#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.124708 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124709 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124711 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181558 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181559 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181560 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181561 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181562 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181563 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181564 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181565 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181566 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181567 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181568 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181569 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181570 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181573 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181574 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197579 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197587 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197589 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description gi|156390757|ref|XP_001635436.1|predicted protein [Nematostella vectensis], 6e-84
other nr_hits gi|156368435|ref|XP_001627699.1|predicted protein [Nematostella vectensis] 3e-20; gi|156361213|ref|XP_001625413.1|predicted protein [Nematostella vectensis] 2e-17; gi|156405577|ref|XP_001640808.1|predicted protein [Nematostella vectensis] 5e-07;
NvERTx.4.197590 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197591 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197592 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description gi|156390757|ref|XP_001635436.1|predicted protein [Nematostella vectensis], 4e-83
other nr_hits gi|156368435|ref|XP_001627699.1|predicted protein [Nematostella vectensis] 3e-20; gi|156361213|ref|XP_001625413.1|predicted protein [Nematostella vectensis] 2e-17; gi|156405577|ref|XP_001640808.1|predicted protein [Nematostella vectensis] 5e-07;
NvERTx.4.197593 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description gi|156390757|ref|XP_001635436.1|predicted protein [Nematostella vectensis], 4e-83
other nr_hits gi|156361213|ref|XP_001625413.1|predicted protein [Nematostella vectensis] 2e-26; gi|156368435|ref|XP_001627699.1|predicted protein [Nematostella vectensis] 2e-20;
NvERTx.4.197595 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description gi|156390757|ref|XP_001635436.1|predicted protein [Nematostella vectensis], 4e-56
other nr_hits gi|156368435|ref|XP_001627699.1|predicted protein [Nematostella vectensis] 9e-21; gi|156361213|ref|XP_001625413.1|predicted protein [Nematostella vectensis] 4e-07;
NvERTx.4.197596 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description gi|156390757|ref|XP_001635436.1|predicted protein [Nematostella vectensis], 1e-28
other nr_hits gi|156361213|ref|XP_001625413.1|predicted protein [Nematostella vectensis] 3e-16;
NvERTx.4.201005 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201003 R-8 0.755311442544 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.5704 R-7 0.99996411466 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122953 R-7 0.99996411466 E-4 1.0 Q9PVV4 Pericentriolar material 1 protein gi|156393698|ref|XP_001636464.1|predicted protein [Nematostella vectensis], 2e-45
