#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.176520 R-6 0.998598623165 E-6 0.586504785133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176521 R-6 0.998598623165 E-6 0.586504785133 Q6NRH1 DDB1- and CUL4-associated factor 8 gi|156380939|ref|XP_001632024.1|predicted protein [Nematostella vectensis], 1e-93
other nr_hits gi|1069384716|ref|XP_018087441.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Xenopus laevis] 1e-60; gi|147900965|ref|NP_001084901.1|DDB1- and CUL4-associated factor 8 [Xenopus laevis] 1e-60; gi|1003986709|ref|XP_015739774.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Coturnix japonica] 4e-60; gi|1003986721|ref|XP_015739777.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Coturnix japonica] 4e-60; gi|971447364|ref|XP_015128646.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Gallus gallus] 4e-60; gi|971447366|ref|XP_015128647.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Gallus gallus] 4e-60; gi|768403554|ref|XP_011597806.1|PREDICTED: DDB1- and CUL4-associated factor 8 [Aquila chrysaetos canadensis] 4e-60; gi|729738055|ref|XP_010565178.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Haliaeetus leucocephalus] 4e-60; gi|729738057|ref|XP_010565179.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Haliaeetus leucocephalus] 4e-60;
NvERTx.4.176524 R-6 0.998598623165 E-6 0.586504785133 Q6NRH1 DDB1- and CUL4-associated factor 8 gi|156380939|ref|XP_001632024.1|predicted protein [Nematostella vectensis], 4e-81
other nr_hits gi|1069384716|ref|XP_018087441.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Xenopus laevis] 8e-57; gi|147900965|ref|NP_001084901.1|DDB1- and CUL4-associated factor 8 [Xenopus laevis] 8e-57; gi|1011603769|gb|KYO41067.1|DDB1- and CUL4-associated factor 8 [Alligator mississippiensis] 2e-56; gi|564244788|ref|XP_006261524.1|PREDICTED: DDB1- and CUL4-associated factor 8 [Alligator mississippiensis] 2e-56; gi|557330630|ref|XP_006038186.1|PREDICTED: DDB1- and CUL4-associated factor 8 [Alligator sinensis] 2e-56; gi|1003986709|ref|XP_015739774.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Coturnix japonica] 3e-56; gi|1003986721|ref|XP_015739777.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Coturnix japonica] 3e-56; gi|971447364|ref|XP_015128646.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Gallus gallus] 3e-56; gi|971447366|ref|XP_015128647.1|PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Gallus gallus] 3e-56;
NvERTx.4.176525 R-6 0.998598623165 E-6 0.586504785133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176531 R-6 0.998598623165 E-6 0.586504785133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.45360 R-5 0.992079191114 E-6 0.586317083875 Q99NA2 Protein atonal homolog 8 {ECO:0000312|MGI:MGI:1918343} gi|1066876916|gb|AOP31959.1|atonal-like protein [Nematostella vectensis], 9e-57
other nr_hits gi|156370139|ref|XP_001628329.1|predicted protein [Nematostella vectensis] 3e-41; gi|1005476956|ref|XP_015775242.1|PREDICTED: protein atonal homolog 8-like [Acropora digitifera] 1e-33; gi|999977336|gb|KXJ16510.1|Protein atonal-like 8 [Exaiptasia pallida] 2e-29; gi|291234454|ref|XP_002737163.1|PREDICTED: neurogenic differentiation factor 1-like [Saccoglossus kowalevskii] 2e-24; gi|1007704620|ref|XP_015819775.1|PREDICTED: protein atonal homolog 8 isoform X1 [Nothobranchius furzeri] 2e-23; gi|1007704622|ref|XP_015819862.1|PREDICTED: protein atonal homolog 8 isoform X2 [Nothobranchius furzeri] 2e-23; gi|443705648|gb|ELU02081.1|hypothetical protein CAPTEDRAFT_157958 [Capitella teleta] 3e-23; gi|1126175419|ref|XP_019619932.1|PREDICTED: protein atonal homolog 8-like isoform X2 [Branchiostoma belcheri] 4e-23; gi|1126175417|ref|XP_019619931.1|PREDICTED: protein atonal homolog 8-like isoform X1 [Branchiostoma belcheri] 4e-23;
NvERTx.4.45361 R-5 0.992079191114 E-6 0.586317083875 D2CLZ9 Protein atonal homolog 8 {ECO:0000312|ZFIN:ZDB-GENE-061215-7} gi|1066876916|gb|AOP31959.1|atonal-like protein [Nematostella vectensis], 1e-56
