#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.41460 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.53270 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.58234 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.83719 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105569 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112505 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113364 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113365 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113366 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113367 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123964 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130550 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.138393 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.138395 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140152 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149770 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.149775 R-8 0.521504446527 E-6 0.9946477613 NA NA None
other nr_hits NA
NvERTx.4.149776 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.150426 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156569 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158973 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158975 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158966 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165901 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176058 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176059 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.183851 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.183854 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.187654 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199189 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199193 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200727 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200730 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200738 R-8 0.521504446527 E-6 0.9946477613 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.225188 R-2 0.765353526391 E-6 0.994645016019 No_Uniprotmatch No_Description gi|156373907|ref|XP_001629551.1|predicted protein [Nematostella vectensis], 2e-87
other nr_hits gi|999975952|gb|KXJ15126.1|hypothetical protein AC249_AIPGENE11392 [Exaiptasia pallida] 1e-27; gi|1005487438|ref|XP_015780310.1|PREDICTED: uncharacterized protein LOC107358203 [Acropora digitifera] 3e-15; gi|1005469096|ref|XP_015771460.1|PREDICTED: uncharacterized protein LOC107349787 isoform X2 [Acropora digitifera] 4e-07; gi|1005469094|ref|XP_015771459.1|PREDICTED: uncharacterized protein LOC107349787 isoform X1 [Acropora digitifera] 7e-07; gi|999987664|gb|KXJ26775.1|hypothetical protein AC249_AIPGENE26379 [Exaiptasia pallida] 2e-06; gi|999988025|gb|KXJ27128.1|hypothetical protein AC249_AIPGENE13735 [Exaiptasia pallida] 4e-06; gi|1005469103|ref|XP_015771463.1|PREDICTED: uncharacterized protein LOC107349788 [Acropora digitifera] 5e-06;
NvERTx.4.36876 R-1 0.952806919388 E-6 0.994641201225 No_Uniprotmatch No_Description gi|156367420|ref|XP_001627415.1|predicted protein [Nematostella vectensis], 5e-16
other nr_hits NA
NvERTx.4.57386 R-1 0.952806919388 E-6 0.994641201225 No_Uniprotmatch No_Description gi|156367420|ref|XP_001627415.1|predicted protein [Nematostella vectensis], 1e-26
other nr_hits NA
NvERTx.4.57388 R-1 0.952806919388 E-6 0.994641201225 No_Uniprotmatch No_Description gi|156367420|ref|XP_001627415.1|predicted protein [Nematostella vectensis], 4e-109
other nr_hits NA
NvERTx.4.57389 R-1 0.952806919388 E-6 0.994641201225 No_Uniprotmatch No_Description gi|156367420|ref|XP_001627415.1|predicted protein [Nematostella vectensis], 1e-131
other nr_hits NA
NvERTx.4.187667 R-4 0.999449679059 E-6 0.994612623732 Q8ISN9 40S ribosomal protein S25 gi|156368518|ref|XP_001627740.1|predicted protein [Nematostella vectensis], 1e-29
