#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.87354 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87884 R-7 0.99924608112 E-4 0.999999999691 P55075 Fibroblast growth factor 8 gi|126015611|gb|ABN70836.1|fibroblast growth factor 8A [Nematostella vectensis], 8e-93
other nr_hits gi|116235657|gb|ABJ88945.1|fibroblast growth factor 8a [Nematostella vectensis] 5e-77; gi|1005438936|ref|XP_015756877.1|PREDICTED: fibroblast growth factor 8-like [Acropora digitifera] 2e-32; gi|1005438951|ref|XP_015756884.1|PREDICTED: fibroblast growth factor 18-like isoform X1 [Acropora digitifera] 8e-27; gi|999983934|gb|KXJ23075.1|Fibroblast growth factor 8 [Exaiptasia pallida] 2e-26; gi|1005438953|ref|XP_015756885.1|PREDICTED: fibroblast growth factor 18-like isoform X2 [Acropora digitifera] 3e-25; gi|999983957|gb|KXJ23098.1|Fibroblast growth factor 17 [Exaiptasia pallida] 6e-24; gi|284005094|ref|NP_001164697.1|fibroblast growth factor 8/17/18 precursor [Saccoglossus kowalevskii] 2e-23; gi|1025284191|ref|XP_016378153.1|PREDICTED: fibroblast growth factor 8 isoform X1 [Sinocyclocheilus rhinocerous] 4e-23; gi|1025284194|ref|XP_016378154.1|PREDICTED: fibroblast growth factor 8 isoform X2 [Sinocyclocheilus rhinocerous] 4e-23;
NvERTx.4.87886 R-7 0.99924608112 E-4 0.999999999691 P55075 Fibroblast growth factor 8 gi|126015611|gb|ABN70836.1|fibroblast growth factor 8A [Nematostella vectensis], 8e-110
other nr_hits gi|116235657|gb|ABJ88945.1|fibroblast growth factor 8a [Nematostella vectensis] 5e-94; gi|1005438936|ref|XP_015756877.1|PREDICTED: fibroblast growth factor 8-like [Acropora digitifera] 2e-33; gi|1005438951|ref|XP_015756884.1|PREDICTED: fibroblast growth factor 18-like isoform X1 [Acropora digitifera] 2e-26; gi|999983934|gb|KXJ23075.1|Fibroblast growth factor 8 [Exaiptasia pallida] 2e-26; gi|1005438953|ref|XP_015756885.1|PREDICTED: fibroblast growth factor 18-like isoform X2 [Acropora digitifera] 4e-25; gi|999983957|gb|KXJ23098.1|Fibroblast growth factor 17 [Exaiptasia pallida] 2e-24; gi|284005094|ref|NP_001164697.1|fibroblast growth factor 8/17/18 precursor [Saccoglossus kowalevskii] 3e-23; gi|1025284191|ref|XP_016378153.1|PREDICTED: fibroblast growth factor 8 isoform X1 [Sinocyclocheilus rhinocerous] 5e-23; gi|1025284194|ref|XP_016378154.1|PREDICTED: fibroblast growth factor 8 isoform X2 [Sinocyclocheilus rhinocerous] 5e-23;
NvERTx.4.97438 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105091 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105092 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description gi|1005464387|ref|XP_015769209.1|PREDICTED: uncharacterized protein LOC107347763 [Acropora digitifera], 9e-18
other nr_hits gi|999972054|gb|KXJ11228.1|hypothetical protein AC249_AIPGENE19146 [Exaiptasia pallida] 9e-13;
NvERTx.4.105093 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.115392 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.115399 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.134632 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142662 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143333 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145098 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145101 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145114 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.167767 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.167768 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.175029 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179783 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179798 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179799 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179800 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179785 