other nr_hits gi|156370139|ref|XP_001628329.1|predicted protein [Nematostella vectensis] 4e-41; gi|1005476956|ref|XP_015775242.1|PREDICTED: protein atonal homolog 8-like [Acropora digitifera] 2e-33; gi|999977336|gb|KXJ16510.1|Protein atonal-like 8 [Exaiptasia pallida] 2e-29; gi|291234454|ref|XP_002737163.1|PREDICTED: neurogenic differentiation factor 1-like [Saccoglossus kowalevskii] 2e-24; gi|675370989|gb|KFM63891.1|Protein atonal-like protein, partial [Stegodyphus mimosarum] 2e-23; gi|1007704620|ref|XP_015819775.1|PREDICTED: protein atonal homolog 8 isoform X1 [Nothobranchius furzeri] 3e-23; gi|1007704622|ref|XP_015819862.1|PREDICTED: protein atonal homolog 8 isoform X2 [Nothobranchius furzeri] 3e-23; gi|557001196|ref|XP_006003191.1|PREDICTED: protein atonal homolog 8 isoform X1 [Latimeria chalumnae] 3e-23; gi|555976958|ref|XP_005900437.1|PREDICTED: protein atonal homolog 8, partial [Bos mutus] 3e-23;
NvERTx.4.39493 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.39494 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.39495 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.39496 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91157 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91162 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91167 R-9 0.62641436915 E-6 0.585436890891 Q9M9E8 F-box protein At1g78280 gi|156404522|ref|XP_001640456.1|predicted protein [Nematostella vectensis], 1e-244
other nr_hits gi|260794256|ref|XP_002592125.1|hypothetical protein BRAFLDRAFT_84996 [Branchiostoma floridae] 7e-103; gi|762138619|ref|XP_011452640.1|PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase psr-1 [Crassostrea gigas] 2e-90; gi|999975769|gb|KXJ14943.1|Lysine-specific demethylase 8 [Exaiptasia pallida] 3e-90; gi|405977175|gb|EKC41638.1|Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-B [Crassostrea gigas] 3e-85; gi|871255387|ref|XP_012942096.1|PREDICTED: uncharacterized protein LOC101859122 isoform X3 [Aplysia californica] 1e-84; gi|524898654|ref|XP_005105773.1|PREDICTED: uncharacterized protein LOC101859122 isoform X1 [Aplysia californica] 1e-84; gi|524898656|ref|XP_005105774.1|PREDICTED: uncharacterized protein LOC101859122 isoform X2 [Aplysia californica] 1e-84; gi|908434793|ref|XP_013077104.1|PREDICTED: uncharacterized protein LOC106063319 isoform X1 [Biomphalaria glabrata] 2e-84; gi|196000068|ref|XP_002109902.1|hypothetical protein TRIADDRAFT_53278 [Trichoplax adhaerens] 8e-83;
NvERTx.4.91169 R-9 0.62641436915 E-6 0.585436890891 Q9M9E8 F-box protein At1g78280 gi|156404522|ref|XP_001640456.1|predicted protein [Nematostella vectensis], 3e-239
other nr_hits gi|260794256|ref|XP_002592125.1|hypothetical protein BRAFLDRAFT_84996 [Branchiostoma floridae] 2e-92; gi|999975769|gb|KXJ14943.1|Lysine-specific demethylase 8 [Exaiptasia pallida] 2e-90; gi|762138619|ref|XP_011452640.1|PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase psr-1 [Crassostrea gigas] 6e-82; gi|196000068|ref|XP_002109902.1|hypothetical protein TRIADDRAFT_53278 [Trichoplax adhaerens] 2e-80; gi|908434793|ref|XP_013077104.1|PREDICTED: uncharacterized protein LOC106063319 isoform X1 [Biomphalaria glabrata] 1e-77; gi|908434797|ref|XP_013077105.1|PREDICTED: lysine-specific demethylase 8-like isoform X2 [Biomphalaria glabrata] 1e-77; gi|908434801|ref|XP_013077106.1|PREDICTED: F-box protein At1g78280-like isoform X3 [Biomphalaria glabrata] 1e-77; gi|405977175|gb|EKC41638.1|Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-B [Crassostrea gigas] 7e-77; gi|871255387|ref|XP_012942096.1|PREDICTED: uncharacterized protein LOC101859122 isoform X3 [Aplysia californica] 1e-73;
NvERTx.4.126436 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126437 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126440 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133531 R-9 0.62641436915 E-6 0.585436890891 A2A891 Calmodulin-binding transcription activator 1 {ECO:0000312|EMBL:CAM24783.1} gi|999982119|gb|KXJ21269.1|Calmodulin-binding transcription activator 1 [Exaiptasia pallida], 5e-37
