#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.178439 R-4 0.985625992058 E-4 0.99999999993 No_Uniprotmatch No_Description gi|156371700|ref|XP_001628900.1|predicted protein [Nematostella vectensis], 6e-31
other nr_hits gi|156353175|ref|XP_001622950.1|predicted protein [Nematostella vectensis] 5e-29; gi|156360798|ref|XP_001625211.1|predicted protein [Nematostella vectensis] 2e-26; gi|156358697|ref|XP_001624652.1|predicted protein [Nematostella vectensis] 1e-25;
NvERTx.4.178441 R-4 0.985625992058 E-4 0.99999999993 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.178443 R-4 0.985625992058 E-4 0.99999999993 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.104080 R-6 0.995162145969 E-4 0.999999999929 No_Uniprotmatch No_Description gi|156403041|ref|XP_001639898.1|predicted protein [Nematostella vectensis], 3e-65
other nr_hits gi|999974350|gb|KXJ13524.1|Ornithine decarboxylase antizyme 1 [Exaiptasia pallida] 5e-36; gi|1005463827|ref|XP_015768933.1|PREDICTED: ornithine decarboxylase antizyme 1-like, partial [Acropora digitifera] 1e-28;
NvERTx.4.104081 R-6 0.995162145969 E-4 0.999999999929 P55814 Ornithine decarboxylase antizyme 1 gi|156403041|ref|XP_001639898.1|predicted protein [Nematostella vectensis], 8e-105
other nr_hits gi|999974350|gb|KXJ13524.1|Ornithine decarboxylase antizyme 1 [Exaiptasia pallida] 2e-64; gi|1005463827|ref|XP_015768933.1|PREDICTED: ornithine decarboxylase antizyme 1-like, partial [Acropora digitifera] 3e-56; gi|831323961|ref|XP_012694977.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1 [Clupea harengus] 1e-22; gi|608788368|ref|NP_001278326.1|ornithine decarboxylase antizyme 1 [Lipotes vexillifer] 1e-22; gi|594656729|ref|XP_007198614.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1 [Balaenoptera acutorostrata scammoni] 1e-22; gi|593724207|ref|XP_007131107.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1 [Physeter catodon] 1e-22; gi|577019461|ref|NP_001276731.1|ornithine decarboxylase antizyme 1 [Tursiops truncatus] 1e-22; gi|577019459|ref|NP_001276730.1|ornithine decarboxylase antizyme 1 [Orcinus orca] 1e-22; gi|1123976934|ref|XP_019599543.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1 [Rhinolophus sinicus] 2e-22;
NvERTx.4.104082 R-6 0.995162145969 E-4 0.999999999929 P55814 Ornithine decarboxylase antizyme 1 gi|156403041|ref|XP_001639898.1|predicted protein [Nematostella vectensis], 8e-105
other nr_hits gi|999974350|gb|KXJ13524.1|Ornithine decarboxylase antizyme 1 [Exaiptasia pallida] 2e-64; gi|1005463827|ref|XP_015768933.1|PREDICTED: ornithine decarboxylase antizyme 1-like, partial [Acropora digitifera] 3e-56; gi|831323961|ref|XP_012694977.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1 [Clupea harengus] 1e-22; gi|608788368|ref|NP_001278326.1|ornithine decarboxylase antizyme 1 [Lipotes vexillifer] 1e-22; gi|594656729|ref|XP_007198614.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1 [Balaenoptera acutorostrata scammoni] 1e-22; gi|593724207|ref|XP_007131107.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1 [Physeter catodon] 1e-22; gi|577019461|ref|NP_001276731.1|ornithine decarboxylase antizyme 1 [Tursiops truncatus] 1e-22; gi|577019459|ref|NP_001276730.1|ornithine decarboxylase antizyme 1 [Orcinus orca] 1e-22; gi|1123976934|ref|XP_019599543.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1 [Rhinolophus sinicus] 2e-22;
NvERTx.4.104084 R-6 0.995162145969 E-4 0.999999999929 Q56K12 Ornithine decarboxylase antizyme 1 gi|156403041|ref|XP_001639898.1|predicted protein [Nematostella vectensis], 1e-76
