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193038 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193044 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description gi|1005444442|ref|XP_015759559.1|PREDICTED: uncharacterized protein LOC107338822 [Acropora digitifera], 2e-09
other nr_hits NA
NvERTx.4.193047 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193048 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193039 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193046 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193049 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199698 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199701 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199705 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199710 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199713 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199702 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199704 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199712 R-7 0.211819008075 E-6 0.534158015807 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193756 R-1 0.708278794234 E-6 0.53390702127 A0A151IU93_9HYME Uncharacterized protein {ECO:0000313|EMBL:KYN10795.1} gi|156360847|ref|XP_001625235.1|predicted protein [Nematostella vectensis], 1e-90
other nr_hits gi|999985751|gb|KXJ24892.1|hypothetical protein AC249_AIPGENE6777 [Exaiptasia pallida] 4e-44; gi|156408900|ref|XP_001642094.1|predicted protein [Nematostella vectensis] 1e-42; gi|1005433948|ref|XP_015754493.1|PREDICTED: uncharacterized protein LOC107334107 [Acropora digitifera] 2e-42; gi|1005432165|ref|XP_015753697.1|PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107333394, partial [Acropora digitifera] 6e-39; gi|1005459172|ref|XP_015766708.1|PREDICTED: uncharacterized protein LOC107345505 [Acropora digitifera] 2e-36; gi|999972363|gb|KXJ11537.1|hypothetical protein AC249_AIPGENE5476 [Exaiptasia pallida] 5e-34; gi|999977111|gb|KXJ16285.1|hypothetical protein AC249_AIPGENE28275 [Exaiptasia pallida] 2e-30; gi|780016035|ref|XP_011664432.1|PREDICTED: uncharacterized protein LOC105438389 [Strongylocentrotus purpuratus] 2e-29; gi|999978823|gb|KXJ17997.1|Protein piccolo [Exaiptasia pallida] 1e-18;
NvERTx.4.193768 R-1 0.708278794234 E-6 0.53390702127 No_Uniprotmatch No_Description gi|999972500|gb|KXJ11674.1|hypothetical protein AC249_AIPGENE7119 [Exaiptasia pallida], 1e-70
other nr_hits gi|999968647|gb|KXJ07821.1|hypothetical protein AC249_AIPGENE26907 [Exaiptasia pallida] 1e-69; gi|999983289|gb|KXJ22430.1|Transmembrane protease serine 13 [Exaiptasia pallida] 9e-62; gi|999968049|gb|KXJ07223.1|Transposon Ty3-I Gag-Pol polyprotein, partial [Exaiptasia pallida] 2e-57; gi|999967569|gb|KXJ06743.1|Wall-associated receptor kinase-like 21 [Exaiptasia pallida] 2e-56; gi|999969796|gb|KXJ08970.1|hypothetical protein AC249_AIPGENE7865 [Exaiptasia pallida] 2e-55; gi|999989622|gb|KXJ28656.1|hypothetical protein AC249_AIPGENE19386 [Exaiptasia pallida] 6e-54; gi|999967812|gb|KXJ06986.1|hypothetical protein AC249_AIPGENE18630 [Exaiptasia pallida] 2e-51; gi|999968657|gb|KXJ07831.1|hypothetical protein AC249_AIPGENE5272 [Exaiptasia pallida] 4e-49; gi|999975502|gb|KXJ14676.1|hypothetical protein AC249_AIPGENE20505 [Exaiptasia pallida] 7e-47;
NvERTx.4.193774 R-1 0.708278794234 E-6 0.53390702127 No_Uniprotmatch No_Description gi|999972500|gb|KXJ11674.1|hypothetical protein AC249_AIPGENE7119 [Exaiptasia pallida], 8e-71
other nr_hits gi|999968647|gb|KXJ07821.1|hypothetical protein AC249_AIPGENE26907 [Exaiptasia pallida] 9e-70; gi|999983289|gb|KXJ22430.1|Transmembrane protease serine 13 [Exaiptasia pallida] 7e-62; gi|999968049|gb|KXJ07223.1|Transposon Ty3-I Gag-Pol polyprotein, partial [Exaiptasia pallida] 1e-57; gi|999967569|gb|KXJ06743.1|Wall-associated receptor kinase-like 21 [Exaiptasia pallida] 1e-56; gi|999969796|gb|KXJ08970.1|hypothetical protein AC249_AIPGENE7865 [Exaiptasia pallida] 2e-55; gi|999989622|gb|KXJ28656.1|hypothetical protein AC249_AIPGENE19386 [Exaiptasia pallida] 4e-54; gi|999967812|gb|KXJ06986.1|hypothetical protein AC249_AIPGENE18630 [Exaiptasia pallida] 1e-51; gi|999968657|gb|KXJ07831.1|hypothetical protein AC249_AIPGENE5272 [Exaiptasia pallida] 3e-49; gi|999975502|gb|KXJ14676.1|hypothetical protein AC249_AIPGENE20505 [Exaiptasia pallida] 5e-47;
More