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179786 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179794 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179795 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179796 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.179797 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.187597 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188279 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197082 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197083 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.216721 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.218490 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.218566 R-7 0.99924608112 E-4 0.999999999691 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169574 R-2 0.797641948094 E-4 0.999999999685 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169575 R-2 0.797641948094 E-4 0.999999999685 No_Uniprotmatch No_Description gi|156389611|ref|XP_001635084.1|predicted protein [Nematostella vectensis], 1e-69
other nr_hits gi|156407892|ref|XP_001641591.1|predicted protein [Nematostella vectensis] 8e-59; gi|156344499|ref|XP_001621208.1|hypothetical protein NEMVEDRAFT_v1g222250 [Nematostella vectensis] 4e-31; gi|1005471426|ref|XP_015772582.1|PREDICTED: uncharacterized protein LOC107350848 [Acropora digitifera] 8e-25; gi|156367067|ref|XP_001627241.1|predicted protein [Nematostella vectensis] 7e-23; gi|156385563|ref|XP_001633699.1|predicted protein [Nematostella vectensis] 2e-18; gi|156333684|ref|XP_001619387.1|hypothetical protein NEMVEDRAFT_v1g224236 [Nematostella vectensis] 2e-18; gi|156346992|ref|XP_001621600.1|hypothetical protein NEMVEDRAFT_v1g221795 [Nematostella vectensis] 3e-18; gi|156603167|ref|XP_001618788.1|hypothetical protein NEMVEDRAFT_v1g224815 [Nematostella vectensis] 4e-17; gi|156332929|ref|XP_001619324.1|hypothetical protein NEMVEDRAFT_v1g224296 [Nematostella vectensis] 4e-17;
NvERTx.4.169577 R-2 0.797641948094 E-4 0.999999999685 W4Z7K5_STRPU ATP-dependent DNA helicase {ECO:0000256|RuleBase:RU363044} gi|156389611|ref|XP_001635084.1|predicted protein [Nematostella vectensis], 7e-76
other nr_hits gi|156407892|ref|XP_001641591.1|predicted protein [Nematostella vectensis] 5e-62; gi|156344499|ref|XP_001621208.1|hypothetical protein NEMVEDRAFT_v1g222250 [Nematostella vectensis] 1e-38; gi|156367067|ref|XP_001627241.1|predicted protein [Nematostella vectensis] 1e-30; gi|1005471426|ref|XP_015772582.1|PREDICTED: uncharacterized protein LOC107350848 [Acropora digitifera] 1e-23; gi|156385563|ref|XP_001633699.1|predicted protein [Nematostella vectensis] 6e-19; gi|156333684|ref|XP_001619387.1|hypothetical protein NEMVEDRAFT_v1g224236 [Nematostella vectensis] 6e-19; gi|156346992|ref|XP_001621600.1|hypothetical protein NEMVEDRAFT_v1g221795 [Nematostella vectensis] 8e-19; gi|156603167|ref|XP_001618788.1|hypothetical protein NEMVEDRAFT_v1g224815 [Nematostella vectensis] 9e-18; gi|156332929|ref|XP_001619324.1|hypothetical protein NEMVEDRAFT_v1g224296 [Nematostella vectensis] 9e-18;
NvERTx.4.205026 R-2 0.797641948094 E-4 0.999999999685 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.205022 R-2 0.797641948094 E-4 0.999999999685 No_Uniprotmatch No_Description gi|156350048|ref|XP_001622119.1|predicted protein [Nematostella vectensis], 1e-08
other nr_hits gi|156389611|ref|XP_001635084.1|predicted protein [Nematostella vectensis] 2e-07; gi|156344499|ref|XP_001621208.1|hypothetical protein NEMVEDRAFT_v1g222250 [Nematostella vectensis] 9e-07; gi|156367067|ref|XP_001627241.1|predicted protein [Nematostella vectensis] 6e-06;
NvERTx.4.149964 R-9 0.970769987614 E-4 0.999999999679 Q9VUI3 Echinoderm microtubule-associated protein-like CG42247 gi|156408592|ref|XP_001641940.1|predicted protein [Nematostella vectensis], 3e-198