other nr_hits gi|999983759|gb|KXJ22900.1|Pericentriolar material 1 protein [Exaiptasia pallida] 2e-40; gi|1005459923|ref|XP_015767040.1|PREDICTED: pericentriolar material 1 protein-like isoform X1 [Acropora digitifera] 2e-37; gi|1005459925|ref|XP_015767041.1|PREDICTED: pericentriolar material 1 protein-like isoform X2 [Acropora digitifera] 2e-37; gi|390351634|ref|XP_786223.3|PREDICTED: pericentriolar material 1 protein isoform X1 [Strongylocentrotus purpuratus] 2e-29; gi|390351636|ref|XP_003727697.1|PREDICTED: pericentriolar material 1 protein isoform X2 [Strongylocentrotus purpuratus] 2e-29; gi|919027383|ref|XP_013397502.1|PREDICTED: pericentriolar material 1 protein-like isoform X1 [Lingula anatina] 5e-29; gi|919027385|ref|XP_013397503.1|PREDICTED: pericentriolar material 1 protein-like isoform X2 [Lingula anatina] 5e-29; gi|919027387|ref|XP_013397504.1|PREDICTED: pericentriolar material 1 protein-like isoform X3 [Lingula anatina] 5e-29; gi|919027389|ref|XP_013397505.1|PREDICTED: pericentriolar material 1 protein-like isoform X4 [Lingula anatina] 5e-29;
NvERTx.4.122954 R-7 0.99996411466 E-4 1.0 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122956 R-7 0.99996411466 E-4 1.0 Q15154 Pericentriolar material 1 protein gi|999983759|gb|KXJ22900.1|Pericentriolar material 1 protein [Exaiptasia pallida], 2e-237
other nr_hits gi|1005459923|ref|XP_015767040.1|PREDICTED: pericentriolar material 1 protein-like isoform X1 [Acropora digitifera] 1e-139; gi|1005459925|ref|XP_015767041.1|PREDICTED: pericentriolar material 1 protein-like isoform X2 [Acropora digitifera] 3e-136; gi|919027391|ref|XP_013397506.1|PREDICTED: pericentriolar material 1 protein-like isoform X5 [Lingula anatina] 1e-92; gi|919042223|ref|XP_013404353.1|PREDICTED: pericentriolar material 1 protein-like [Lingula anatina] 1e-92; gi|919027383|ref|XP_013397502.1|PREDICTED: pericentriolar material 1 protein-like isoform X1 [Lingula anatina] 1e-92; gi|919027385|ref|XP_013397503.1|PREDICTED: pericentriolar material 1 protein-like isoform X2 [Lingula anatina] 1e-92; gi|919027387|ref|XP_013397504.1|PREDICTED: pericentriolar material 1 protein-like isoform X3 [Lingula anatina] 1e-92; gi|919027389|ref|XP_013397505.1|PREDICTED: pericentriolar material 1 protein-like isoform X4 [Lingula anatina] 1e-92; gi|919027393|ref|XP_013397507.1|PREDICTED: pericentriolar material 1 protein-like isoform X6 [Lingula anatina] 1e-92;
NvERTx.4.122957 R-7 0.99996411466 E-4 1.0 Q15154 Pericentriolar material 1 protein gi|999983759|gb|KXJ22900.1|Pericentriolar material 1 protein [Exaiptasia pallida], 3e-262
other nr_hits gi|1005459923|ref|XP_015767040.1|PREDICTED: pericentriolar material 1 protein-like isoform X1 [Acropora digitifera] 1e-139; gi|1005459925|ref|XP_015767041.1|PREDICTED: pericentriolar material 1 protein-like isoform X2 [Acropora digitifera] 3e-136; gi|919042223|ref|XP_013404353.1|PREDICTED: pericentriolar material 1 protein-like [Lingula anatina] 2e-102; gi|919027383|ref|XP_013397502.1|PREDICTED: pericentriolar material 1 protein-like isoform X1 [Lingula anatina] 3e-102; gi|919027385|ref|XP_013397503.1|PREDICTED: pericentriolar material 1 protein-like isoform X2 [Lingula anatina] 3e-102; gi|919027387|ref|XP_013397504.1|PREDICTED: pericentriolar material 1 protein-like isoform X3 [Lingula anatina] 3e-102; gi|919027389|ref|XP_013397505.1|PREDICTED: pericentriolar material 1 protein-like isoform X4 [Lingula anatina] 3e-102; gi|919027393|ref|XP_013397507.1|PREDICTED: pericentriolar material 1 protein-like isoform X6 [Lingula anatina] 3e-102; gi|919027395|ref|XP_013397508.1|PREDICTED: pericentriolar material 1 protein-like isoform X7 [Lingula anatina] 3e-102;
