#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.127687 R-6 0.999987087878 E-6 0.992733975786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.129632 R-6 0.999987087878 E-6 0.992733975786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.129633 R-6 0.999987087878 E-6 0.992733975786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136637 R-6 0.999987087878 E-6 0.992733975786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149645 R-6 0.999987087878 E-6 0.992733975786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149646 R-6 0.999987087878 E-6 0.992733975786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149647 R-6 0.999987087878 E-6 0.992733975786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154018 R-6 0.999987087878 E-6 0.992733975786 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201322 NA NA E-6 0.992718539925 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201323 NA NA E-6 0.992718539925 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.222456 R-5 0.999699101966 E-6 0.992652481361 Q30D77 Collagen alpha-1(XXIV) chain gi|156405162|ref|XP_001640601.1|predicted protein [Nematostella vectensis], 2e-21
other nr_hits gi|942378811|gb|JAN71335.1|Collagen alpha-1(IV) chain [Daphnia magna] 1e-10; gi|1022760984|gb|KZS07034.1|putative Collagen alpha-1(XXV) chain [Daphnia magna] 1e-10; gi|942309043|gb|JAN36454.1|putative Collagen alpha-1(IV) chain [Daphnia magna] 4e-10; gi|927122650|ref|XP_013907194.1|PREDICTED: collagen alpha-1(XXV) chain [Thamnophis sirtalis] 5e-10; gi|930765134|ref|XP_014196722.1|PREDICTED: collagen alpha-1(I) chain-like isoform X2 [Haplochromis burtoni] 6e-10; gi|930765132|ref|XP_014196721.1|PREDICTED: collagen alpha-1(I) chain-like isoform X1 [Haplochromis burtoni] 6e-10; gi|584052228|ref|XP_006770770.1|PREDICTED: collagen alpha-1(IV) chain [Myotis davidii] 8e-10; gi|554586240|ref|XP_005884544.1|PREDICTED: collagen alpha-1(IV) chain [Myotis brandtii] 8e-10; gi|521037296|gb|EPQ19074.1|Collagen alpha-1(IV) chain, partial [Myotis brandtii] 8e-10;
NvERTx.4.124150 R-4 0.999626748439 E-6 0.992633578371 Q6PC14 60S ribosomal protein L23 gi|156394964|ref|XP_001636882.1|predicted protein [Nematostella vectensis], 1e-37
other nr_hits gi|260794408|ref|XP_002592201.1|hypothetical protein BRAFLDRAFT_123946 [Branchiostoma floridae] 6e-36; gi|1005481663|ref|XP_015777537.1|PREDICTED: 60S ribosomal protein L23 isoform X1 [Acropora digitifera] 2e-35; gi|642069736|embl|CDQ88886.1|unnamed protein product, partial [Oncorhynchus mykiss] 4e-35; gi|225703828|gb|ACO07760.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 4e-35; gi|225704556|gb|ACO08124.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 4e-35; gi|238231703|ref|NP_001154037.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 4e-35; gi|1062974469|ref|XP_005680785.2|PREDICTED: 60S ribosomal protein L23 [Capra hircus] 5e-35; gi|746816704|ref|NP_001290643.1|60S ribosomal protein L23 [Esox lucius] 5e-35; gi|638252093|ref|NP_001279708.1|ribosomal protein L23 [Callorhinchus milii] 1e-34;
NvERTx.4.124151 R-4 0.999626748439 E-6 0.992633578371 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124152 R-4 0.999626748439 E-6 0.992633578371 Q6PC14 60S ribosomal protein L23 gi|156394964|ref|XP_001636882.1|predicted protein [Nematostella vectensis], 1e-37
other nr_hits gi|260794408|ref|XP_002592201.1|hypothetical protein BRAFLDRAFT_123946 [Branchiostoma floridae] 6e-36; gi|1005481663|ref|XP_015777537.1|PREDICTED: 60S ribosomal protein L23 isoform X1 [Acropora digitifera] 2e-35; gi|642069736|embl|CDQ88886.1|unnamed protein product, partial [Oncorhynchus mykiss] 4e-35; gi|225703828|gb|ACO07760.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 4e-35; gi|225704556|gb|ACO08124.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 4e-35; gi|238231703|ref|NP_001154037.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 4e-35; gi|1062974469|ref|XP_005680785.2|PREDICTED: 60S ribosomal protein L23 [Capra hircus] 5e-35; gi|746816704|ref|NP_001290643.1|60S ribosomal protein L23 [Esox lucius] 5e-35; gi|638252093|ref|NP_001279708.1|ribosomal protein L23 [Callorhinchus milii] 1e-34;