other nr_hits gi|1005462251|ref|XP_015768179.1|PREDICTED: echinoderm microtubule-associated protein-like 2 [Acropora digitifera] 6e-140; gi|999982430|gb|KXJ21580.1|Echinoderm microtubule-associated protein-like 1 [Exaiptasia pallida] 5e-124; gi|939691689|ref|XP_014289845.1|PREDICTED: echinoderm microtubule-associated protein-like CG42247 isoform X1 [Halyomorpha halys] 6e-88; gi|871272027|ref|XP_005111451.2|PREDICTED: uncharacterized protein LOC101847390 [Aplysia californica] 2e-84; gi|632942614|ref|XP_007886505.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X1 [Callorhinchus milii] 5e-84; gi|632942616|ref|XP_007886506.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X2 [Callorhinchus milii] 5e-84; gi|632942618|ref|XP_007886507.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X3 [Callorhinchus milii] 5e-84; gi|632942620|ref|XP_007886508.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X4 [Callorhinchus milii] 5e-84; gi|632942622|ref|XP_007886509.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X5 [Callorhinchus milii] 5e-84;
NvERTx.4.149965 R-9 0.970769987614 E-4 0.999999999679 Q4V8C3 Echinoderm microtubule-associated protein-like 1 gi|156408592|ref|XP_001641940.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999982430|gb|KXJ21580.1|Echinoderm microtubule-associated protein-like 1 [Exaiptasia pallida] 4e-244; gi|1005462251|ref|XP_015768179.1|PREDICTED: echinoderm microtubule-associated protein-like 2 [Acropora digitifera] 4e-205; gi|585653417|ref|XP_006815111.1|PREDICTED: echinoderm microtubule-associated protein-like CG42247-like [Saccoglossus kowalevskii] 5e-141; gi|939691689|ref|XP_014289845.1|PREDICTED: echinoderm microtubule-associated protein-like CG42247 isoform X1 [Halyomorpha halys] 4e-134; gi|632942614|ref|XP_007886505.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X1 [Callorhinchus milii] 1e-131; gi|632942616|ref|XP_007886506.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X2 [Callorhinchus milii] 1e-131; gi|632942618|ref|XP_007886507.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X3 [Callorhinchus milii] 1e-131; gi|632942620|ref|XP_007886508.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X4 [Callorhinchus milii] 1e-131; gi|632942622|ref|XP_007886509.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X5 [Callorhinchus milii] 1e-131;
NvERTx.4.149966 R-9 0.970769987614 E-4 0.999999999679 Q32P44 Echinoderm microtubule-associated protein-like 3 gi|156408592|ref|XP_001641940.1|predicted protein [Nematostella vectensis], 1e-22
other nr_hits gi|999982430|gb|KXJ21580.1|Echinoderm microtubule-associated protein-like 1 [Exaiptasia pallida] 5e-13; gi|1005462251|ref|XP_015768179.1|PREDICTED: echinoderm microtubule-associated protein-like 2 [Acropora digitifera] 2e-10;
NvERTx.4.149967 R-9 0.970769987614 E-4 0.999999999679 Q4V8C3 Echinoderm microtubule-associated protein-like 1 gi|156408592|ref|XP_001641940.1|predicted protein [Nematostella vectensis], 3e-270
other nr_hits gi|999982430|gb|KXJ21580.1|Echinoderm microtubule-associated protein-like 1 [Exaiptasia pallida] 1e-180; gi|1005462251|ref|XP_015768179.1|PREDICTED: echinoderm microtubule-associated protein-like 2 [Acropora digitifera] 2e-160; gi|632942614|ref|XP_007886505.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X1 [Callorhinchus milii] 5e-112; gi|632942616|ref|XP_007886506.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X2 [Callorhinchus milii] 5e-112; gi|632942618|ref|XP_007886507.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X3 [Callorhinchus milii] 5e-112; gi|632942620|ref|XP_007886508.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X4 [Callorhinchus milii] 5e-112; gi|632942622|ref|XP_007886509.1|PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X5 [Callorhinchus milii] 5e-112; gi|585653417|ref|XP_006815111.1|PREDICTED: echinoderm microtubule-associated protein-like CG42247-like [Saccoglossus kowalevskii] 9e-112; gi|831300569|ref|XP_012682250.1|PREDICTED: echinoderm microtubule-associated protein-like 1 [Clupea harengus] 2e-110;