NvERTx.4.80345 R-6 0.756594907204 E-4 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80346 R-6 0.756594907204 E-4 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80347 R-6 0.756594907204 E-4 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.109342 R-6 0.756594907204 E-4 0.999999999999 A0A177VP41_9BASI Uncharacterized protein {ECO:0000313|EMBL:OAJ29719.1} gi|999984155|gb|KXJ23296.1|hypothetical protein AC249_AIPGENE6191 [Exaiptasia pallida], 3e-23
other nr_hits gi|999976277|gb|KXJ15451.1|hypothetical protein AC249_AIPGENE26356 [Exaiptasia pallida] 8e-23; gi|1005454957|ref|XP_015764620.1|PREDICTED: uncharacterized protein LOC107343551 isoform X1 [Acropora digitifera] 1e-22; gi|1005454961|ref|XP_015764622.1|PREDICTED: uncharacterized protein LOC107343551 isoform X3 [Acropora digitifera] 1e-22; gi|1005454963|ref|XP_015764623.1|PREDICTED: uncharacterized protein LOC107343551 isoform X4 [Acropora digitifera] 1e-22; gi|1005454959|ref|XP_015764621.1|PREDICTED: uncharacterized protein LOC107343551 isoform X2 [Acropora digitifera] 8e-21; gi|999965926|gb|KXJ05104.1|hypothetical protein AC249_AIPGENE3261, partial [Exaiptasia pallida] 2e-20; gi|999984733|gb|KXJ23874.1|hypothetical protein AC249_AIPGENE15385 [Exaiptasia pallida] 9e-19; gi|999966946|gb|KXJ06120.1|hypothetical protein AC249_AIPGENE18138 [Exaiptasia pallida] 8e-18; gi|156385373|ref|XP_001633605.1|predicted protein [Nematostella vectensis] 2e-14;
NvERTx.4.109351 R-6 0.756594907204 E-4 0.999999999999 No_Uniprotmatch No_Description gi|999975707|gb|KXJ14881.1|hypothetical protein AC249_AIPGENE26954 [Exaiptasia pallida], 9e-10
other nr_hits gi|999976277|gb|KXJ15451.1|hypothetical protein AC249_AIPGENE26356 [Exaiptasia pallida] 9e-10; gi|999967703|gb|KXJ06877.1|hypothetical protein AC249_AIPGENE12629 [Exaiptasia pallida] 7e-08;
NvERTx.4.109353 R-6 0.756594907204 E-4 0.999999999999 A0A177VP41_9BASI Uncharacterized protein {ECO:0000313|EMBL:OAJ29719.1} gi|999976277|gb|KXJ15451.1|hypothetical protein AC249_AIPGENE26356 [Exaiptasia pallida], 2e-17
other nr_hits gi|999984155|gb|KXJ23296.1|hypothetical protein AC249_AIPGENE6191 [Exaiptasia pallida] 3e-17; gi|1005454957|ref|XP_015764620.1|PREDICTED: uncharacterized protein LOC107343551 isoform X1 [Acropora digitifera] 1e-16; gi|1005454961|ref|XP_015764622.1|PREDICTED: uncharacterized protein LOC107343551 isoform X3 [Acropora digitifera] 1e-16; gi|1005454963|ref|XP_015764623.1|PREDICTED: uncharacterized protein LOC107343551 isoform X4 [Acropora digitifera] 1e-16; gi|1005454959|ref|XP_015764621.1|PREDICTED: uncharacterized protein LOC107343551 isoform X2 [Acropora digitifera] 6e-15; gi|999965926|gb|KXJ05104.1|hypothetical protein AC249_AIPGENE3261, partial [Exaiptasia pallida] 4e-14; gi|999984733|gb|KXJ23874.1|hypothetical protein AC249_AIPGENE15385 [Exaiptasia pallida] 2e-12; gi|999966946|gb|KXJ06120.1|hypothetical protein AC249_AIPGENE18138 [Exaiptasia pallida] 4e-12; gi|156385373|ref|XP_001633605.1|predicted protein [Nematostella vectensis] 4e-11;