other nr_hits gi|999974350|gb|KXJ13524.1|Ornithine decarboxylase antizyme 1 [Exaiptasia pallida] 2e-46; gi|1005463827|ref|XP_015768933.1|PREDICTED: ornithine decarboxylase antizyme 1-like, partial [Acropora digitifera] 6e-38; gi|919097891|ref|XP_013385636.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1-like [Lingula anatina] 5e-09; gi|1009534211|ref|XP_015904092.1|PREDICTED: ornithine decarboxylase antizyme 1-like [Parasteatoda tepidariorum] 1e-08; gi|307198444|gb|EFN79386.1|Myosin-2 essential light chain [Harpegnathos saltator] 1e-08; gi|645038248|ref|XP_008217540.1|PREDICTED: ornithine decarboxylase antizyme 1 [Nasonia vitripennis] 2e-08; gi|1059868420|ref|XP_017788951.1|PREDICTED: calglandulin-like [Habropoda laboriosa] 3e-08; gi|831323961|ref|XP_012694977.1|PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1 [Clupea harengus] 3e-08; gi|817196555|ref|XP_012273870.1|PREDICTED: ornithine decarboxylase antizyme 1, partial [Orussus abietinus] 3e-08;
NvERTx.4.120820 R-6 0.995162145969 E-4 0.999999999929 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146382 R-6 0.995162145969 E-4 0.999999999929 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.215002 R-6 0.995162145969 E-4 0.999999999929 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111908 R-6 0.931058535537 E-4 0.999999999924 O60779 Thiamine transporter 1 gi|156366054|ref|XP_001626956.1|predicted protein [Nematostella vectensis], 1e-214
other nr_hits gi|999990783|gb|KXJ29803.1|Thiamine transporter 2 [Exaiptasia pallida] 9e-140; gi|1005425992|ref|XP_015749628.1|PREDICTED: thiamine transporter 2-like [Acropora digitifera] 1e-136; gi|1126201023|ref|XP_019633847.1|PREDICTED: thiamine transporter 1-like [Branchiostoma belcheri] 5e-101; gi|115655535|ref|XP_791719.2|PREDICTED: thiamine transporter 2 [Strongylocentrotus purpuratus] 2e-93; gi|443702095|gb|ELU00256.1|hypothetical protein CAPTEDRAFT_184223 [Capitella teleta] 2e-93; gi|196012630|ref|XP_002116177.1|hypothetical protein TRIADDRAFT_50830 [Trichoplax adhaerens] 9e-89; gi|260793072|ref|XP_002591537.1|hypothetical protein BRAFLDRAFT_92766 [Branchiostoma floridae] 1e-86; gi|826331918|ref|XP_012513262.1|PREDICTED: thiamine transporter 1 [Propithecus coquereli] 1e-84; gi|556968127|ref|XP_005993111.1|PREDICTED: thiamine transporter 2 [Latimeria chalumnae] 2e-84;
NvERTx.4.111909 R-6 0.931058535537 E-4 0.999999999924 O60779 Thiamine transporter 1 gi|156366054|ref|XP_001626956.1|predicted protein [Nematostella vectensis], 5e-259
other nr_hits gi|999990783|gb|KXJ29803.1|Thiamine transporter 2 [Exaiptasia pallida] 1e-177; gi|1005425992|ref|XP_015749628.1|PREDICTED: thiamine transporter 2-like [Acropora digitifera] 3e-172; gi|1126201023|ref|XP_019633847.1|PREDICTED: thiamine transporter 1-like [Branchiostoma belcheri] 1e-126; gi|115655535|ref|XP_791719.2|PREDICTED: thiamine transporter 2 [Strongylocentrotus purpuratus] 1e-115; gi|443702095|gb|ELU00256.1|hypothetical protein CAPTEDRAFT_184223 [Capitella teleta] 2e-114; gi|826331918|ref|XP_012513262.1|PREDICTED: thiamine transporter 1 [Propithecus coquereli] 3e-109; gi|731237492|ref|XP_010632284.1|PREDICTED: thiamine transporter 1 isoform X1 [Fukomys damarensis] 5e-108; gi|556968127|ref|XP_005993111.1|PREDICTED: thiamine transporter 2 [Latimeria chalumnae] 6e-108; gi|829861573|ref|XP_012639359.1|thiamine transporter 1 isoform X1 [Microcebus murinus] 8e-108;
NvERTx.4.111910 R-6 0.931058535537 E-4 0.999999999924 O60779 Thiamine transporter 1 gi|156366054|ref|XP_001626956.1|predicted protein [Nematostella vectensis], 5e-259
