#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

Search by gene name


Search by NvERTx ID





Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.202006 R-6 0.999584933515 E-6 1.0 No_Uniprotmatch No_Description gi|156351396|ref|XP_001622492.1|predicted protein [Nematostella vectensis], 2e-154
other nr_hits gi|999972868|gb|KXJ12042.1|hypothetical protein AC249_AIPGENE28751, partial [Exaiptasia pallida] 9e-23; gi|999966216|gb|KXJ05392.1|hypothetical protein AC249_AIPGENE4639 [Exaiptasia pallida] 5e-20; gi|999970812|gb|KXJ09986.1|hypothetical protein AC249_AIPGENE11145 [Exaiptasia pallida] 7e-20; gi|999967831|gb|KXJ07005.1|hypothetical protein AC249_AIPGENE4977 [Exaiptasia pallida] 3e-17; gi|999972356|gb|KXJ11530.1|hypothetical protein AC249_AIPGENE22729 [Exaiptasia pallida] 6e-17; gi|999980585|gb|KXJ19759.1|hypothetical protein AC249_AIPGENE21516 [Exaiptasia pallida] 3e-13; gi|999973708|gb|KXJ12882.1|hypothetical protein AC249_AIPGENE11849 [Exaiptasia pallida] 4e-12; gi|999975079|gb|KXJ14253.1|hypothetical protein AC249_AIPGENE13344 [Exaiptasia pallida] 2e-08; gi|999985763|gb|KXJ24904.1|hypothetical protein AC249_AIPGENE13867 [Exaiptasia pallida] 2e-06;
NvERTx.4.202007 R-6 0.999584933515 E-6 1.0 No_Uniprotmatch No_Description gi|156351396|ref|XP_001622492.1|predicted protein [Nematostella vectensis], 1e-153
other nr_hits gi|999972868|gb|KXJ12042.1|hypothetical protein AC249_AIPGENE28751, partial [Exaiptasia pallida] 7e-23; gi|999966216|gb|KXJ05392.1|hypothetical protein AC249_AIPGENE4639 [Exaiptasia pallida] 7e-20; gi|999970812|gb|KXJ09986.1|hypothetical protein AC249_AIPGENE11145 [Exaiptasia pallida] 9e-20; gi|999967831|gb|KXJ07005.1|hypothetical protein AC249_AIPGENE4977 [Exaiptasia pallida] 3e-17; gi|999972356|gb|KXJ11530.1|hypothetical protein AC249_AIPGENE22729 [Exaiptasia pallida] 7e-17; gi|999980585|gb|KXJ19759.1|hypothetical protein AC249_AIPGENE21516 [Exaiptasia pallida] 3e-14; gi|999973708|gb|KXJ12882.1|hypothetical protein AC249_AIPGENE11849 [Exaiptasia pallida] 5e-12; gi|999975079|gb|KXJ14253.1|hypothetical protein AC249_AIPGENE13344 [Exaiptasia pallida] 2e-08; gi|999985763|gb|KXJ24904.1|hypothetical protein AC249_AIPGENE13867 [Exaiptasia pallida] 2e-06;
NvERTx.4.209742 R-2 0.999653550365 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.219331 R-2 0.999653550365 E-6 1.0 No_Uniprotmatch No_Description gi|156402646|ref|XP_001639701.1|predicted protein [Nematostella vectensis], 3e-32
other nr_hits gi|1005480101|ref|XP_015776782.1|PREDICTED: uncharacterized protein LOC107354799 [Acropora digitifera] 3e-07; gi|1005489111|ref|XP_015747262.1|PREDICTED: uncharacterized protein LOC107327026 [Acropora digitifera] 3e-07; gi|999983823|gb|KXJ22964.1|SH3 domain-containing protein C23A1.17 [Exaiptasia pallida] 3e-07;
NvERTx.4.219613 R-1 0.928931565024 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.224486 R-2 0.999653550365 E-6 1.0 A0A0C2MFY0_THEKT Alpha-N-acetylgalactosamine-specific lectin {ECO:0000313|EMBL:KII63279.1} gi|156402646|ref|XP_001639701.1|predicted protein [Nematostella vectensis], 1e-35
other nr_hits gi|999983823|gb|KXJ22964.1|SH3 domain-containing protein C23A1.17 [Exaiptasia pallida] 2e-23; gi|1005489111|ref|XP_015747262.1|PREDICTED: uncharacterized protein LOC107327026 [Acropora digitifera] 3e-12; gi|1005480101|ref|XP_015776782.1|PREDICTED: uncharacterized protein LOC107354799 [Acropora digitifera] 8e-12; gi|749713960|gb|KII63279.1|Alpha-N-acetylgalactosamine-specific lectin [Thelohanellus kitauei] 2e-05; gi|156380516|ref|XP_001631814.1|predicted protein [Nematostella vectensis] 3e-05;