other nr_hits gi|831310909|ref|XP_012687881.1|PREDICTED: calmodulin-binding transcription activator 2 [Clupea harengus] 1e-26; gi|974115300|ref|XP_015257051.1|PREDICTED: calmodulin-binding transcription activator 2 [Cyprinodon variegatus] 2e-26; gi|880932879|ref|XP_012975423.1|PREDICTED: calmodulin-binding transcription activator 1 [Mesocricetus auratus] 2e-26; gi|1024957966|ref|XP_016299934.1|PREDICTED: calmodulin-binding transcription activator 1-like isoform X4 [Sinocyclocheilus anshuiensis] 4e-26; gi|982948266|ref|XP_015330656.1|PREDICTED: calmodulin-binding transcription activator 1 isoform X1 [Bos taurus] 4e-26; gi|982948269|ref|XP_015330657.1|PREDICTED: calmodulin-binding transcription activator 1 isoform X2 [Bos taurus] 4e-26; gi|1139821623|ref|XP_019927237.1|PREDICTED: calmodulin-binding transcription activator 2-like isoform X3 [Crassostrea gigas] 5e-26; gi|1139821620|ref|XP_019927236.1|PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 [Crassostrea gigas] 5e-26; gi|1139821626|ref|XP_019927239.1|PREDICTED: calmodulin-binding transcription activator 2-like isoform X5 [Crassostrea gigas] 5e-26;
NvERTx.4.134064 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189617 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189618 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189620 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189622 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189625 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189626 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.226171 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.226525 R-9 0.62641436915 E-6 0.585436890891 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.83963 R-2 0.405807235229 E-6 0.584959267743 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.83965 R-2 0.405807235229 E-6 0.584959267743 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.109710 R-2 0.405807235229 E-6 0.584959267743 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.132373 R-2 0.405807235229 E-6 0.584959267743 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.7548 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.16477 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.16478 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.17872 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.38040 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.55842 R-3 0.862447549235 E-6 0.582831817344 A0A0L0SGU3_ALLMA Uncharacterized protein {ECO:0000313|EMBL:KNE61733.1} gi|156340154|ref|XP_001620369.1|hypothetical protein NEMVEDRAFT_v1g43851 [Nematostella vectensis], 4e-14
other nr_hits gi|156368711|ref|XP_001627836.1|predicted protein [Nematostella vectensis] 6e-14; gi|999974388|gb|KXJ13562.1|Cyclic nucleotide-gated cation channel [Exaiptasia pallida] 1e-08; gi|156368703|ref|XP_001627832.1|predicted protein [Nematostella vectensis] 5e-08; gi|1005431808|ref|XP_015753566.1|PREDICTED: uncharacterized protein LOC107333293 [Acropora digitifera] 1e-06; gi|909135689|gb|KNE61733.1|hypothetical protein AMAG_06535 [Allomyces macrogynus ATCC 38327] 6e-06; gi|909147495|gb|KNE70665.1|hypothetical protein AMAG_15421 [Allomyces macrogynus ATCC 38327] 6e-06; gi|919057499|ref|XP_013410596.1|PREDICTED: uncharacterized protein LOC106173852 [Lingula anatina] 7e-06; gi|909138289|gb|KNE63751.1|hypothetical protein AMAG_08834 [Allomyces macrogynus ATCC 38327] 1e-05; gi|909149398|gb|KNE71946.1|hypothetical protein AMAG_16369 [Allomyces macrogynus ATCC 38327] 1e-05;
NvERTx.4.77014 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193523 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193524 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193525 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193527 R-3 0.862447549235 E-6 0.582831817344 Q9Y3Q4 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 gi|156368711|ref|XP_001627836.1|predicted protein [Nematostella vectensis], 1e-117