other nr_hits gi|999985807|gb|KXJ24948.1|40S ribosomal protein S25 [Exaiptasia pallida] 1e-28; gi|443690974|gb|ELT92959.1|hypothetical protein CAPTEDRAFT_176999 [Capitella teleta] 4e-25; gi|443704136|gb|ELU01333.1|hypothetical protein CAPTEDRAFT_165020, partial [Capitella teleta] 4e-25; gi|157690774|tpe|CAL69114.1|TPA: putative 40S ribosomal protein S25 isoform 1 [Spadella cephaloptera] 5e-25; gi|237862692|gb|ACR24971.1|ribosomal protein S25 [Lepidochitona cinerea] 7e-25; gi|585652765|ref|XP_006814981.1|PREDICTED: 40S ribosomal protein S25-like [Saccoglossus kowalevskii] 9e-25; gi|1133416842|ref|XP_019881324.1|PREDICTED: 40S ribosomal protein S25 [Aethina tumida] 1e-24; gi|50344516|embl|CAH04344.1|S25e ribosomal protein [Platystomos albinus] 1e-24; gi|478258029|gb|ENN78167.1|hypothetical protein YQE_05320, partial [Dendroctonus ponderosae] 1e-24;
NvERTx.4.187668 R-4 0.999449679059 E-6 0.994612623732 Q8ISN9 40S ribosomal protein S25 gi|156368518|ref|XP_001627740.1|predicted protein [Nematostella vectensis], 4e-35
other nr_hits gi|999985807|gb|KXJ24948.1|40S ribosomal protein S25 [Exaiptasia pallida] 3e-32; gi|159145694|gb|ABW90384.1|putative ribosomal protein S25, partial [Sipunculus nudus] 2e-29; gi|157690774|tpe|CAL69114.1|TPA: putative 40S ribosomal protein S25 isoform 1 [Spadella cephaloptera] 3e-29; gi|1101605677|ref|XP_018967205.1|PREDICTED: 40S ribosomal protein S25 [Cyprinus carpio] 8e-29; gi|1133416842|ref|XP_019881324.1|PREDICTED: 40S ribosomal protein S25 [Aethina tumida] 1e-28; gi|50344516|embl|CAH04344.1|S25e ribosomal protein [Platystomos albinus] 1e-28; gi|189239458|ref|XP_975170.2|PREDICTED: 40S ribosomal protein S25 [Tribolium castaneum] 1e-28; gi|478258029|gb|ENN78167.1|hypothetical protein YQE_05320, partial [Dendroctonus ponderosae] 1e-28; gi|1130223632|ref|XP_019758141.1|PREDICTED: 40S ribosomal protein S25 [Dendroctonus ponderosae] 1e-28;
NvERTx.4.187669 R-4 0.999449679059 E-6 0.994612623732 Q8ISN9 40S ribosomal protein S25 gi|156368518|ref|XP_001627740.1|predicted protein [Nematostella vectensis], 4e-35
other nr_hits gi|999985807|gb|KXJ24948.1|40S ribosomal protein S25 [Exaiptasia pallida] 3e-32; gi|159145694|gb|ABW90384.1|putative ribosomal protein S25, partial [Sipunculus nudus] 2e-29; gi|157690774|tpe|CAL69114.1|TPA: putative 40S ribosomal protein S25 isoform 1 [Spadella cephaloptera] 3e-29; gi|1101605677|ref|XP_018967205.1|PREDICTED: 40S ribosomal protein S25 [Cyprinus carpio] 8e-29; gi|1133416842|ref|XP_019881324.1|PREDICTED: 40S ribosomal protein S25 [Aethina tumida] 1e-28; gi|50344516|embl|CAH04344.1|S25e ribosomal protein [Platystomos albinus] 1e-28; gi|189239458|ref|XP_975170.2|PREDICTED: 40S ribosomal protein S25 [Tribolium castaneum] 1e-28; gi|478258029|gb|ENN78167.1|hypothetical protein YQE_05320, partial [Dendroctonus ponderosae] 1e-28; gi|1130223632|ref|XP_019758141.1|PREDICTED: 40S ribosomal protein S25 [Dendroctonus ponderosae] 1e-28;
NvERTx.4.187670 R-4 0.999449679059 E-6 0.994612623732 Q8ISN9 40S ribosomal protein S25 gi|156368518|ref|XP_001627740.1|predicted protein [Nematostella vectensis], 4e-35
other nr_hits gi|999985807|gb|KXJ24948.1|40S ribosomal protein S25 [Exaiptasia pallida] 3e-32; gi|159145694|gb|ABW90384.1|putative ribosomal protein S25, partial [Sipunculus nudus] 2e-29; gi|157690774|tpe|CAL69114.1|TPA: putative 40S ribosomal protein S25 isoform 1 [Spadella cephaloptera] 3e-29; gi|1101605677|ref|XP_018967205.1|PREDICTED: 40S ribosomal protein S25 [Cyprinus carpio] 8e-29; gi|1133416842|ref|XP_019881324.1|PREDICTED: 40S ribosomal protein S25 [Aethina tumida] 1e-28; gi|50344516|embl|CAH04344.1|S25e ribosomal protein [Platystomos albinus] 1e-28; gi|189239458|ref|XP_975170.2|PREDICTED: 40S ribosomal protein S25 [Tribolium castaneum] 1e-28; gi|478258029|gb|ENN78167.1|hypothetical protein YQE_05320, partial [Dendroctonus ponderosae] 1e-28; gi|1130223632|ref|XP_019758141.1|PREDICTED: 40S ribosomal protein S25 [Dendroctonus ponderosae] 1e-28;