NvERTx.4.109347 R-6 0.756594907204 E-4 0.999999999999 No_Uniprotmatch No_Description gi|1005454959|ref|XP_015764621.1|PREDICTED: uncharacterized protein LOC107343551 isoform X2 [Acropora digitifera], 5e-09
other nr_hits gi|1005454957|ref|XP_015764620.1|PREDICTED: uncharacterized protein LOC107343551 isoform X1 [Acropora digitifera] 1e-08; gi|1005454961|ref|XP_015764622.1|PREDICTED: uncharacterized protein LOC107343551 isoform X3 [Acropora digitifera] 1e-08; gi|1005454963|ref|XP_015764623.1|PREDICTED: uncharacterized protein LOC107343551 isoform X4 [Acropora digitifera] 1e-08; gi|999984155|gb|KXJ23296.1|hypothetical protein AC249_AIPGENE6191 [Exaiptasia pallida] 4e-07; gi|999976277|gb|KXJ15451.1|hypothetical protein AC249_AIPGENE26356 [Exaiptasia pallida] 3e-06; gi|999965926|gb|KXJ05104.1|hypothetical protein AC249_AIPGENE3261, partial [Exaiptasia pallida] 3e-06; gi|999984733|gb|KXJ23874.1|hypothetical protein AC249_AIPGENE15385 [Exaiptasia pallida] 2e-05; gi|999975707|gb|KXJ14881.1|hypothetical protein AC249_AIPGENE26954 [Exaiptasia pallida] 2e-05; gi|999966946|gb|KXJ06120.1|hypothetical protein AC249_AIPGENE18138 [Exaiptasia pallida] 4e-05;
NvERTx.4.109349 R-6 0.756594907204 E-4 0.999999999999 No_Uniprotmatch No_Description gi|999975707|gb|KXJ14881.1|hypothetical protein AC249_AIPGENE26954 [Exaiptasia pallida], 9e-10
other nr_hits gi|999976277|gb|KXJ15451.1|hypothetical protein AC249_AIPGENE26356 [Exaiptasia pallida] 9e-10; gi|999967703|gb|KXJ06877.1|hypothetical protein AC249_AIPGENE12629 [Exaiptasia pallida] 7e-08;
NvERTx.4.202463 R-6 0.756594907204 E-4 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202456 R-6 0.756594907204 E-4 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136269 R-1 0.99249427085 E-4 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142866 R-1 0.99249427085 E-4 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142867 R-1 0.99249427085 E-4 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142868 R-1 0.99249427085 E-4 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170161 R-1 0.99249427085 E-4 0.999999999999 Q94899 COP9 signalosome complex subunit 2 gi|156402678|ref|XP_001639717.1|predicted protein [Nematostella vectensis], 1e-06
other nr_hits NA
NvERTx.4.170170 R-1 0.99249427085 E-4 0.999999999999 P61203 COP9 signalosome complex subunit 2 gi|156402678|ref|XP_001639717.1|predicted protein [Nematostella vectensis], 2e-133
other nr_hits gi|999989749|gb|KXJ28781.1|COP9 signalosome complex subunit 2 [Exaiptasia pallida] 1e-127; gi|1005426940|ref|XP_015751266.1|PREDICTED: COP9 signalosome complex subunit 2 [Acropora digitifera] 2e-127; gi|919016695|ref|XP_013392722.1|PREDICTED: COP9 signalosome complex subunit 2-like [Lingula anatina] 5e-122; gi|919016745|ref|XP_013392750.1|PREDICTED: COP9 signalosome complex subunit 2 [Lingula anatina] 5e-122; gi|1126168080|ref|XP_019615934.1|PREDICTED: COP9 signalosome complex subunit 2 [Branchiostoma belcheri] 8e-122; gi|291225622|ref|XP_002732800.1|PREDICTED: COP9 signalosome complex subunit 2 [Saccoglossus kowalevskii] 1e-121; gi|1121828708|ref|XP_019389184.1|PREDICTED: COP9 signalosome complex subunit 2 isoform X3 [Crocodylus porosus] 2e-119; gi|1108870983|ref|XP_010389447.2|PREDICTED: COP9 signalosome complex subunit 2 [Corvus cornix cornix] 2e-119; gi|1072265759|ref|XP_018418405.1|PREDICTED: COP9 signalosome complex subunit 2 [Nanorana parkeri] 2e-119;
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