#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.61874 R-7 0.999986096463 E-5 1.0 P57784 U2 small nuclear ribonucleoprotein A' gi|156395617|ref|XP_001637207.1|predicted protein [Nematostella vectensis], 1e-70
other nr_hits gi|1005436450|ref|XP_015755710.1|PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Acropora digitifera] 4e-38; gi|1139853563|ref|XP_011421422.2|PREDICTED: U2 small nuclear ribonucleoprotein A' [Crassostrea gigas] 7e-32; gi|919086412|ref|XP_013380350.1|PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Lingula anatina] 1e-30; gi|974106088|ref|XP_015252017.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Cyprinodon variegatus] 2e-29; gi|1035269370|ref|XP_016887857.1|PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Cynoglossus semilaevis] 4e-29; gi|1126198552|ref|XP_019632501.1|PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Branchiostoma belcheri] 5e-29; gi|1083343599|ref|XP_018620530.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Scleropages formosus] 5e-29; gi|260821402|ref|XP_002606022.1|hypothetical protein BRAFLDRAFT_115963 [Branchiostoma floridae] 7e-29; gi|972962534|ref|XP_006628826.2|PREDICTED: U2 small nuclear ribonucleoprotein A' [Lepisosteus oculatus] 9e-29;
NvERTx.4.61875 R-7 0.999986096463 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.61876 R-7 0.999986096463 E-5 1.0 P57784 U2 small nuclear ribonucleoprotein A' gi|156395617|ref|XP_001637207.1|predicted protein [Nematostella vectensis], 2e-115
other nr_hits gi|1005436450|ref|XP_015755710.1|PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Acropora digitifera] 1e-75; gi|1139853563|ref|XP_011421422.2|PREDICTED: U2 small nuclear ribonucleoprotein A' [Crassostrea gigas] 5e-66; gi|530606336|ref|XP_005294878.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Chrysemys picta bellii] 2e-64; gi|974106088|ref|XP_015252017.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Cyprinodon variegatus] 3e-64; gi|1083343599|ref|XP_018620530.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Scleropages formosus] 5e-64; gi|1079756788|ref|XP_018548227.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Lates calcarifer] 5e-64; gi|972962534|ref|XP_006628826.2|PREDICTED: U2 small nuclear ribonucleoprotein A' [Lepisosteus oculatus] 6e-64; gi|597797421|ref|XP_007260279.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Astyanax mexicanus] 6e-64; gi|1035269370|ref|XP_016887857.1|PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Cynoglossus semilaevis] 8e-64;
NvERTx.4.61877 R-7 0.999986096463 E-5 1.0 P57784 U2 small nuclear ribonucleoprotein A' gi|156395617|ref|XP_001637207.1|predicted protein [Nematostella vectensis], 1e-50
other nr_hits gi|1005436450|ref|XP_015755710.1|PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Acropora digitifera] 1e-37; gi|530606336|ref|XP_005294878.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Chrysemys picta bellii] 2e-36; gi|1072272879|ref|XP_018422268.1|PREDICTED: U2 small nuclear ribonucleoprotein A' isoform X1 [Nanorana parkeri] 4e-36; gi|1072272881|ref|XP_018422269.1|PREDICTED: U2 small nuclear ribonucleoprotein A' isoform X2 [Nanorana parkeri] 4e-36; gi|1009587376|ref|XP_015922968.1|PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Parasteatoda tepidariorum] 4e-36; gi|1083343599|ref|XP_018620530.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Scleropages formosus] 9e-36; gi|1022768162|gb|KZS12980.1|U2 small nuclear ribonucleoprotein A' [Daphnia magna] 9e-36; gi|556958692|ref|XP_005990198.1|PREDICTED: U2 small nuclear ribonucleoprotein A' [Latimeria chalumnae] 1e-35; gi|1139853563|ref|XP_011421422.2|PREDICTED: U2 small nuclear ribonucleoprotein A' [Crassostrea gigas] 1e-35;
NvERTx.4.130489 R-8 0.926097592631 E-5 1.0 Q9D2J7 Ankyrin repeat and EF-hand domain-containing protein 1 gi|1005437660|ref|XP_015756266.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like [Acropora digitifera], 7e-32
other nr_hits gi|1005492369|ref|XP_015748856.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like [Acropora digitifera] 7e-32; gi|999972853|gb|KXJ12027.1|Ankyrin repeat and EF-hand domain-containing protein 1 [Exaiptasia pallida] 5e-28; gi|919046414|ref|XP_013406382.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like isoform X1 [Lingula anatina] 2e-21; gi|919046416|ref|XP_013406383.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like isoform X2 [Lingula anatina] 2e-21; gi|762078166|ref|XP_011452550.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 isoform X2 [Crassostrea gigas] 1e-20; gi|762078168|ref|XP_011452558.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 isoform X3 [Crassostrea gigas] 1e-20; gi|762078164|ref|XP_011452540.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 isoform X1 [Crassostrea gigas] 1e-20; gi|291236410|ref|XP_002738132.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like, partial [Saccoglossus kowalevskii] 3e-20; gi|443728790|gb|ELU14970.1|hypothetical protein CAPTEDRAFT_153089 [Capitella teleta] 6e-20;