NvERTx.4.233981 NA NA E-6 0.994573276463 C3YJ01_BRAFL Putative uncharacterized protein {ECO:0000313|EMBL:EEN59663.1} gi|156390576|ref|XP_001635346.1|predicted protein [Nematostella vectensis], 2e-39
other nr_hits gi|1005471951|ref|XP_015772838.1|PREDICTED: uncharacterized protein LOC107351088 [Acropora digitifera] 3e-28; gi|999981363|gb|KXJ20537.1|hypothetical protein AC249_AIPGENE7316 [Exaiptasia pallida] 1e-26; gi|999967381|gb|KXJ06555.1|hypothetical protein AC249_AIPGENE24382, partial [Exaiptasia pallida] 6e-26; gi|1005419478|ref|XP_015752841.1|PREDICTED: uncharacterized protein LOC107332618 [Acropora digitifera] 2e-14; gi|260817557|ref|XP_002603652.1|hypothetical protein BRAFLDRAFT_98594 [Branchiostoma floridae] 4e-14; gi|999967976|gb|KXJ07150.1|hypothetical protein AC249_AIPGENE20280 [Exaiptasia pallida] 6e-14; gi|999974011|gb|KXJ13185.1|hypothetical protein AC249_AIPGENE28189 [Exaiptasia pallida] 3e-13; gi|999970888|gb|KXJ10062.1|hypothetical protein AC249_AIPGENE26315 [Exaiptasia pallida] 9e-13; gi|999972872|gb|KXJ12046.1|hypothetical protein AC249_AIPGENE28765, partial [Exaiptasia pallida] 2e-12;
NvERTx.4.20156 NA NA E-6 0.994573276463 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.31478 NA NA E-6 0.994573276463 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.31479 NA NA E-6 0.994573276463 No_Uniprotmatch No_Description gi|156390576|ref|XP_001635346.1|predicted protein [Nematostella vectensis], 6e-28
other nr_hits gi|1005436538|ref|XP_015755749.1|PREDICTED: uncharacterized protein LOC107335270 [Acropora digitifera] 3e-05;
NvERTx.4.73312 NA NA E-6 0.994573276463 C3YFE1_BRAFL Putative uncharacterized protein {ECO:0000313|EMBL:EEN60904.1} gi|156390576|ref|XP_001635346.1|predicted protein [Nematostella vectensis], 2e-48
other nr_hits gi|999981363|gb|KXJ20537.1|hypothetical protein AC249_AIPGENE7316 [Exaiptasia pallida] 1e-30; gi|999967381|gb|KXJ06555.1|hypothetical protein AC249_AIPGENE24382, partial [Exaiptasia pallida] 1e-30; gi|999979121|gb|KXJ18295.1|MAP kinase-activated protein kinase 5 [Exaiptasia pallida] 3e-28; gi|1005471951|ref|XP_015772838.1|PREDICTED: uncharacterized protein LOC107351088 [Acropora digitifera] 1e-24; gi|260819138|ref|XP_002604894.1|hypothetical protein BRAFLDRAFT_77273 [Branchiostoma floridae] 3e-11; gi|260816964|ref|XP_002603357.1|hypothetical protein BRAFLDRAFT_80350 [Branchiostoma floridae] 1e-10; gi|260808991|ref|XP_002599290.1|hypothetical protein BRAFLDRAFT_64352 [Branchiostoma floridae] 2e-10; gi|999972394|gb|KXJ11568.1|putative nuclease HARBI1 [Exaiptasia pallida] 3e-10; gi|1005419478|ref|XP_015752841.1|PREDICTED: uncharacterized protein LOC107332618 [Acropora digitifera] 4e-10;
NvERTx.4.57069 R-6 0.769095755355 E-6 0.99456158784 P45963 Acetylcholine receptor subunit alpha-type acr-7 gi|999977501|gb|KXJ16675.1|Neuronal acetylcholine receptor subunit beta-3 [Exaiptasia pallida], 6e-06
other nr_hits gi|156369950|ref|XP_001628236.1|predicted protein [Nematostella vectensis] 2e-05;
NvERTx.4.57070 R-6 0.769095755355 E-6 0.99456158784 P02710 Acetylcholine receptor subunit alpha gi|999977511|gb|KXJ16685.1|Neuronal acetylcholine receptor subunit beta-3 [Exaiptasia pallida], 1e-12
other nr_hits gi|999977544|gb|KXJ16718.1|Neuronal acetylcholine receptor subunit alpha-7 [Exaiptasia pallida] 3e-08; gi|999987308|gb|KXJ26427.1|Neuronal acetylcholine receptor subunit alpha-5 [Exaiptasia pallida] 4e-08; gi|999973408|gb|KXJ12582.1|Neuronal acetylcholine receptor subunit alpha-3 [Exaiptasia pallida] 2e-07; gi|999973418|gb|KXJ12592.1|Neuronal acetylcholine receptor subunit alpha-5 [Exaiptasia pallida] 6e-07; gi|156402824|ref|XP_001639790.1|predicted protein [Nematostella vectensis] 8e-07; gi|156351258|ref|XP_001622431.1|predicted protein [Nematostella vectensis] 1e-06;
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