other nr_hits gi|999990783|gb|KXJ29803.1|Thiamine transporter 2 [Exaiptasia pallida] 1e-177; gi|1005425992|ref|XP_015749628.1|PREDICTED: thiamine transporter 2-like [Acropora digitifera] 3e-172; gi|1126201023|ref|XP_019633847.1|PREDICTED: thiamine transporter 1-like [Branchiostoma belcheri] 1e-126; gi|115655535|ref|XP_791719.2|PREDICTED: thiamine transporter 2 [Strongylocentrotus purpuratus] 1e-115; gi|443702095|gb|ELU00256.1|hypothetical protein CAPTEDRAFT_184223 [Capitella teleta] 2e-114; gi|826331918|ref|XP_012513262.1|PREDICTED: thiamine transporter 1 [Propithecus coquereli] 3e-109; gi|731237492|ref|XP_010632284.1|PREDICTED: thiamine transporter 1 isoform X1 [Fukomys damarensis] 5e-108; gi|556968127|ref|XP_005993111.1|PREDICTED: thiamine transporter 2 [Latimeria chalumnae] 6e-108; gi|829861573|ref|XP_012639359.1|thiamine transporter 1 isoform X1 [Microcebus murinus] 8e-108;
NvERTx.4.83072 R-1 0.494994166039 E-4 0.999999999924 O15072 A disintegrin and metalloproteinase with thrombospondin motifs 3 gi|156370337|ref|XP_001628427.1|predicted protein [Nematostella vectensis], 2e-69
other nr_hits gi|999975860|gb|KXJ15034.1|A disintegrin and metalloproteinase with thrombospondin motifs 3 [Exaiptasia pallida] 5e-26; gi|1005420790|ref|XP_015758826.1|PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 7-like [Acropora digitifera] 3e-24; gi|999987050|gb|KXJ26173.1|A disintegrin and metalloproteinase with thrombospondin motifs 7 [Exaiptasia pallida] 1e-23; gi|1005420787|ref|XP_015758816.1|PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18-like [Acropora digitifera] 1e-22; gi|1005465528|ref|XP_015769751.1|PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 1-like [Acropora digitifera] 9e-21; gi|156367191|ref|XP_001627302.1|predicted protein [Nematostella vectensis] 2e-19; gi|999987080|gb|KXJ26203.1|A disintegrin and metalloproteinase with thrombospondin motifs 6 [Exaiptasia pallida] 8e-19; gi|1005421029|ref|XP_015759859.1|PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 16-like isoform X1 [Acropora digitifera] 8e-17; gi|1005421034|ref|XP_015759874.1|PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 16-like isoform X2 [Acropora digitifera] 8e-17;
NvERTx.4.108523 R-1 0.494994166039 E-4 0.999999999924 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.108524 R-1 0.494994166039 E-4 0.999999999924 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.207047 R-1 0.494994166039 E-4 0.999999999924 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200345 R-8 0.98341518715 E-4 0.999999999923 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200346 R-8 0.98341518715 E-4 0.999999999923 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200348 R-8 0.98341518715 E-4 0.999999999923 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200350 R-8 0.98341518715 E-4 0.999999999923 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196429 R-7 0.999496823373 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196430 R-7 0.999496823373 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196431 R-7 0.999496823373 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196432 R-7 0.999496823373 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196433 R-7 0.999496823373 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.196437 R-7 0.999496823373 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.226887 R-7 0.999496823373 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111793 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156324993|ref|XP_001618532.1|hypothetical protein NEMVEDRAFT_v1g225034 [Nematostella vectensis], 5e-07
other nr_hits NA
NvERTx.4.111792 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111783 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111784 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111786 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201885 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156341236|ref|XP_001620698.1|hypothetical protein NEMVEDRAFT_v1g248766 [Nematostella vectensis], 5e-06
other nr_hits NA