NvERTx.4.130491 R-8 0.926097592631 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130492 R-8 0.926097592631 E-5 1.0 Q9D2J7 Ankyrin repeat and EF-hand domain-containing protein 1 gi|999972853|gb|KXJ12027.1|Ankyrin repeat and EF-hand domain-containing protein 1 [Exaiptasia pallida], 2e-285
other nr_hits gi|1005437660|ref|XP_015756266.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like [Acropora digitifera] 2e-210; gi|762078166|ref|XP_011452550.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 isoform X2 [Crassostrea gigas] 2e-185; gi|762078168|ref|XP_011452558.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 isoform X3 [Crassostrea gigas] 2e-185; gi|762078164|ref|XP_011452540.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 isoform X1 [Crassostrea gigas] 2e-185; gi|919046414|ref|XP_013406382.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like isoform X1 [Lingula anatina] 4e-181; gi|919046416|ref|XP_013406383.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like isoform X2 [Lingula anatina] 4e-181; gi|115754769|ref|XP_784222.2|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 [Strongylocentrotus purpuratus] 1e-180; gi|573874982|ref|XP_006625836.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 [Lepisosteus oculatus] 2e-170; gi|443728790|gb|ELU14970.1|hypothetical protein CAPTEDRAFT_153089 [Capitella teleta] 1e-165;
NvERTx.4.130493 R-8 0.926097592631 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130495 R-8 0.926097592631 E-5 1.0 Q9NU02 Ankyrin repeat and EF-hand domain-containing protein 1 gi|999972853|gb|KXJ12027.1|Ankyrin repeat and EF-hand domain-containing protein 1 [Exaiptasia pallida], 1e-159
other nr_hits gi|1005437660|ref|XP_015756266.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like [Acropora digitifera] 8e-152; gi|919046414|ref|XP_013406382.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like isoform X1 [Lingula anatina] 8e-104; gi|762078164|ref|XP_011452540.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 isoform X1 [Crassostrea gigas] 5e-103; gi|524872680|ref|XP_005093099.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like [Aplysia californica] 3e-98; gi|291236410|ref|XP_002738132.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like, partial [Saccoglossus kowalevskii] 2e-95; gi|908458836|ref|XP_013084705.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like [Biomphalaria glabrata] 1e-93; gi|1126188871|ref|XP_019627274.1|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1-like [Branchiostoma belcheri] 1e-92; gi|443728790|gb|ELU14970.1|hypothetical protein CAPTEDRAFT_153089 [Capitella teleta] 2e-90; gi|115754769|ref|XP_784222.2|PREDICTED: ankyrin repeat and EF-hand domain-containing protein 1 [Strongylocentrotus purpuratus] 2e-88;
NvERTx.4.153748 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153774 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153753 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153754 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description gi|156368841|ref|XP_001627900.1|predicted protein [Nematostella vectensis], 6e-10
other nr_hits NA
NvERTx.4.153755 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153762 R-1 0.998025172152 E-5 1.0 Q5ZLM0 Parafibromin gi|156368841|ref|XP_001627900.1|predicted protein [Nematostella vectensis], 3e-277
other nr_hits gi|617409432|ref|XP_007554941.1|PREDICTED: parafibromin [Poecilia formosa] 7e-171; gi|657522757|ref|XP_008285711.1|PREDICTED: parafibromin [Stegastes partitus] 9e-171; gi|961856227|ref|XP_014844315.1|PREDICTED: parafibromin [Poecilia mexicana] 2e-170; gi|742090890|ref|XP_010893502.1|PREDICTED: parafibromin isoform X1 [Esox lucius] 2e-170; gi|742090894|ref|XP_010893511.1|PREDICTED: parafibromin isoform X2 [Esox lucius] 2e-170; gi|602628223|ref|XP_007421049.1|PREDICTED: parafibromin [Python bivittatus] 2e-170; gi|658897259|ref|XP_008431476.1|PREDICTED: parafibromin [Poecilia reticulata] 3e-170; gi|551501803|ref|XP_005802447.1|PREDICTED: parafibromin [Xiphophorus maculatus] 3e-170; gi|126306381|ref|XP_001367517.1|PREDICTED: parafibromin [Monodelphis domestica] 3e-170;
NvERTx.4.153771 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153763 R-1 0.998025172152 E-5 1.0 Q5ZLM0 Parafibromin gi|156368841|ref|XP_001627900.1|predicted protein [Nematostella vectensis], 1e-149
other nr_hits gi|1005477698|ref|XP_015775616.1|PREDICTED: parafibromin-like [Acropora digitifera] 2e-111; gi|742090890|ref|XP_010893502.1|PREDICTED: parafibromin isoform X1 [Esox lucius] 5e-85; gi|742090894|ref|XP_010893511.1|PREDICTED: parafibromin isoform X2 [Esox lucius] 5e-85; gi|126306381|ref|XP_001367517.1|PREDICTED: parafibromin [Monodelphis domestica] 8e-85; gi|1007786804|ref|XP_015830058.1|PREDICTED: parafibromin [Nothobranchius furzeri] 1e-84; gi|929071305|ref|XP_014045058.1|PREDICTED: parafibromin [Salmo salar] 1e-84; gi|642094337|embl|CDQ80273.1|unnamed protein product [Oncorhynchus mykiss] 1e-84; gi|1002590811|ref|XP_015674118.1|PREDICTED: parafibromin [Protobothrops mucrosquamatus] 2e-84; gi|998706916|ref|XP_015491185.1|PREDICTED: parafibromin isoform X2 [Parus major] 2e-84;