NvERTx.4.124153 R-4 0.999626748439 E-6 0.992633578371 Q6PC14 60S ribosomal protein L23 gi|156394964|ref|XP_001636882.1|predicted protein [Nematostella vectensis], 1e-37
other nr_hits gi|260794408|ref|XP_002592201.1|hypothetical protein BRAFLDRAFT_123946 [Branchiostoma floridae] 6e-36; gi|1005481663|ref|XP_015777537.1|PREDICTED: 60S ribosomal protein L23 isoform X1 [Acropora digitifera] 2e-35; gi|642069736|embl|CDQ88886.1|unnamed protein product, partial [Oncorhynchus mykiss] 4e-35; gi|225703828|gb|ACO07760.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 4e-35; gi|225704556|gb|ACO08124.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 4e-35; gi|238231703|ref|NP_001154037.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 4e-35; gi|1062974469|ref|XP_005680785.2|PREDICTED: 60S ribosomal protein L23 [Capra hircus] 5e-35; gi|746816704|ref|NP_001290643.1|60S ribosomal protein L23 [Esox lucius] 5e-35; gi|638252093|ref|NP_001279708.1|ribosomal protein L23 [Callorhinchus milii] 1e-34;
NvERTx.4.124155 R-4 0.999626748439 E-6 0.992633578371 P0CT61 60S ribosomal protein L23-B gi|156394964|ref|XP_001636882.1|predicted protein [Nematostella vectensis], 5e-22
other nr_hits gi|260794408|ref|XP_002592201.1|hypothetical protein BRAFLDRAFT_123946 [Branchiostoma floridae] 7e-21; gi|340382358|ref|XP_003389687.1|PREDICTED: 60S ribosomal protein L23 [Amphimedon queenslandica] 2e-20; gi|225705444|gb|ACO08568.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 3e-20; gi|642069736|embl|CDQ88886.1|unnamed protein product, partial [Oncorhynchus mykiss] 5e-20; gi|225703828|gb|ACO07760.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 5e-20; gi|225704556|gb|ACO08124.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 5e-20; gi|238231703|ref|NP_001154037.1|60S ribosomal protein L23 [Oncorhynchus mykiss] 5e-20; gi|213514600|ref|NP_001134137.1|60S ribosomal protein L23 [Salmo salar] 5e-20; gi|746816704|ref|NP_001290643.1|60S ribosomal protein L23 [Esox lucius] 5e-20;
NvERTx.4.18741 R-2 0.997472665813 E-6 0.992582580803 P25123 Gamma-aminobutyric acid receptor subunit beta gi|156390302|ref|XP_001635210.1|predicted protein [Nematostella vectensis], 4e-17
other nr_hits gi|999974073|gb|KXJ13247.1|Gamma-aminobutyric acid receptor subunit beta [Exaiptasia pallida] 2e-13; gi|999987974|gb|KXJ27077.1|Gamma-aminobutyric acid receptor subunit rho-1 [Exaiptasia pallida] 1e-07; gi|999974091|gb|KXJ13265.1|Gamma-aminobutyric acid receptor alpha-like [Exaiptasia pallida] 6e-07; gi|999980944|gb|KXJ20118.1|Gamma-aminobutyric acid receptor subunit beta-3 [Exaiptasia pallida] 7e-07; gi|999974089|gb|KXJ13263.1|Gamma-aminobutyric acid receptor subunit beta-3 [Exaiptasia pallida] 7e-07; gi|1005450540|ref|XP_015762468.1|PREDICTED: gamma-aminobutyric acid receptor subunit beta-2-like [Acropora digitifera] 1e-06; gi|156390194|ref|XP_001635156.1|predicted protein [Nematostella vectensis] 2e-06; gi|1005450430|ref|XP_015762411.1|PREDICTED: glycine receptor subunit beta-like [Acropora digitifera] 4e-06; gi|1005431562|ref|XP_015753465.1|PREDICTED: gamma-aminobutyric acid receptor subunit beta-2-like [Acropora digitifera] 4e-06;
NvERTx.4.18742 R-2 0.997472665813 E-6 0.992582580803 O93430 Glycine receptor subunit alphaZ1 gi|156390302|ref|XP_001635210.1|predicted protein [Nematostella vectensis], 8e-155
other nr_hits gi|999987974|gb|KXJ27077.1|Gamma-aminobutyric acid receptor subunit rho-1 [Exaiptasia pallida] 2e-96; gi|999980923|gb|KXJ20097.1|Gamma-aminobutyric acid receptor subunit beta-2 [Exaiptasia pallida] 6e-96; gi|1005431562|ref|XP_015753465.1|PREDICTED: gamma-aminobutyric acid receptor subunit beta-2-like [Acropora digitifera] 1e-95; gi|999974089|gb|KXJ13263.1|Gamma-aminobutyric acid receptor subunit beta-3 [Exaiptasia pallida] 9e-93; gi|999980944|gb|KXJ20118.1|Gamma-aminobutyric acid receptor subunit beta-3 [Exaiptasia pallida] 3e-91; gi|1005431574|ref|XP_015753471.1|PREDICTED: gamma-aminobutyric acid receptor subunit beta-2-like [Acropora digitifera] 2e-88; gi|999976544|gb|KXJ15718.1|Glycine receptor subunit alpha-2 [Exaiptasia pallida] 2e-88; gi|156390194|ref|XP_001635156.1|predicted protein [Nematostella vectensis] 5e-88; gi|156390188|ref|XP_001635153.1|predicted protein [Nematostella vectensis] 6e-88;