NvERTx.4.231165 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.233758 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.18564 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.18565 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.24296 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.30693 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.34272 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.41858 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.41859 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.55206 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.60188 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.72254 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92197 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description gi|999972681|gb|KXJ11855.1|hypothetical protein AC249_AIPGENE26152 [Exaiptasia pallida], 9e-51
other nr_hits NA
NvERTx.4.92198 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description gi|999972681|gb|KXJ11855.1|hypothetical protein AC249_AIPGENE26152 [Exaiptasia pallida], 2e-55
other nr_hits NA
NvERTx.4.92199 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description gi|999972681|gb|KXJ11855.1|hypothetical protein AC249_AIPGENE26152 [Exaiptasia pallida], 2e-55
other nr_hits NA
NvERTx.4.92200 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description gi|999972681|gb|KXJ11855.1|hypothetical protein AC249_AIPGENE26152 [Exaiptasia pallida], 9e-51
other nr_hits NA
NvERTx.4.92201 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description gi|999972681|gb|KXJ11855.1|hypothetical protein AC249_AIPGENE26152 [Exaiptasia pallida], 2e-55
other nr_hits NA
NvERTx.4.101048 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140157 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140158 R-7 0.998848600684 E-6 1.0 Q04652 Ring canal kelch protein gi|156376888|ref|XP_001630590.1|predicted protein [Nematostella vectensis], 4e-151
other nr_hits gi|1005484688|ref|XP_015778962.1|PREDICTED: uncharacterized protein LOC107356853, partial [Acropora digitifera] 2e-24; gi|1005429475|ref|XP_015752472.1|PREDICTED: kelch-like protein 40 [Acropora digitifera] 1e-23; gi|1005484686|ref|XP_015778961.1|PREDICTED: uncharacterized protein LOC107356852 [Acropora digitifera] 5e-23; gi|1005429469|ref|XP_015752469.1|PREDICTED: uncharacterized protein LOC107332256 [Acropora digitifera] 5e-23; gi|1005484702|ref|XP_015778968.1|PREDICTED: uncharacterized protein LOC107356856 isoform X1 [Acropora digitifera] 1e-21; gi|1005484705|ref|XP_015778969.1|PREDICTED: uncharacterized protein LOC107356856 isoform X2 [Acropora digitifera] 1e-21; gi|1005429471|ref|XP_015752470.1|PREDICTED: uncharacterized protein LOC107332257 isoform X1 [Acropora digitifera] 1e-21; gi|1005429473|ref|XP_015752471.1|PREDICTED: uncharacterized protein LOC107332257 isoform X2 [Acropora digitifera] 1e-21; gi|1005484691|ref|XP_015778963.1|PREDICTED: uncharacterized protein LOC107356854 [Acropora digitifera] 7e-20;
NvERTx.4.140159 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description gi|156376888|ref|XP_001630590.1|predicted protein [Nematostella vectensis], 2e-66
other nr_hits NA
NvERTx.4.140161 R-7 0.998848600684 E-6 1.0 Q6JEL3 Kelch-like protein 10 gi|156376888|ref|XP_001630590.1|predicted protein [Nematostella vectensis], 1e-118
other nr_hits gi|1005484688|ref|XP_015778962.1|PREDICTED: uncharacterized protein LOC107356853, partial [Acropora digitifera] 2e-23; gi|1005484686|ref|XP_015778961.1|PREDICTED: uncharacterized protein LOC107356852 [Acropora digitifera] 9e-23; gi|1005484691|ref|XP_015778963.1|PREDICTED: uncharacterized protein LOC107356854 [Acropora digitifera] 7e-22; gi|1005429469|ref|XP_015752469.1|PREDICTED: uncharacterized protein LOC107332256 [Acropora digitifera] 7e-22; gi|1005429475|ref|XP_015752472.1|PREDICTED: kelch-like protein 40 [Acropora digitifera] 1e-21; gi|1005484702|ref|XP_015778968.1|PREDICTED: uncharacterized protein LOC107356856 isoform X1 [Acropora digitifera] 1e-21; gi|999981884|gb|KXJ21042.1|Tumor susceptibility gene 101 protein [Exaiptasia pallida] 1e-21; gi|1005484705|ref|XP_015778969.1|PREDICTED: uncharacterized protein LOC107356856 isoform X2 [Acropora digitifera] 2e-21; gi|1005484699|ref|XP_015778967.1|PREDICTED: uncharacterized protein LOC107356855 [Acropora digitifera] 5e-21;