other nr_hits gi|156368703|ref|XP_001627832.1|predicted protein [Nematostella vectensis] 4e-70; gi|1005431808|ref|XP_015753566.1|PREDICTED: uncharacterized protein LOC107333293 [Acropora digitifera] 2e-56; gi|585682726|ref|XP_002731383.2|PREDICTED: uncharacterized protein LOC100370297, partial [Saccoglossus kowalevskii] 2e-38; gi|126506318|ref|NP_001075433.1|tetrameric potassium-selective cyclic nucleotide gated channel [Strongylocentrotus purpuratus] 3e-36; gi|999974388|gb|KXJ13562.1|Cyclic nucleotide-gated cation channel [Exaiptasia pallida] 1e-26; gi|1126197032|ref|XP_019631686.1|PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC109475496 [Branchiostoma belcheri] 3e-25; gi|260805839|ref|XP_002597793.1|hypothetical protein BRAFLDRAFT_100549 [Branchiostoma floridae] 1e-24; gi|919057499|ref|XP_013410596.1|PREDICTED: uncharacterized protein LOC106173852 [Lingula anatina] 6e-24; gi|260826640|ref|XP_002608273.1|hypothetical protein BRAFLDRAFT_125083 [Branchiostoma floridae] 6e-24;
NvERTx.4.193529 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description gi|156368711|ref|XP_001627836.1|predicted protein [Nematostella vectensis], 5e-30
other nr_hits gi|156368703|ref|XP_001627832.1|predicted protein [Nematostella vectensis] 1e-20; gi|999974388|gb|KXJ13562.1|Cyclic nucleotide-gated cation channel [Exaiptasia pallida] 1e-14; gi|1005431808|ref|XP_015753566.1|PREDICTED: uncharacterized protein LOC107333293 [Acropora digitifera] 7e-07;
NvERTx.4.193528 R-3 0.862447549235 E-6 0.582831817344 Q14028 Cyclic nucleotide-gated cation channel beta-1 gi|156368711|ref|XP_001627836.1|predicted protein [Nematostella vectensis], 5e-98
other nr_hits gi|156368703|ref|XP_001627832.1|predicted protein [Nematostella vectensis] 2e-64; gi|1005431808|ref|XP_015753566.1|PREDICTED: uncharacterized protein LOC107333293 [Acropora digitifera] 4e-57; gi|585682726|ref|XP_002731383.2|PREDICTED: uncharacterized protein LOC100370297, partial [Saccoglossus kowalevskii] 2e-44; gi|1126197032|ref|XP_019631686.1|PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC109475496 [Branchiostoma belcheri] 4e-34; gi|957853128|ref|XP_014676535.1|PREDICTED: uncharacterized protein LOC106816428 [Priapulus caudatus] 5e-32; gi|260805839|ref|XP_002597793.1|hypothetical protein BRAFLDRAFT_100549 [Branchiostoma floridae] 4e-30; gi|260826640|ref|XP_002608273.1|hypothetical protein BRAFLDRAFT_125083 [Branchiostoma floridae] 2e-26; gi|260794866|ref|XP_002592428.1|hypothetical protein BRAFLDRAFT_67294 [Branchiostoma floridae] 8e-25; gi|126506318|ref|NP_001075433.1|tetrameric potassium-selective cyclic nucleotide gated channel [Strongylocentrotus purpuratus] 1e-24;
NvERTx.4.193530 R-3 0.862447549235 E-6 0.582831817344 Q16281 Cyclic nucleotide-gated cation channel alpha-3 gi|156340154|ref|XP_001620369.1|hypothetical protein NEMVEDRAFT_v1g43851 [Nematostella vectensis], 4e-74
other nr_hits gi|156368703|ref|XP_001627832.1|predicted protein [Nematostella vectensis] 1e-63; gi|156368711|ref|XP_001627836.1|predicted protein [Nematostella vectensis] 2e-57; gi|1005431808|ref|XP_015753566.1|PREDICTED: uncharacterized protein LOC107333293 [Acropora digitifera] 3e-57; gi|585682726|ref|XP_002731383.2|PREDICTED: uncharacterized protein LOC100370297, partial [Saccoglossus kowalevskii] 2e-52; gi|919057499|ref|XP_013410596.1|PREDICTED: uncharacterized protein LOC106173852 [Lingula anatina] 3e-52; gi|919009811|ref|XP_013389400.1|PREDICTED: uncharacterized protein LOC106158087, partial [Lingula anatina] 3e-51; gi|126506318|ref|NP_001075433.1|tetrameric potassium-selective cyclic nucleotide gated channel [Strongylocentrotus purpuratus] 7e-47; gi|957853128|ref|XP_014676535.1|PREDICTED: uncharacterized protein LOC106816428 [Priapulus caudatus] 2e-43; gi|909138289|gb|KNE63751.1|hypothetical protein AMAG_08834 [Allomyces macrogynus ATCC 38327] 4e-43;
NvERTx.4.193533 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description gi|156368711|ref|XP_001627836.1|predicted protein [Nematostella vectensis], 6e-20
other nr_hits gi|156368703|ref|XP_001627832.1|predicted protein [Nematostella vectensis] 9e-08;
NvERTx.4.193516 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193519 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description gi|156368711|ref|XP_001627836.1|predicted protein [Nematostella vectensis], 3e-28
other nr_hits NA
NvERTx.4.193520 R-3 0.862447549235 E-6 0.582831817344 No_Uniprotmatch No_Description None
other nr_hits NA
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