NvERTx.4.92639 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92640 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92641 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.117730 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description gi|156394322|ref|XP_001636775.1|predicted protein [Nematostella vectensis], 1e-31
other nr_hits gi|1005461154|ref|XP_015767664.1|PREDICTED: uncharacterized protein LOC107346394 [Acropora digitifera] 2e-09; gi|999985233|gb|KXJ24374.1|hypothetical protein AC249_AIPGENE22707 [Exaiptasia pallida] 2e-06;
NvERTx.4.117731 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description gi|156394322|ref|XP_001636775.1|predicted protein [Nematostella vectensis], 1e-31
other nr_hits gi|1005461154|ref|XP_015767664.1|PREDICTED: uncharacterized protein LOC107346394 [Acropora digitifera] 2e-09; gi|999985233|gb|KXJ24374.1|hypothetical protein AC249_AIPGENE22707 [Exaiptasia pallida] 2e-06;
NvERTx.4.117732 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description gi|156394322|ref|XP_001636775.1|predicted protein [Nematostella vectensis], 1e-31
other nr_hits gi|1005461154|ref|XP_015767664.1|PREDICTED: uncharacterized protein LOC107346394 [Acropora digitifera] 2e-09; gi|999985233|gb|KXJ24374.1|hypothetical protein AC249_AIPGENE22707 [Exaiptasia pallida] 2e-06;
NvERTx.4.117733 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description gi|156394322|ref|XP_001636775.1|predicted protein [Nematostella vectensis], 1e-31
other nr_hits gi|1005461154|ref|XP_015767664.1|PREDICTED: uncharacterized protein LOC107346394 [Acropora digitifera] 2e-09; gi|999985233|gb|KXJ24374.1|hypothetical protein AC249_AIPGENE22707 [Exaiptasia pallida] 2e-06;
NvERTx.4.171717 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204713 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204714 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204715 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204716 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204717 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204718 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.206179 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.206182 R-5 0.795718781623 E-6 0.992465948983 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113130 R-7 0.923408074805 E-6 0.9924642551 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113133 R-7 0.923408074805 E-6 0.9924642551 No_Uniprotmatch No_Description gi|156345557|ref|XP_001621402.1|hypothetical protein NEMVEDRAFT_v1g248684 [Nematostella vectensis], 1e-31
other nr_hits gi|156356109|ref|XP_001623773.1|predicted protein [Nematostella vectensis] 2e-30;
NvERTx.4.225081 R-7 0.923408074805 E-6 0.9924642551 No_Uniprotmatch No_Description gi|156356109|ref|XP_001623773.1|predicted protein [Nematostella vectensis], 3e-36
other nr_hits gi|156345557|ref|XP_001621402.1|hypothetical protein NEMVEDRAFT_v1g248684 [Nematostella vectensis] 3e-36;
NvERTx.4.69968 R-1 0.926147599835 E-6 0.992441466125 No_Uniprotmatch No_Description gi|156354348|ref|XP_001623358.1|predicted protein [Nematostella vectensis], 3e-06
other nr_hits NA
NvERTx.4.69969 R-1 0.926147599835 E-6 0.992441466125 Q32LJ3 Uncharacterized protein CXorf65 homolog gi|999975863|gb|KXJ15037.1|Uncharacterized protein CXorf65-like [Exaiptasia pallida], 4e-35