NvERTx.4.146054 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189908 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197431 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197437 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199250 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.214138 R-7 0.998848600684 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.231353 R-2 0.99999121805 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.232541 R-2 0.99999121805 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.27101 R-3 0.43952972239 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.66913 R-2 0.99999121805 E-6 1.0 No_Uniprotmatch No_Description gi|156353959|ref|XP_001623173.1|predicted protein [Nematostella vectensis], 3e-13
other nr_hits gi|1005424508|ref|XP_015776461.1|PREDICTED: acidic repeat-containing protein-like isoform X2 [Acropora digitifera] 4e-06; gi|999971430|gb|KXJ10604.1|hypothetical protein AC249_AIPGENE26280 [Exaiptasia pallida] 4e-05;
NvERTx.4.66914 R-2 0.99999121805 E-6 1.0 No_Uniprotmatch No_Description gi|156353959|ref|XP_001623173.1|predicted protein [Nematostella vectensis], 6e-41
other nr_hits NA
NvERTx.4.66915 R-2 0.99999121805 E-6 1.0 No_Uniprotmatch No_Description gi|156353959|ref|XP_001623173.1|predicted protein [Nematostella vectensis], 4e-41
other nr_hits NA
NvERTx.4.66917 R-2 0.99999121805 E-6 1.0 No_Uniprotmatch No_Description gi|156353959|ref|XP_001623173.1|predicted protein [Nematostella vectensis], 1e-40
other nr_hits NA
NvERTx.4.66918 R-2 0.99999121805 E-6 1.0 No_Uniprotmatch No_Description gi|156353959|ref|XP_001623173.1|predicted protein [Nematostella vectensis], 2e-13
other nr_hits gi|1005424508|ref|XP_015776461.1|PREDICTED: acidic repeat-containing protein-like isoform X2 [Acropora digitifera] 9e-06; gi|999971430|gb|KXJ10604.1|hypothetical protein AC249_AIPGENE26280 [Exaiptasia pallida] 3e-05;
NvERTx.4.85029 R-2 0.950968018687 E-6 1.0 No_Uniprotmatch No_Description gi|999968283|gb|KXJ07457.1|Kinesin heavy chain isoform 5C [Exaiptasia pallida], 2e-59
other nr_hits gi|1005424256|ref|XP_015775233.1|PREDICTED: centrosome-associated protein CEP250-like isoform X1 [Acropora digitifera] 1e-40;
NvERTx.4.85030 R-2 0.950968018687 E-6 1.0 A0A1D3QBM3_BACCE LPXTG-domain-containing protein cell wall anchor domain {ECO:0000313|EMBL:SCN30276.1} gi|999968283|gb|KXJ07457.1|Kinesin heavy chain isoform 5C [Exaiptasia pallida], 1e-157
other nr_hits gi|1005424256|ref|XP_015775233.1|PREDICTED: centrosome-associated protein CEP250-like isoform X1 [Acropora digitifera] 7e-106; gi|1005424258|ref|XP_015775239.1|PREDICTED: centrosome-associated protein CEP250-like isoform X2 [Acropora digitifera] 3e-60; gi|1067598113|embl|SCN30276.1|LPXTG-domain-containing protein cell wall anchor domain [Bacillus cereus] 1e-06; gi|1040484506|ref|WP_065107683.1|internalin [Bacillus cereus] 6e-06; gi|999882211|gb|KXI47343.1|internalin [Bacillus cereus] 6e-06; gi|157127434|ref|XP_001654978.1|AAEL002230-PA, partial [Aedes aegypti] 6e-06; gi|961884316|ref|XP_014898708.1|PREDICTED: trichohyalin-like isoform X1 [Poecilia latipinna] 1e-05; gi|961884324|ref|XP_014898710.1|PREDICTED: trichohyalin-like isoform X2 [Poecilia latipinna] 1e-05; gi|961884327|ref|XP_014898711.1|PREDICTED: trichohyalin-like isoform X3 [Poecilia latipinna] 1e-05;
NvERTx.4.103419 R-7 0.900182301525 E-6 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103420 R-7 0.900182301525 E-6 1.0 Q9Y253 DNA polymerase eta gi|156387566|ref|XP_001634274.1|predicted protein [Nematostella vectensis], 6e-197