NvERTx.4.153765 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153766 R-1 0.998025172152 E-5 1.0 Q8JZM7 Parafibromin gi|156368841|ref|XP_001627900.1|predicted protein [Nematostella vectensis], 1e-205
other nr_hits gi|617409432|ref|XP_007554941.1|PREDICTED: parafibromin [Poecilia formosa] 4e-126; gi|657522757|ref|XP_008285711.1|PREDICTED: parafibromin [Stegastes partitus] 5e-126; gi|961856227|ref|XP_014844315.1|PREDICTED: parafibromin [Poecilia mexicana] 8e-126; gi|658897259|ref|XP_008431476.1|PREDICTED: parafibromin [Poecilia reticulata] 1e-125; gi|551501803|ref|XP_005802447.1|PREDICTED: parafibromin [Xiphophorus maculatus] 2e-125; gi|1079727557|ref|XP_018532780.1|PREDICTED: parafibromin [Lates calcarifer] 3e-125; gi|929071305|ref|XP_014045058.1|PREDICTED: parafibromin [Salmo salar] 3e-125; gi|821480030|ref|XP_012403201.1|PREDICTED: parafibromin [Sarcophilus harrisii] 4e-125; gi|126306381|ref|XP_001367517.1|PREDICTED: parafibromin [Monodelphis domestica] 4e-125;
NvERTx.4.153767 R-1 0.998025172152 E-5 1.0 Q5ZLM0 Parafibromin gi|156368841|ref|XP_001627900.1|predicted protein [Nematostella vectensis], 8e-96
other nr_hits gi|1005477698|ref|XP_015775616.1|PREDICTED: parafibromin-like [Acropora digitifera] 2e-75; gi|742090890|ref|XP_010893502.1|PREDICTED: parafibromin isoform X1 [Esox lucius] 2e-53; gi|742090894|ref|XP_010893511.1|PREDICTED: parafibromin isoform X2 [Esox lucius] 2e-53; gi|1007786804|ref|XP_015830058.1|PREDICTED: parafibromin [Nothobranchius furzeri] 4e-53; gi|1117254075|ref|XP_019357569.1|PREDICTED: parafibromin [Gavialis gangeticus] 5e-53; gi|1002590811|ref|XP_015674118.1|PREDICTED: parafibromin [Protobothrops mucrosquamatus] 5e-53; gi|998706916|ref|XP_015491185.1|PREDICTED: parafibromin isoform X2 [Parus major] 5e-53; gi|975131798|ref|XP_015281916.1|PREDICTED: parafibromin [Gekko japonicus] 5e-53; gi|71895241|ref|NP_001026436.1|parafibromin [Gallus gallus] 5e-53;
NvERTx.4.153768 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153769 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153770 R-1 0.998025172152 E-5 1.0 Q8JZM7 Parafibromin gi|156368841|ref|XP_001627900.1|predicted protein [Nematostella vectensis], 3e-212
other nr_hits gi|617409432|ref|XP_007554941.1|PREDICTED: parafibromin [Poecilia formosa] 1e-126; gi|657522757|ref|XP_008285711.1|PREDICTED: parafibromin [Stegastes partitus] 1e-126; gi|961856227|ref|XP_014844315.1|PREDICTED: parafibromin [Poecilia mexicana] 2e-126; gi|658897259|ref|XP_008431476.1|PREDICTED: parafibromin [Poecilia reticulata] 4e-126; gi|551501803|ref|XP_005802447.1|PREDICTED: parafibromin [Xiphophorus maculatus] 7e-126; gi|1079727557|ref|XP_018532780.1|PREDICTED: parafibromin [Lates calcarifer] 9e-126; gi|929071305|ref|XP_014045058.1|PREDICTED: parafibromin [Salmo salar] 9e-126; gi|821480030|ref|XP_012403201.1|PREDICTED: parafibromin [Sarcophilus harrisii] 1e-125; gi|126306381|ref|XP_001367517.1|PREDICTED: parafibromin [Monodelphis domestica] 1e-125;
NvERTx.4.166178 R-1 0.998025172152 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.230694 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.15026 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.15385 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.21467 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.24431 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.24454 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.24455 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.29466 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.29467 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.38412 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.39984 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.48439 R-7 0.993227387543 E-5 1.0 NA NA None
other nr_hits NA
NvERTx.4.68031 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92452 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92453 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96771 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103768 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103769 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113171 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113172 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113104 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.114871 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116234 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.120951 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.120954 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144996 R-7 0.993227387543 E-5 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
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