other nr_hits gi|1005421079|ref|XP_015760052.1|PREDICTED: uncharacterized protein CXorf65 homolog [Acropora digitifera] 5e-32; gi|999985837|gb|KXJ24978.1|Uncharacterized protein CXorf65-like [Exaiptasia pallida] 6e-31; gi|156392323|ref|XP_001635998.1|predicted protein [Nematostella vectensis] 1e-29; gi|780135267|ref|XP_011679880.1|PREDICTED: uncharacterized protein CXorf65 homolog isoform X3 [Strongylocentrotus purpuratus] 1e-29; gi|390349371|ref|XP_003727204.1|PREDICTED: uncharacterized protein LOC100889490 isoform X2 [Strongylocentrotus purpuratus] 2e-29; gi|1126175598|ref|XP_019620031.1|PREDICTED: uncharacterized protein CXorf65 homolog [Branchiostoma belcheri] 7e-29; gi|999984878|gb|KXJ24019.1|Uncharacterized protein C22orf15 [Exaiptasia pallida] 9e-27; gi|1005424556|ref|XP_015776646.1|PREDICTED: uncharacterized protein CXorf65 homolog [Acropora digitifera] 6e-23; gi|1005424560|ref|XP_015776659.1|PREDICTED: uncharacterized protein CXorf65 homolog isoform X1 [Acropora digitifera] 6e-23;
NvERTx.4.69971 R-1 0.926147599835 E-6 0.992441466125 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.13247 R-4 0.999656501099 E-6 0.992416301287 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188278 R-4 0.999656501099 E-6 0.992416301287 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188284 R-4 0.999656501099 E-6 0.992416301287 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188287 R-4 0.999656501099 E-6 0.992416301287 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197133 R-4 0.999656501099 E-6 0.992416301287 A0A0B7BUP6_9EUPU Uncharacterized protein {ECO:0000313|EMBL:CEK96914.1} gi|942337935|gb|JAN50900.1|hypothetical protein, partial [Daphnia magna], 1e-07
other nr_hits gi|954506570|gb|KRZ35025.1|hypothetical protein T4B_5257 [Trichinella pseudospiralis] 9e-07; gi|954313677|gb|KRY01286.1|hypothetical protein T4E_7203 [Trichinella pseudospiralis] 3e-06;
NvERTx.4.197134 R-4 0.999656501099 E-6 0.992416301287 P19950 40S ribosomal protein S14 gi|1126211429|ref|XP_019639507.1|PREDICTED: 40S ribosomal protein S14 [Branchiostoma belcheri], 3e-12
other nr_hits gi|999972255|gb|KXJ11429.1|40S ribosomal protein S14 [Exaiptasia pallida] 3e-12; gi|156386752|ref|XP_001634075.1|predicted protein [Nematostella vectensis] 3e-12; gi|260802698|ref|XP_002596229.1|hypothetical protein BRAFLDRAFT_113666 [Branchiostoma floridae] 3e-12; gi|291224783|ref|XP_002732381.1|PREDICTED: 40S ribosomal protein S14-like [Saccoglossus kowalevskii] 6e-12; gi|730633|sp|RS14_PODCA|Q08699.1|RecName: Full=40S ribosomal protein S14 >CAA50506.1 40S ribosomal protein S14 [Podocoryna carnea] 8e-12; gi|752369267|gb|KIO27049.1|glycoside hydrolase family 17 protein [Tulasnella calospora MUT 4182] 8e-12; gi|457866991|embl|CCQ18606.1|40S ribosomal protein S14 [Sycon ciliatum] 8e-12; gi|47935073|gb|AAT39883.1|ribosomal protein S14 [Branchiostoma belcheri tsingtauense] 8e-12; gi|1150088897|ref|XP_020230109.1|40S ribosomal protein S14 [Cajanus cajan] 1e-11;
NvERTx.4.197135 R-4 0.999656501099 E-6 0.992416301287 P62264 40S ribosomal protein S14 gi|156386752|ref|XP_001634075.1|predicted protein [Nematostella vectensis], 2e-61
other nr_hits gi|999972255|gb|KXJ11429.1|40S ribosomal protein S14 [Exaiptasia pallida] 3e-60; gi|260802698|ref|XP_002596229.1|hypothetical protein BRAFLDRAFT_113666 [Branchiostoma floridae] 2e-56; gi|1126211429|ref|XP_019639507.1|PREDICTED: 40S ribosomal protein S14 [Branchiostoma belcheri] 7e-56; gi|331216261|ref|XP_003320810.1|40S ribosomal protein S14 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] 1e-55; gi|1034741701|gb|OAV95709.1|small subunit ribosomal protein S14e [Puccinia triticina 1-1 BBBD Race 1] 1e-55; gi|469664487|gb|AGH70198.1|40S ribosomal protein S14 [Placozoa sp. H4] 2e-55; gi|599379852|ref|XP_007408519.1|hypothetical protein MELLADRAFT_71507 [Melampsora larici-populina 98AG31] 2e-55; gi|47935073|gb|AAT39883.1|ribosomal protein S14 [Branchiostoma belcheri tsingtauense] 2e-55; gi|291224783|ref|XP_002732381.1|PREDICTED: 40S ribosomal protein S14-like [Saccoglossus kowalevskii] 2e-55;
NvERTx.4.197136 R-4 0.999656501099 E-6 0.992416301287 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197137 R-4 0.999656501099 E-6 0.992416301287 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76535 NA NA E-6 0.992351732648 No_Uniprotmatch No_Description None
other nr_hits NA
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