other nr_hits gi|1005420612|ref|XP_015758070.1|PREDICTED: DNA polymerase eta-like [Acropora digitifera] 1e-114; gi|999990797|gb|KXJ29817.1|DNA polymerase eta [Exaiptasia pallida] 3e-112; gi|676489096|ref|XP_009064826.1|hypothetical protein LOTGIDRAFT_222102 [Lottia gigantea] 7e-103; gi|524876976|ref|XP_005095196.1|PREDICTED: DNA polymerase eta-like [Aplysia californica] 7e-103; gi|640794969|ref|XP_008053521.1|PREDICTED: DNA polymerase eta, partial [Carlito syrichta] 4e-102; gi|260803774|ref|XP_002596764.1|hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae] 4e-101; gi|908418915|ref|XP_013070780.1|PREDICTED: DNA polymerase eta-like [Biomphalaria glabrata] 5e-101; gi|829807784|ref|XP_012628535.1|DNA polymerase eta isoform X1 [Microcebus murinus] 6e-101; gi|829807804|ref|XP_012628539.1|DNA polymerase eta isoform X5 [Microcebus murinus] 6e-101;
NvERTx.4.103429 R-7 0.900182301525 E-6 1.0 Q9Y253 DNA polymerase eta gi|156387566|ref|XP_001634274.1|predicted protein [Nematostella vectensis], 8e-159
other nr_hits gi|999990797|gb|KXJ29817.1|DNA polymerase eta [Exaiptasia pallida] 3e-121; gi|1005420612|ref|XP_015758070.1|PREDICTED: DNA polymerase eta-like [Acropora digitifera] 2e-114; gi|92098322|gb|AAI15308.1|Zgc:136881 [Danio rerio] 5e-91; gi|585195797|ref|XP_006749024.1|PREDICTED: DNA polymerase eta isoform X1 [Leptonychotes weddellii] 2e-90; gi|432904760|ref|XP_004077403.1|PREDICTED: DNA polymerase eta [Oryzias latipes] 3e-90; gi|921273973|ref|NP_001035337.2|DNA polymerase eta [Danio rerio] 4e-90; gi|829807784|ref|XP_012628535.1|DNA polymerase eta isoform X1 [Microcebus murinus] 6e-90; gi|507617426|ref|XP_004624172.1|PREDICTED: DNA polymerase eta isoform X1 [Octodon degus] 6e-90; gi|472377496|ref|XP_004408176.1|PREDICTED: DNA polymerase eta isoform X1 [Odobenus rosmarus divergens] 1e-89;
NvERTx.4.103430 R-7 0.900182301525 E-6 1.0 Q9Y253 DNA polymerase eta gi|156387566|ref|XP_001634274.1|predicted protein [Nematostella vectensis], 3e-159
other nr_hits gi|1005420612|ref|XP_015758070.1|PREDICTED: DNA polymerase eta-like [Acropora digitifera] 1e-85; gi|999990797|gb|KXJ29817.1|DNA polymerase eta [Exaiptasia pallida] 2e-80; gi|524876976|ref|XP_005095196.1|PREDICTED: DNA polymerase eta-like [Aplysia californica] 2e-75; gi|676489096|ref|XP_009064826.1|hypothetical protein LOTGIDRAFT_222102 [Lottia gigantea] 1e-73; gi|640794969|ref|XP_008053521.1|PREDICTED: DNA polymerase eta, partial [Carlito syrichta] 1e-73; gi|157817057|ref|NP_001101674.1|DNA polymerase eta [Rattus norvegicus] 5e-73; gi|966938975|ref|XP_014991918.1|PREDICTED: DNA polymerase eta isoform X1 [Macaca mulatta] 3e-72; gi|829807784|ref|XP_012628535.1|DNA polymerase eta isoform X1 [Microcebus murinus] 3e-72; gi|829807804|ref|XP_012628539.1|DNA polymerase eta isoform X5 [Microcebus murinus] 3e-72;
NvERTx.4.103431 R-7 0.900182301525 E-6 1.0 Q9Y253 DNA polymerase eta gi|156387566|ref|XP_001634274.1|predicted protein [Nematostella vectensis], 7e-197
other nr_hits gi|999990797|gb|KXJ29817.1|DNA polymerase eta [Exaiptasia pallida] 3e-127; gi|1005420612|ref|XP_015758070.1|PREDICTED: DNA polymerase eta-like [Acropora digitifera] 2e-124; gi|676489096|ref|XP_009064826.1|hypothetical protein LOTGIDRAFT_222102 [Lottia gigantea] 9e-110; gi|524876976|ref|XP_005095196.1|PREDICTED: DNA polymerase eta-like [Aplysia californica] 5e-108; gi|829807784|ref|XP_012628535.1|DNA polymerase eta isoform X1 [Microcebus murinus] 1e-105; gi|829807804|ref|XP_012628539.1|DNA polymerase eta isoform X5 [Microcebus murinus] 1e-105; gi|92098322|gb|AAI15308.1|Zgc:136881 [Danio rerio] 4e-105; gi|921273973|ref|NP_001035337.2|DNA polymerase eta [Danio rerio] 5e-105; gi|908418915|ref|XP_013070780.1|PREDICTED: DNA polymerase eta-like [Biomphalaria glabrata] 6e-105;
NvERTx.4.103432 R-7 0.900182301525 E-6 1.0 Q9Y253 DNA polymerase eta gi|999990797|gb|KXJ29817.1|DNA polymerase eta [Exaiptasia pallida], 6e-10
other nr_hits gi|1005420612|ref|XP_015758070.1|PREDICTED: DNA polymerase eta-like [Acropora digitifera] 4e-06;
More