NvERTx.4.52497 R-7 0.607372207963 E-4 0.999999999673 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.52498 R-7 0.607372207963 E-4 0.999999999673 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202215 R-7 0.607372207963 E-4 0.999999999673 Q0VCN3 Intraflagellar transport protein 27 homolog gi|156372453|ref|XP_001629052.1|predicted protein [Nematostella vectensis], 1e-62
other nr_hits gi|999968591|gb|KXJ07765.1|Intraflagellar transport protein 27-like [Exaiptasia pallida] 9e-46; gi|1005435697|ref|XP_015755358.1|PREDICTED: intraflagellar transport protein 27 homolog [Acropora digitifera] 2e-42; gi|919095109|ref|XP_013384370.1|PREDICTED: intraflagellar transport protein 27 homolog [Lingula anatina] 7e-33; gi|443689865|gb|ELT92156.1|hypothetical protein CAPTEDRAFT_6071 [Capitella teleta] 6e-32; gi|443682564|gb|ELT87120.1|hypothetical protein CAPTEDRAFT_80634, partial [Capitella teleta] 1e-31; gi|908426311|ref|XP_013074189.1|PREDICTED: intraflagellar transport protein 27 homolog [Biomphalaria glabrata] 1e-31; gi|676490635|ref|XP_009065334.1|hypothetical protein LOTGIDRAFT_108201 [Lottia gigantea] 3e-31; gi|1139832389|ref|XP_011450841.2|PREDICTED: intraflagellar transport protein 27 homolog [Crassostrea gigas] 3e-30; gi|762158581|ref|XP_011417472.1|PREDICTED: intraflagellar transport protein 27 homolog isoform X1 [Crassostrea gigas] 3e-30;
NvERTx.4.202216 R-7 0.607372207963 E-4 0.999999999673 Q0VCN3 Intraflagellar transport protein 27 homolog gi|156372453|ref|XP_001629052.1|predicted protein [Nematostella vectensis], 1e-62
other nr_hits gi|999968591|gb|KXJ07765.1|Intraflagellar transport protein 27-like [Exaiptasia pallida] 9e-46; gi|1005435697|ref|XP_015755358.1|PREDICTED: intraflagellar transport protein 27 homolog [Acropora digitifera] 2e-42; gi|919095109|ref|XP_013384370.1|PREDICTED: intraflagellar transport protein 27 homolog [Lingula anatina] 7e-33; gi|443689865|gb|ELT92156.1|hypothetical protein CAPTEDRAFT_6071 [Capitella teleta] 6e-32; gi|443682564|gb|ELT87120.1|hypothetical protein CAPTEDRAFT_80634, partial [Capitella teleta] 1e-31; gi|908426311|ref|XP_013074189.1|PREDICTED: intraflagellar transport protein 27 homolog [Biomphalaria glabrata] 1e-31; gi|676490635|ref|XP_009065334.1|hypothetical protein LOTGIDRAFT_108201 [Lottia gigantea] 3e-31; gi|1139832389|ref|XP_011450841.2|PREDICTED: intraflagellar transport protein 27 homolog [Crassostrea gigas] 3e-30; gi|762158581|ref|XP_011417472.1|PREDICTED: intraflagellar transport protein 27 homolog isoform X1 [Crassostrea gigas] 3e-30;
NvERTx.4.56418 R-2 0.999897431112 E-4 0.999999999664 No_Uniprotmatch No_Description gi|999985763|gb|KXJ24904.1|hypothetical protein AC249_AIPGENE13867 [Exaiptasia pallida], 9e-25
other nr_hits gi|1005488176|ref|XP_015780678.1|PREDICTED: uncharacterized protein LOC107358583 [Acropora digitifera] 4e-24; gi|999975079|gb|KXJ14253.1|hypothetical protein AC249_AIPGENE13344 [Exaiptasia pallida] 6e-23; gi|156375390|ref|XP_001630064.1|predicted protein [Nematostella vectensis] 2e-17; gi|156354278|ref|XP_001623325.1|predicted protein [Nematostella vectensis] 1e-11; gi|156375847|ref|XP_001630290.1|predicted protein [Nematostella vectensis] 3e-05; gi|999965768|gb|KXJ04946.1|hypothetical protein AC249_AIPGENE28254, partial [Exaiptasia pallida] 5e-05;
NvERTx.4.56419 R-2 0.999897431112 E-4 0.999999999664 No_Uniprotmatch No_Description None
other nr_hits NA
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