NvERTx.4.201888 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156341236|ref|XP_001620698.1|hypothetical protein NEMVEDRAFT_v1g248766 [Nematostella vectensis], 5e-05
other nr_hits NA
NvERTx.4.201889 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201890 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202586 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156341236|ref|XP_001620698.1|hypothetical protein NEMVEDRAFT_v1g248766 [Nematostella vectensis], 2e-60
other nr_hits gi|156324993|ref|XP_001618532.1|hypothetical protein NEMVEDRAFT_v1g225034 [Nematostella vectensis] 6e-42; gi|1005460830|ref|XP_015767498.1|PREDICTED: uncharacterized protein LOC107346245 [Acropora digitifera] 3e-25; gi|1005487005|ref|XP_015780095.1|PREDICTED: uncharacterized protein LOC107357975 [Acropora digitifera] 3e-24; gi|156365082|ref|XP_001626671.1|predicted protein [Nematostella vectensis] 6e-22; gi|156341234|ref|XP_001620697.1|hypothetical protein NEMVEDRAFT_v1g222811 [Nematostella vectensis] 4e-12; gi|999975962|gb|KXJ15136.1|hypothetical protein AC249_AIPGENE11273 [Exaiptasia pallida] 6e-06;
NvERTx.4.202587 R-6 0.990020918706 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156341236|ref|XP_001620698.1|hypothetical protein NEMVEDRAFT_v1g248766 [Nematostella vectensis], 5e-23
other nr_hits gi|156324993|ref|XP_001618532.1|hypothetical protein NEMVEDRAFT_v1g225034 [Nematostella vectensis] 9e-17; gi|156341234|ref|XP_001620697.1|hypothetical protein NEMVEDRAFT_v1g222811 [Nematostella vectensis] 4e-15; gi|1005487005|ref|XP_015780095.1|PREDICTED: uncharacterized protein LOC107357975 [Acropora digitifera] 1e-09; gi|1005460830|ref|XP_015767498.1|PREDICTED: uncharacterized protein LOC107346245 [Acropora digitifera] 3e-09;
NvERTx.4.159501 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160519 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160520 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160521 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160522 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160523 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160524 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160525 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160527 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.160528 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156382063|ref|XP_001632374.1|predicted protein [Nematostella vectensis], 3e-47
other nr_hits gi|999987876|gb|KXJ26983.1|Melanopsin-B [Exaiptasia pallida] 7e-27; gi|1005441981|ref|XP_015758319.1|PREDICTED: uncharacterized protein LOC107337624 isoform X1 [Acropora digitifera] 1e-12; gi|1005441985|ref|XP_015758321.1|PREDICTED: uncharacterized protein LOC107337624 isoform X2 [Acropora digitifera] 1e-12; gi|1005441989|ref|XP_015758323.1|PREDICTED: uncharacterized protein LOC107337624 isoform X3 [Acropora digitifera] 1e-12; gi|1005441991|ref|XP_015758324.1|PREDICTED: uncharacterized protein LOC107337624 isoform X4 [Acropora digitifera] 1e-12;
NvERTx.4.160529 R-4 0.661135941392 E-4 0.99999999992 No_Uniprotmatch No_Description gi|156382063|ref|XP_001632374.1|predicted protein [Nematostella vectensis], 9e-70
other nr_hits gi|999987876|gb|KXJ26983.1|Melanopsin-B [Exaiptasia pallida] 4e-37; gi|1005441981|ref|XP_015758319.1|PREDICTED: uncharacterized protein LOC107337624 isoform X1 [Acropora digitifera] 2e-17; gi|1005441985|ref|XP_015758321.1|PREDICTED: uncharacterized protein LOC107337624 isoform X2 [Acropora digitifera] 2e-17; gi|1005441989|ref|XP_015758323.1|PREDICTED: uncharacterized protein LOC107337624 isoform X3 [Acropora digitifera] 2e-17; gi|1005441991|ref|XP_015758324.1|PREDICTED: uncharacterized protein LOC107337624 isoform X4 [Acropora digitifera] 2e-17;
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