#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.25080 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.27172 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.52381 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.66233 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.74023 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80701 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84366 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85871 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.86128 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.86129 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.104632 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111278 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111279 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111282 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112444 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112445 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112446 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116695 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124195 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.138466 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139151 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144020 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144204 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144205 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146034 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154845 R-6 0.943805492758 E-4 0.999999999465 A0A146NLK2_FUNHE Pol polyprotein {ECO:0000313|EMBL:JAQ31920.1} gi|1110874403|ref|XP_019210769.1|PREDICTED: uncharacterized protein LOC106096756 [Oreochromis niloticus], 1e-18
other nr_hits gi|1110934972|ref|XP_019212332.1|PREDICTED: uncharacterized protein LOC109201204 [Oreochromis niloticus] 1e-16; gi|928055708|ref|XP_013877158.1|PREDICTED: uncharacterized protein LOC106526962 [Austrofundulus limnaeus] 8e-16; gi|1110935984|ref|XP_019212624.1|PREDICTED: uncharacterized protein LOC109201437 [Oreochromis niloticus] 1e-14; gi|1110910137|ref|XP_019202932.1|PREDICTED: uncharacterized protein LOC109195387 [Oreochromis niloticus] 1e-14; gi|1110878485|ref|XP_019205321.1|PREDICTED: uncharacterized protein LOC106097703 [Oreochromis niloticus] 1e-14; gi|1110955791|ref|XP_019217816.1|PREDICTED: uncharacterized protein LOC102082587 [Oreochromis niloticus] 3e-14; gi|1025126749|ref|XP_016350835.1|PREDICTED: uncharacterized protein LOC107695446 [Sinocyclocheilus anshuiensis] 9e-14; gi|780156949|ref|XP_011682508.1|PREDICTED: uncharacterized protein LOC105446855 [Strongylocentrotus purpuratus] 1e-13; gi|1005460624|ref|XP_015767396.1|PREDICTED: uncharacterized protein LOC107346137 [Acropora digitifera] 8e-13;
NvERTx.4.154846 R-6 0.943805492758 E-4 0.999999999465 A0A146NLK2_FUNHE Pol polyprotein {ECO:0000313|EMBL:JAQ31920.1} gi|1110874403|ref|XP_019210769.1|PREDICTED: uncharacterized protein LOC106096756 [Oreochromis niloticus], 8e-18
other nr_hits gi|1110934972|ref|XP_019212332.1|PREDICTED: uncharacterized protein LOC109201204 [Oreochromis niloticus] 1e-15; gi|928055708|ref|XP_013877158.1|PREDICTED: uncharacterized protein LOC106526962 [Austrofundulus limnaeus] 6e-15; gi|1110935984|ref|XP_019212624.1|PREDICTED: uncharacterized protein LOC109201437 [Oreochromis niloticus] 9e-14; gi|1110910137|ref|XP_019202932.1|PREDICTED: uncharacterized protein LOC109195387 [Oreochromis niloticus] 9e-14; gi|1110878485|ref|XP_019205321.1|PREDICTED: uncharacterized protein LOC106097703 [Oreochromis niloticus] 9e-14; gi|1110955791|ref|XP_019217816.1|PREDICTED: uncharacterized protein LOC102082587 [Oreochromis niloticus] 3e-13; gi|1025126749|ref|XP_016350835.1|PREDICTED: uncharacterized protein LOC107695446 [Sinocyclocheilus anshuiensis] 8e-13; gi|780156949|ref|XP_011682508.1|PREDICTED: uncharacterized protein LOC105446855 [Strongylocentrotus purpuratus] 1e-12; gi|1005460624|ref|XP_015767396.1|PREDICTED: uncharacterized protein LOC107346137 [Acropora digitifera] 7e-12;
NvERTx.4.154847 R-6 0.943805492758 E-4 0.999999999465 A0A146NLK2_FUNHE Pol polyprotein {ECO:0000313|EMBL:JAQ31920.1} gi|1110874403|ref|XP_019210769.1|PREDICTED: uncharacterized protein LOC106096756 [Oreochromis niloticus], 8e-18
other nr_hits gi|1110934972|ref|XP_019212332.1|PREDICTED: uncharacterized protein LOC109201204 [Oreochromis niloticus] 1e-15; gi|928055708|ref|XP_013877158.1|PREDICTED: uncharacterized protein LOC106526962 [Austrofundulus limnaeus] 6e-15; gi|1110935984|ref|XP_019212624.1|PREDICTED: uncharacterized protein LOC109201437 [Oreochromis niloticus] 9e-14; gi|1110910137|ref|XP_019202932.1|PREDICTED: uncharacterized protein LOC109195387 [Oreochromis niloticus] 9e-14; gi|1110878485|ref|XP_019205321.1|PREDICTED: uncharacterized protein LOC106097703 [Oreochromis niloticus] 9e-14; gi|1110955791|ref|XP_019217816.1|PREDICTED: uncharacterized protein LOC102082587 [Oreochromis niloticus] 3e-13; gi|1025126749|ref|XP_016350835.1|PREDICTED: uncharacterized protein LOC107695446 [Sinocyclocheilus anshuiensis] 8e-13; gi|780156949|ref|XP_011682508.1|PREDICTED: uncharacterized protein LOC105446855 [Strongylocentrotus purpuratus] 1e-12; gi|1005460624|ref|XP_015767396.1|PREDICTED: uncharacterized protein LOC107346137 [Acropora digitifera] 7e-12;
NvERTx.4.157180 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.157126 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.157594 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159377 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159386 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160701 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160707 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160703 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160705 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160708 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161815 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.495 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.164298 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.164310 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168292 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description gi|156364880|ref|XP_001626572.1|predicted protein [Nematostella vectensis], 1e-49
other nr_hits NA
NvERTx.4.169965 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169966 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169830 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169831 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169832 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169833 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169834 R-6 0.943805492758 E-4 0.999999999465 No_Uniprotmatch No_Description None
other nr_hits NA
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